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Alignment for radish unigene UN13314

               1      -     51
UN13314        --> GGTAAAAAATTCAAATGATATTAAAATTCACCTATAATTGTAAGAACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> GGTAAAAAATTCAAATGATATTAAAATTCACCTATAATTGTAAGAACATT
EW728819       --> ....................................gcaaaAAGAACATT
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               51     -    101
UN13314        --> TATTTTGAAATAAATCTAAAATTTTAAATACAGAGGGAGTATTATTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- .................AAAATTTTAAATATAGAGGGAGTATTATTTATA  Raphanus sativus var. niger
EV549921       <-- .......................TTAAATACAGAAGGAGTATTATTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW724222       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> TATTTTGAAGCAAAATTAAAATTTTAAATATAGAGGGAGTATTATTTATA  Raphanus sativus var. oleiformis
EW728819       --> TATTTTGAAATAAATCTAAAATTTTAAATACAGAAGGAGTATTATTTATA  Raphanus sativus cv Early Scarlet Globe
FY452939       --> gATTTTGAAA-AAATCTAAAATTTTAAATACAGAGGGAGTATTATTTATA  Raphanus sativus cv GSK3-1
FY452950       --> gATTTTGAAATAAATCTAAAATTTTAAATACAGAGGGAGTATTATTTATA  Raphanus sativus cv GSK3-1
FY446738       --> ......GAAATAAATCTAAAATTTTAAATACAGAGGGAGTATTATTTATA  Raphanus sativus cv GSK3-1
EV545299       --> .......................TTAAATACAGAAGGAGTATTATTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> .........................AAATATAGAGGGAGTATTATTTATA  Raphanus raphanistrum subsp. landra
FD553855       --> .........................AAATATAGAGGGAGTATTATTTATA  Raphanus raphanistrum subsp. landra
FD936164       --> .........................agATATAGAGGGAGTATTATTTATA  Raphanus sativus var. oleiformis
FD977928       --> ..........................gATACAGAAGGAGTATTATTTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> .............................ACAGAAGGAGTATTATTTAT-  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ..........................aaaACAGAGGGAGTATTATTTATA  Raphanus sativus cv GSK3-1
EX774294       --> ................................GAGGGAGTATTATTTATA  Raphanus raphanistrum subsp. landra
FD553739       --> .................................................A  Raphanus raphanistrum subsp. landra
FD968995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN13314        --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- TTATTAATTTTTGGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EV549921       <-- TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD559472       <-- .......TTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> TTATTAATTTTTGGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EW728819       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FY452939       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FY452950       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FY446738       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EV545299       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD553057       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD553855       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD936164       --> TTATTAATTTTTGGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD977928       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EV546055       --> -TATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FY428711       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
EX774294       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD553739       --> TTATTAATTTTTAGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC
FD968995       --> ............AGCGTTGTTATGTTTTACAAGTCCCAACACATAGAAAC

               151    -    201
UN13314        --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus var. niger
EV549921       <-- ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. landra
EW724222       <-- ................................................tA  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus var. oleiformis
EW728819       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus cv Early Scarlet Globe
FY452939       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus cv GSK3-1
FY452950       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus cv GSK3-1
FY446738       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus cv GSK3-1
EV545299       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. landra
FD553855       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. landra
FD936164       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus var. oleiformis
FD977928       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAAATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAGATCTCTGGAAGATTAA  Raphanus sativus cv GSK3-1
EX774294       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. landra
FD553739       --> ATCCAGCTCAAATACAACATTATCCGGTACGTAGATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. landra
FD968995       --> ATCCAGCTCAAATACAACATTAACCGGTACGTAAATCTCTGGAAGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN13314        --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EV549921       <-- CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD559472       <-- CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EW724222       <-- CCGAAGTTGAT-CCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EW728819       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FY452939       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FY452950       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FY446738       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EV545299       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD553057       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD553855       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD936164       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD977928       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EV546055       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FY428711       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
EX774294       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT
FD553739       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATAGT
FD968995       --> CCGAAGTTGATTCCTTGCGCTAGAGGTAACTCATTCCCATAGTTGATCGT

               251    -    301
