Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13380

               1      -     51
UN13380        --> CGGTTTTACTATAATTTTATTTCAAATGTTTCGAATCAAACGAAAACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CGGTTTTACTATAATTTTATTTCAAATGTTTCGAATCAAACGAAAACTAT
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               51     -    101
UN13380        --> AAAATTAATTTCAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ...........CAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> AAAATTAATTTCAAGGTTCGTCGTATTAATAAAAAGGAGAATAATTGATA
EV572259       --> ......AATTTCAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
EY928074       --> ......AATTTCAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
FD572915       --> ......gATTTCAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
FD567808       --> ......acTTTCAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA
FD567155       --> ...........CAAGGTTCTTCGTATTAATAATAAGGAGAATATTTGATA

               101    -    151
UN13380        --> CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
EV572259       --> CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAGTAGAGAGTAAA
EY928074       --> CAAACATCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
FD572915       --> CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
FD567808       --> CAAGCACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA
FD567155       --> CAAACACCAAAATTGAACTAAACCGGAAAGTGTAGGTAG-AGAG-GTAAA

               151    -    201
UN13380        --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
EV572259       --> CCAAAACAATCTCTTTTCAGGAGAGATCAGCGATAACACGCTCACATTTA
EY928074       --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
FD572915       --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
FD567808       --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA
FD567155       --> CCAAAACAATCTCTTTTCAAGAGAGATCAGCGATAACACGCTCACATTTA

               201    -    251
UN13380        --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCAGG-GGCAGTGA
EV572259       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
EY928074       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
FD572915       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
FD567808       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA
FD567155       --> TCTTCCAATATCTTCACAGCTTCAGTAAAGAGAACATCCGGAGGCAGTGA

               251    -    301
UN13380        --> TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAGAT
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> TCCTGTGGACTCGATTTTAAATATAAAATGATCCTTGACACTGCGCAAAT
EV572259       --> TCCTGTGGACTCAACTTTAAATATAAAATGGTCCTTGACACTGCGCAGAT
EY928074       --> TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAGAT
FD572915       --> TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAGAT
FD567808       --> TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAAAT
FD567155       --> TCCTGTGGACTCGATTTTAAATATAAAATGGTCCTTGACACTGCGCAAAT

               301    -    351
UN13380        --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
EV572259       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
EY928074       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
FD572915       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
FD567808       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG
FD567155       --> CCACCAGGTCAACCAAGTCATGGTCTCTTATGCACTCCTTACACAAGGTG

               351    -    401
UN13380        --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
EV572259       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
EY928074       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
FD572915       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
FD567808       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC
FD567155       --> CAATTGCGAGGCTGTGCTACCGTTGCCCTTTTCCTACCATTGCCCATGTC

               401    -    451
UN13380        --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
EV572259       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
EY928074       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
FD572915       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
FD567808       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT
FD567155       --> TTCAATGTCAAAAACATTCATTGGGCAGGTTTTTACCAGTCGTTCAGCTT

               451    -    501
UN13380        --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
EV572259       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
EY928074       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
FD572915       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
FD567808       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC
FD567155       --> TCTCATCCTCAACTTCCCCTAGTAAAACCACCTCAGGAAGCATTCGATAC

               501    -    551
UN13380        --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
EV567287       <-- ..................................................
FD564287       <-- ..................................................
FD986909       <-- ..................................................
EY903480       --> CAAGCTGTCCCTACTGG.................................
EV572259       --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
EY928074       --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
FD572915       --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
FD567808       --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT
FD567155       --> CAAGCTGTCCCTACTGGAGACCATTTTGCATGTGTTTTACCAATGCCCTT

               551    -    601
UN13380        --> AATCGCATGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- AATCGAGTGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
EV567287       <-- ................................CAGGGCTGAGTTTTGATA
FD564287       <-- ...............................................ATA
FD986909       <-- ..................................................
EY903480       --> ..................................................
EV572259       --> AATCGCATGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
EY928074       --> AATCGCATGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
FD572915       --> AATCGCATGAGCTTCAGGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
FD567808       --> AATCGCATGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA
FD567155       --> AATCGAGTGAGCTTCAAGTTCAATTTCCTGACCAGGGCTGAGTTTTGATA

               601    -    651
UN13380        --> TCAAGATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TCAAGATATCCA---GGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
EV567287       <-- TCAAGATATCAAGGTGGCTCGGAGTGATAGGGCTATCAGCAAATTCAGGG
FD564287       <-- TCAAGATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
FD986909       <-- ............................AGGGTTATCAGCAAATTCAGGG
EY903480       --> ..................................................
EV572259       --> TCAAGATATCAAGGTGGCTCGGAGTGATAGGGCTATCAGCAAATTCAGGG
EY928074       --> TCAAGATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
FD572915       --> TCAAAATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
FD567808       --> TCAAGATATCCAGGTGGCTCGGAGTGATAGGGTTATCAGCAAATTCAGGG
FD567155       --> TCAAGATATCCAGG---CTCGGAGTGATAGGGTTATCAGCAAATTCAGGG