UN13314        --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EV549921       <-- GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD559472       <-- GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EW724222       <-- GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EW728819       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FY452939       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FY452950       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FY446738       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EV545299       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD553057       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD553855       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD936164       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD977928       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EV546055       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FY428711       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
EX774294       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD553739       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC
FD968995       --> GCAAGTGGAACGACGCATATACTGCTTCCAAGAGTCACTACCAGCTTCAC

               301    -    351
UN13314        --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- GACCACCACCGGTCGCTTTCTCACCACCAAAAGCTCCTCgtg........  Raphanus sativus var. niger
EV549921       <-- GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. landra
EW724222       <-- GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus var. oleiformis
EW728819       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus cv Early Scarlet Globe
FY452939       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus cv GSK3-1
FY452950       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus cv GSK3-1
FY446738       --> GACCACCACCAGTCGCTTTCTCACC.........................  Raphanus sativus cv GSK3-1
EV545299       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTACAATCTCAGCT  Raphanus raphanistrum subsp. landra
FD553855       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTACAATCTCAGCT  Raphanus raphanistrum subsp. landra
FD936164       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus var. oleiformis
FD977928       --> GAACACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus sativus cv GSK3-1
EX774294       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. landra
FD553739       --> GACCACCACCGGTCGCTTTCTCACCCCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. landra
FD968995       --> GACCACCACCAGTCGCTTTCTCACCTCCAAAAGCTCCTCCAATCTCAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN13314        --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- CCATTCGTCGGTATGTTTACATTCACTATCCCACAGTCACTTCCCATTGG
FD559472       <-- CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
EW724222       <-- CCATTCGTTGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
EW728819       --> CCATTCGTTGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FY452939       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FY452950       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FY446738       --> ..................................................
EV545299       --> CCATTCGTCGGTATGTTTACATTCACTATCCCACAGTCACTTCCCATTGG
FD553057       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FD553855       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FD936164       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FD977928       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
EV546055       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FY428711       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
EX774294       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FD553739       --> CCATTCGTCGGTATGTTCACATTCACTATCCCACAGTCACTTCCCATTGG
FD968995       --> CCATTCGTTGGTATGTTCACATTCACAATCCCACAGTCACTTCCCATTGG

               401    -    451
UN13314        --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. landra
EW724222       <-- TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> TCCGATCCATTTGAAGATGTTCCCGGGGCAACGAGTGAATATAGAGCTGC  Raphanus sativus var. oleiformis
EW728819       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus cv Early Scarlet Globe
FY452939       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus cv GSK3-1
FY452950       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. landra
FD553855       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. landra
FD936164       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus var. oleiformis
FD977928       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> TCCGATCCATTTGAAGATGTTCTCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus sativus cv GSK3-1
EX774294       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. landra
FD553739       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACGAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. landra
FD968995       --> TCCGATCCATTTGAAGATGTTCCCGGGGCTACCAGTGAATATAGAGCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN13314        --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD559472       <-- TTAGACCTTGGGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
EW724222       <-- TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
EW728819       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FY452939       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FY452950       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FY446738       --> ..................................................
EV545299       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD553057       --> TTAAACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD553855       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD936164       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD977928       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
EV546055       --> TTAAACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FY428711       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
EX774294       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD553739       --> TTAGACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC
FD968995       --> TTAAACCTTGAGGAACTGAGTTGTTTATCGCAACAGCTTCTTCAAATGTC

               501    -    551
UN13314        --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD559472       <-- TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
EW724222       <-- TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAA
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- ..................................................
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACta.
EW728819       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAA
FY452939       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FY452950       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FY446738       --> ..................................................
EV545299       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD553057       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD553855       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD936164       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACTAC
FD977928       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
EV546055       --> TTAAACTTTAAAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAAAAAC
FY428711       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
EX774294       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD553739       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC
FD968995       --> TTAAACTTTAGAGCATATAGAACCGGAGCAAACAGCTCTTCTTTAACAAC

               551    -    601
UN13314        --> AGCAGCATCTGATGATATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- AGCAGCATCTGATGAGATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. landra
EW724222       <-- AGCAGCATCTGATGATATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> AGCAGCATCTGATGATATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus sativus cv Early Scarlet Globe
FY452939       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus sativus cv GSK3-1
FY452950       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> AGCAGCATCTGATGAGATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. landra
FD553855       --> AGCAGCATCTGATGAGATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. landra
FD936164       --> AGCAGCATCTGATGATATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus sativus var. oleiformis
FD977928       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> AGCAGCATCTGATGATATCTCTATTATCGTTGGCTCCACAAAGTTTCCTT  Raphanus sativus cv GSK3-1
EX774294       --> AGCAGCATCTGATGAGATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. landra
FD553739       --> AGCAGCATCTGATGAGATCTCTATTATCGTAGGCTCCACAAAGTTTCCTT  Raphanus raphanistrum subsp. landra
FD968995       --> AGCAGCATCTGATGATATCTCTATTATCGTAGGCTCAACAAAGTTTCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN13314        --> CACCTTCAACTGCTTTACCTCCCGTTAATACTTTCCCGCCCTGGGACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- CACCTTCAACTGCTTTACCTCCCGTTAATACc..................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- CACCTTCAACTGCTTTACCTCCGGTTAATAATTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. landra
EW724222       <-- CACCTTCAACTGCTTTACCTCCCGTTAGTACTTTACCGCCCTGGGATTTG  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- ..................................................  Raphanus sativus cv GSK3-1
EV550847       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> CACCTTCAACTGCTTTACCTCCCGTTAGTACTTTACCGCCCTGGGATTTG  Raphanus sativus cv Early Scarlet Globe
FY452939       --> CACCTTCAACTGCTTTACCTCCCGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus sativus cv GSK3-1
FY452950       --> CACCTTCAACTGCTTTACCTCCCGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> CACCTTCAACTGCTTTACCTCCCGTTAATACc..................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> CACCTTCAACTGCTTTACCTCCGGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. landra
FD553855       --> CACCTTCAACTGCTTTACCTCCGGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. landra
FD936164       --> CACCTTCAACTCCTTTACCTCCCGTTAGTACTTTACCGCCCTGGGACTTG  Raphanus sativus var. oleiformis
FD977928       --> CACCTTCAACTGCTTTACCTCCCGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> CACCTTCAACTGCTTTACCTCCCGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> CAC...............................................  Raphanus sativus cv GSK3-1
EX774294       --> CACCTTCGACTGCTTTACCTCCGGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. landra
FD553739       --> CACCTTCAACTGCTTTACCTCCGGTTAATACTTTCCCGCCCTGGGACTTG  Raphanus raphanistrum subsp. landra
FD968995       --> CACCTTCAACTGCTTTACCTCCCGTTAGTACTTTACCGCCCTGGGACTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN13314        --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. landra
EW724222       <-- ATGACTTCGATTCCCTTCTCGAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- .............................CTTTGATTCAGGAGTGTGTAG  Raphanus sativus cv GSK3-1
EV550847       <-- ...............................TTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- .............................................TGTAG  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> ATGACTTCGATTCCCTTCTCGAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus sativus cv Early Scarlet Globe
FY452939       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus sativus cv GSK3-1
FY452950       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. landra
FD553855       --> ATGAC.............................................  Raphanus raphanistrum subsp. landra
FD936164       --> ATGACTTCGATCCCCTTCTCGAAGTTTTTCTTTGAT..............  Raphanus sativus var. oleiformis
FD977928       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ..................................................  Raphanus sativus cv GSK3-1
EX774294       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. landra
FD553739       --> ATGACTTCGATCCCCTTCTCAAAGTTTTTCTTTGATTCAGGAGTGTGTAG  Raphanus raphanistrum subsp. landra