               651    -    701
UN13380        --> AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT
EV567287       <-- AGAGAATCTTGACTACAGCTGAATGAAGTGTAAGTTTTTGGCTTCGAGGT
FD564287       <-- AGAGA-TCTTGGCTACAGCTGAATGAAGTGTAAGTTTT-GGCTTTGAGGT
FD986909       <-- AGAGA-TCTTGACTACAGCTGAATGAAGTGTAAGTTTT-GGCTTCGAGGT
EY903480       --> ..................................................
EV572259       --> AGAGAATCTTGACTACAGCTGAATGAAGTGTAAGTTTTTGGCTTCGAGGT
EY928074       --> AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT
FD572915       --> AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT
FD567808       --> AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT
FD567155       --> AGAGAATCTTGGCTACAGCTGAATGAAGTGTAAGTTTTTGGCTTTGAGGT

               701    -    751
UN13380        --> TGAAGTTGAATCTCCTGATTCTTTGATAAACTCACTTCCATTTGGTAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- TGAAGTTGAATCTC....................................  Raphanus sativus var. oleiformis
EV567287       <-- TGAAGTTGAATCTCCGGTTTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus raphanistrum subsp. landra
FD564287       <-- TGAAGTTGAATCTC-TGATTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus sativus var. oleiformis
FD986909       <-- TGAAGTTGAATCTCCGGTTTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus raphanistrum subsp. landra
EY903480       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572259       --> TGAAGTTGAATCTCCGGTTTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus raphanistrum subsp. landra
EY928074       --> TGAAGTTGAATCTCCTGATTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus sativus var. oleiformis
FD572915       --> TGAAGTTGAATCTCCTGATTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus sativus cv Early Scarlet Globe
FD567808       --> TGAAGTTGAATCTCCTGATTCTTTGATAAACTCACTTCCATTTGGTAACC  Raphanus sativus var. oleiformis
FD567155       --> TGAAGTTGAATCTC....................................  Raphanus sativus var. oleiformis

               751    -    801
UN13380        --> ATTGCAGCTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................  Raphanus sativus var. oleiformis
EV567287       <-- ATTGCAACTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus raphanistrum subsp. landra
FD564287       <-- ATTGCAGCTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus sativus var. oleiformis
FD986909       <-- ATTGCAACTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus raphanistrum subsp. landra
EY903480       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572259       --> ATTGCAACTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus raphanistrum subsp. landra
EY928074       --> ATTGCAGCTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus sativus var. oleiformis
FD572915       --> ATTGCAGCTCGTTCG...................................  Raphanus sativus cv Early Scarlet Globe
FD567808       --> ATTGCAGCTCGTTCGTTAAAACATGAAGACGTGATTGACCTTTCGGACAT  Raphanus sativus var. oleiformis
FD567155       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN13380        --> TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGGTCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGGTCGGT
FD564287       <-- TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGGTCGGT
FD986909       <-- TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGGTCGGT
EY903480       --> ..................................................
EV572259       --> TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTG......
EY928074       --> TTCACATGGAGTTTGAAAACGATGGTGTTCTTCTCGTTTGGCTGG.....
FD572915       --> ..................................................
FD567808       --> TTCACATGGA........................................
FD567155       --> ..................................................