FD968995       --> ATGACTTCAATCCCCTTCTCGAAGTTTTTCTTTGATTCAGGAGTG.....  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN13314        --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- TGGTCCTAACAATGTCCCTTTCTCAAGAGGATCACC..............  Raphanus raphanistrum subsp. landra
EW724222       <-- TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv GSK3-1
EV550847       <-- TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv Early Scarlet Globe
FY452939       --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv GSK3-1
FY452950       --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> TGGTCCTAACAATGTCCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus raphanistrum subsp. landra
FD553855       --> ..................................................  Raphanus raphanistrum subsp. landra
FD936164       --> ..................................................  Raphanus sativus var. oleiformis
FD977928       --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> TGGTCCTAACAATGTTCCTTTCTCAAGAGGATCACCGA............  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ..................................................  Raphanus sativus cv GSK3-1
EX774294       --> TGGTCCTAACAATGTCCCTT-CTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus raphanistrum subsp. landra
FD553739       --> TGGTCCTAACAATGTCCCTTTCTCAAGAGGATCACCGATCTTGACTTGTT  Raphanus raphanistrum subsp. landra
FD968995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN13314        --> TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW724222       <-- TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- TGTATGAAATCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv GSK3-1
EV550847       <-- TGTATGAAATCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv Early Scarlet Globe
FY452939       --> TGTATGAAATCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv GSK3-1
FY452950       --> TGTATGAAATCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus raphanistrum subsp. landra
FD553855       --> ..................................................  Raphanus raphanistrum subsp. landra
FD936164       --> ..................................................  Raphanus sativus var. oleiformis
FD977928       --> TGTATGAAATCAGGAGTTGCTCAAGTACTTTGTCATATACACTCTCATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ..................................................  Raphanus sativus cv GSK3-1
EX774294       --> TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACACTCCCATGC  Raphanus raphanistrum subsp. landra
FD553739       --> TGTATGAAGTCAGGAGTTGCTCAAGTACTTTGTCATATACA.........  Raphanus raphanistrum subsp. landra
FD968995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN13314        --> AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................  Raphanus sativus var. niger
EV549921       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD559472       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW724222       <-- AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus sativus cv Early Scarlet Globe
FY430340       <-- AAAAGCAGCCGACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus sativus cv GSK3-1
EV550847       <-- AAAAGCAGCCGACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY939801       <-- AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus sativus cv Early Scarlet Globe
FY454081       <-- ..................................................  Raphanus sativus cv GSK3-1
FD572185       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982345       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935445       --> ..................................................  Raphanus sativus var. oleiformis
EW728819       --> AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAA....  Raphanus sativus cv Early Scarlet Globe
FY452939       --> AAAAGCAGCCGACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus sativus cv GSK3-1
FY452950       --> AAAAGCAGCCGACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus sativus cv GSK3-1
FY446738       --> ..................................................  Raphanus sativus cv GSK3-1
EV545299       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553057       --> AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus raphanistrum subsp. landra
FD553855       --> ..................................................  Raphanus raphanistrum subsp. landra
FD936164       --> ..................................................  Raphanus sativus var. oleiformis
FD977928       --> AAAAGCAGCCGACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546055       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428711       --> ..................................................  Raphanus sativus cv GSK3-1
EX774294       --> AAAAGCAGCCTACGGCAAGTTGTGCAGCGTTGACCAGCGGTTCCAACAGC  Raphanus raphanistrum subsp. landra
FD553739       --> ..................................................  Raphanus raphanistrum subsp. landra
FD968995       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN13314        --> AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
FY430340       <-- AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
EV550847       <-- AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
EY939801       <-- AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
FY454081       <-- ................CGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> AGCAAACAGAACGGAACGGGCAGCTAACTGAAT.................
FY452950       --> AGCAAACAGAACGGAACGGGCAGCTAACTGAAT.................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> AGCAAACAGAACGGAACGGGCAGCTAACTGAATGTCAGCATCGTCCATGA
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> AGCA..............................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> AGCAAACAGAACGGAACGGGCAGCTAACTGA-TGTCAGCATCGTCCATGA
FD553739       --> ..................................................
FD968995       --> ..................................................

               901    -    951
UN13314        --> CTATGATTGCATTGTTCCCACTCAGTTCAAGCAATGTTTTGCCAGATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- CTATGATTGCATTGTTCCCACTCAGTTCAAGCAATGTTTTGCCAGA--TA
FY430340       <-- CTATGATTGCATTGTTCCCACTCAGTTCAAGCAATGTTTTGCCAGATCTA
EV550847       <-- CTATGATTGCATTGTTCCCACTCAGTTCAAGCAATGTTTTGCCAGATCTA
EY939801       <-- CTATGATTGCATTGTTCCCACTCAGTTCAAGCAATGTTTTGCCAGATCTA
FY454081       <-- CTATGATTGCATTGT-CCCACTCAGTTCAAGCAATGTTTTGCCAGATCTA
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> CTATGATTGCATTGTTCCCACTCAGTTCAAGCAGAGTTTTGC-AGATCTt
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> CTATGGTTGCATTGTTCCCCCTCAGTccagcagagtt.............
FD553739       --> ..................................................
FD968995       --> ..................................................

               951    -   1001
UN13314        --> GCACTCACTGTTTGTTGTACCGTTAAGCCCACCTTGGAGCTGCCAGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- GCACTCACTGTTTGTTGTACCGTTAAGCCCACCTTGGAGCTGCCAGTAAA
FY430340       <-- GCACTCACTGTTTGTTGTACCGTTAAGCCCACCTTGGAGCTGCCAGTAAA
EV550847       <-- GCACTCACTGTTTGTT-TACCGTTAAGCCCACCTTGGAGCTGCCAGTAAA
EY939801       <-- GCACTCACTGTTTGTTGTACCGTTAAGCCC....................
FY454081       <-- GCACTCACTGTTTGTTGTACCGTTAAGCCCACCTTGGAGCTGCCAGTAAA
FD572185       <-- ..................................................
FD982345       <-- ..................................................
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1001   -   1051
UN13314        --> GGAAACTAGAGGAATGCGTGTGTCTTTGGCTATTGCTTCACCAATCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- GGAAACTAGAGGc.....................................
FY430340       <-- GGAAACTAGAGGAATGCGTGTGTCTTTGGCTATTGCTTCACCAATCTCAG
EV550847       <-- GGAAACTAGAGGAATGCGTGTGTCTTTGGCTATTGCTTCACCAATCTCAG
EY939801       <-- ..................................................
FY454081       <-- GGAAACTAGAGGAATGCGTGTGTCTTTGGCTATTGCTTCACCAATCTCAG
FD572185       <-- .....................................TCACCA-TCTCAG
FD982345       <-- ..................................................
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1051   -   1101
UN13314        --> CACCACCACACATGGCAGTGAAAATGGCACCGGGTAAATGATTCTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- CACCACCACACATGGCAGTGAAAATGGCACCGGGTAAATGATTCTTCTCT
EV550847       <-- CACCACCACACATGGCAGTGAAAATGGCACCGGGTAAATGATTCTTCTCT
EY939801       <-- ..................................................
FY454081       <-- CACCACCACACATGGCAGTGAAAATGGCACCGGGTAAATGATTCTTCTCT
FD572185       <-- CACCACCACACATGGCAGTGAAAATGGCACCGGGTAAATGATTCTTCTCT
FD982345       <-- ..................................TAAATGAT-CTTCTCT
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1101   -   1151
UN13314        --> AAGACTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAACGGTGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- AAGACTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAACGGTGTAGT
EV550847       <-- AAGGCTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAGCGGTGTAGT
EY939801       <-- ..................................................
FY454081       <-- AAGACTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAACGGTGTAGT
FD572185       <-- AAGACTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAACGGTGTAGT
FD982345       <-- AAGACTTCAGCCACTAGTTTGGTCATTGCGATGGTTATCAACGGTGTAGT
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1151   -   1201
UN13314        --> TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
EV550847       <-- TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
EY939801       <-- ..................................................
FY454081       <-- TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
FD572185       <-- TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
FD982345       <-- TGGAGCACCTTTCCAGACTACACAGTTTCCACAGACAAGTGCAATACAAG
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1201   -   1251
UN13314        --> CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
EV550847       <-- CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
EY939801       <-- ..................................................
FY454081       <-- CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
FD572185       <-- CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
FD982345       <-- CATTCCAACCAAGAACTGCACATGGGAAGTTAAACGCTGTGATAACACCG
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1251   -   1301
UN13314        --> ACAATGCCAAGAGGATTCCACATCTCCAACATCATATGGTTTGGGCGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ACAATGCCAAGAGGATTCCACATCTCCAACATCATATGGTTTGGGCGTTC
EV550847       <-- ACAATGCCAAGAGGATTCCACATCTCCAACATCATATGGTTTGGGCGTTC
EY939801       <-- ..................................................
FY454081       <-- ACAATGCCAAGAGGATTCCACATCTCCAACATCATATGGTTTGGGCGTTC
FD572185       <-- ACAATGCCAAGAGGATTCCACATCTCCAACATCATATGGTTTGGGCGTTC
FD982345       <-- ACAATGCCAAGAGGATACCACATCTCCAACATCATATGGTTTGGGCGTTC
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1301   -   1351
UN13314        --> AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
EV550847       <-- AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
EY939801       <-- ..................................................
FY454081       <-- AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
FD572185       <-- AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
FD982345       <-- AGAAGGAATGACTGAACCATTGAGTTGTCGGCTCAGACCAACAGCAAAGT
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1351   -   1401
UN13314        --> CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
EV550847       <-- CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
EY939801       <-- ..................................................
FY454081       <-- CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
FD572185       <-- CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
FD982345       <-- CACACATGTCAATTACTTCCTGAACTTCACCAATGCCTTCGGCAAGGATC
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1401   -   1451
UN13314        --> TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTTTGGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTT.......
EV550847       <-- TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTTTGGATCT
EY939801       <-- ..................................................
FY454081       <-- TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTTTGGATCT
FD572185       <-- TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTTTGGATCT
FD982345       <-- TTTCCCATTTCAAGAGAAAGAAGACGGCCAAGATAGTCAAGTTTGGATCT
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1451   -   1501
UN13314        --> TAGTGCATCTCCGATTTGTCTCACGATATCACCTCTCTTAGGAGCAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- TAGTGCATCTCCGATTTGTCTCACGATATCACCTCTCTTAGGAGCAGGAA
EY939801       <-- ..................................................
FY454081       <-- TAGTGCATCTCCGATTTGTCTCACGATATCACCTCTCTTAGGAGCAGGAA
FD572185       <-- TAGTGCATCTCCGATTTGTCTCACGATATCACCTCTCTTAGGAGCAGGAA
FD982345       <-- TAGTGCATCTCCGATTTGTCTCACGATATCACCTCTCTTAGGAGCAGGAA
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1501   -   1551
UN13314        --> CCTGCATCCATATCTTAGCTGCTTCCTCGCAAGCTTTGAGACCTATCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- CCTGCATCCATATCTc..................................
EY939801       <-- ..................................................
FY454081       <-- CCTGCATCCATATCTTAGCTGCTTCCTCGCAAGCTTTGAGACCTATCTCG
FD572185       <-- CCTGCATCCATATCTTAGCTGCTTCCTCGCAAGCTTTGAGACCTATCTCG
FD982345       <-- CCTGCATCCATATCTTAGCTGCTTCCTCGCAAGCTTTGAGACCTATCTCG
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1551   -   1601
UN13314        --> TAATCTTCCAGAGAAGCTTCCACAACTTGAGCAATTGGCTGATTGTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- TAATCTTCCAGAGAAGCTTCCACAACTTGAGCAATTGGCTGATTGTTAGC
FD572185       <-- TAATCTTCCAGAGAAGCTTCCACAACTTGAGCAATTGGCTGATTGTTAGC
FD982345       <-- TAATCTTCCAGAGAAGCTTCCACAACTTGAGCAATTGGCTGATTGTTAGC
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1601   -   1651
UN13314        --> AGGATTCAAAGTAGAGACAAGAGGCCCGTTGCCTAGCCATTTGCCACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- AGGATTCAAAGTAGAGACAAGAGGCCCGTTGCCTAGCCATTTGCCACCAA
FD572185       <-- AGGATTCAAAGTAGAGACAAGAGGCCCGTTGCCTAGCCATTTGCCACCAA
FD982345       <-- AGGATTCAAAGTAGAGACAAGAGGCCCGTTGCCTAGCCATTTGCCACCAA
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1651   -   1701
UN13314        --> CGTAGTTTCCAATGTTGTGAGAAGTCAAACCAATCTCACTCAGAAACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- CGTAGTTTCCAATGTTGTGAGAAGTCAAACCAATCTCACTCAGAAACTC-
FD572185       <-- CGTAGTTTCCAATGTTGTGAGAAGTCAAACCAATCTCACTCAGAAACTCG
FD982345       <-- CGTAGTTTCCAATGTTGTGAGAAGTCAAACCAATCTCACTCAGAAACTCG
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1701   -   1751
UN13314        --> TACTCTTTGCTCGTAGAACCCATCTTCCTCTCTTATTATCGATGGTATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................................................
EV549921       <-- ..................................................
FD559472       <-- ..................................................
EW724222       <-- ..................................................
FY430340       <-- ..................................................
EV550847       <-- ..................................................
EY939801       <-- ..................................................
FY454081       <-- TACTCTTgc.........................................
FD572185       <-- TACTCTTTGCTCGTAGAACCCATCTTCCTCTCTTACTATCGATGGTATCG
FD982345       <-- TACTCTTTGCTCGTAGAACCCATCTTCCTCTCTTATTATCGATGGTATCG
FD935445       --> ..................................................
EW728819       --> ..................................................
FY452939       --> ..................................................
FY452950       --> ..................................................
FY446738       --> ..................................................
EV545299       --> ..................................................
FD553057       --> ..................................................
FD553855       --> ..................................................
FD936164       --> ..................................................
FD977928       --> ..................................................
EV546055       --> ..................................................
FY428711       --> ..................................................
EX774294       --> ..................................................
FD553739       --> ..................................................
FD968995       --> ..................................................

               1751   -   1801
UN13314        --> AAGTATGGAGTTTTCCCC
                   ~~~~~~~~~~~~~~~~~~
HS106902       <-- ..................
EV549921       <-- ..................
FD559472       <-- ..................
EW724222       <-- ..................
FY430340       <-- ..................
EV550847       <-- ..................
EY939801       <-- ..................
FY454081       <-- ..................
FD572185       <-- AAGTATGGAGTTTTCC..
FD982345       <-- AAGTATGGAGTTTTCCCC
FD935445       --> ..................
EW728819       --> ..................
FY452939       --> ..................
FY452950       --> ..................
FY446738       --> ..................
EV545299       --> ..................
FD553057       --> ..................
FD553855       --> ..................
FD936164       --> ..................
FD977928       --> ..................
EV546055       --> ..................
FY428711       --> ..................
EX774294       --> ..................
FD553739       --> ..................
FD968995       --> ..................