               851    -    901
UN13380        --> TTCGGTTAAATACTCAAAGAGCCTTGGATCTGCGGCAATGGGAATAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- TTCGGTTAAATACTCAAAGAGCCTTGGATCTGCGGCAATGGGAATAAGAC
FD564287       <-- TTCGGTTAAATACTCAAAGAGCCTTGGATCTGCGGCAATGGGAATAAGAC
FD986909       <-- TTCGGTTAAATACTCAAAGAGCCTTGGATCTGCGGCAATGGGAATAAGAC
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               901    -    951
UN13380        --> CAATCCTGTGAGCAAGAACTTCGTCAACAATAAGCGACGTGTTGTATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- CAATCCTGTGAGCAAGAACTTCGTCAACAATAAGCGACGTGTTGTATGCT
FD564287       <-- CAATCCTGTGAGCAAGAACTTCGTCAACAATAAGCGACGTGTTGTATGCT
FD986909       <-- CAATCCTGTGAGCAAGAACTTCGTCAACAATAA--GACGTGTTGTATGCT
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               951    -   1001
UN13380        --> ATAAGCACTTTTTCAATAGCCATTGAAGGAACCTCAGCTATAAGGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- ATAAGCACTTTTTCAATAGCCATTGAAGGAACCTCAGCTATAAGGATCCT
FD564287       <-- ATAAGCACTTTTTCAATAGCCATTGAAGGAACCTCAGCTATAAGGATCCT
FD986909       <-- ATAAGCACTTTTTCAATAGCCATTGAAGGAACCTCAGCTATAAGGATCCT
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1001   -   1051
UN13380        --> TCTGAAAGCATTGGCGAATGCAGCATCGATACCGATCATATCAAACTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- TCTGAAAGCATTGGCGAATGCAGCATCGATACCGATCATATCAAACTCCA
FD564287       <-- TCTGAAAGCATTGGCGAATGCAGCATCGATACCGATCATATCAAACTCCA
FD986909       <-- TCTGAAAGCATTGGCGAATGCAGCATCGATACCGATCATATCAAACTCCA
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1051   -   1101
UN13380        --> TGTCTGTCTCCGTGCAACTAATCACATCAACTTTGAAATCCTCATAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- TGTCTGTCTCCGTGCAACTAATCACATCAACTTTGAAATCCTCATAGAAG
FD564287       <-- TGTCTGTCTCTGTGCAACTAATCACATCAACTTTGAAATCCTCATAGAAG
FD986909       <-- TGTCTGTCTCCGTGCAACTAATCACATCAACTTTGAAATCCTCATAGAAG
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1101   -   1151
UN13380        --> TTTCCTAGCTTCACAGTGTTGTCCACTCCCGAAGAGACATAGCTACCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- TTTCCTAGCTTCACAGTGTTGTCCACTCCCGAAGAGACATAGCTACCCGA
FD564287       <-- TTTCCTAACTTCATAGTGTTGTCCACTCCCGAAGAGACATAGCTACCCGA
FD986909       <-- TTTCCTAGCTTCACAGTGTTGTCCACTCCCGAAGAGACATAGCTACCCGA
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1151   -   1201
UN13380        --> GTAAATGACATCTGTAGTATCAACGGAAGCATCTTTTTTAGAGACGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- GTAAATGACATCTGTAGTATCAACGGAAGCATCTTTTTTAGAGACGACGG
FD564287       <-- GTAAATGACATCTACACTATCAACGGAAGCATCTTTTTTAGAGACGACGG
FD986909       <-- GTAAATGACATCTGTAGTATCAACGGAAGCATCTTTTTTAGAGACGACGG
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1201   -   1251
UN13380        --> CACGGTTTTGCTTGAGTTTCAGATGCGGAGGGAGTCCGGCAGGAACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- CACGGTTTTGCTTGAGTTTCAGATGCGGAGGGAGTCCGGCAGGAACGTCG
FD564287       <-- CACGGTTTTGCTTGAGTTTCAGATGCGGAGGAAGTCCGGCAGGGACGTCG
FD986909       <-- CACGGTTTTGCTTGAGTTTCAGATGCGGAGGGAGTCCGGCAGGAACGTCG
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1251   -   1301
UN13380        --> GGGAGGTCGTCGATGTAGAAGTTCTTGGCGAATATCTTGTCTTCTTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- GGGAGGTCGTCGATGCAGAAGTTCTTGGCGAATATCTTGTCTTCTTCAGT
FD564287       <-- GGGAGGTCGTCGATGTTGAAGTTCTTGGCGAATATCTTGTCTTCTTCAGT
FD986909       <-- GGGAGGTCGTCGATGTAGAAGTTCTTGGCGAATATCTTGCCTTCTTCAGT
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1301   -   1351
UN13380        --> CACCATCCTTTCTTTGGGAACAATTCAGTTTGTTCTAAAGGATGTCGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- CACCATCCTTTCTTTGGGAACAATTCAGTTTGTTCTAAAGGATGTCGCGA
FD564287       <-- CACCATGCTTCCTTTGGGAACAATTCAGTTTATTCTAAAGGATGTTGCGA
FD986909       <-- CACCATCCTTTCTTTGGGAACAATTCAGTTTGTTCTAAAGGATGTCGCGA
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1351   -   1401
UN13380        --> GTTTGAGAGAGAGAGAAGGTGGCGGCGAGGGAGGAACAAACGGCGGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD563541       <-- ..................................................
EV567287       <-- GCTTGAGAGAGAGAGAgagaggagaaggtggcggcgaggga.........
FD564287       <-- GTTTGAGAGAG-GAGAAGGTGGCGGCGAGGGAGGAACAAACGGCGGTGAA
FD986909       <-- GTTTGAGAGAGAGAGAgagaggagaaggtggcggcgaggga.........
EY903480       --> ..................................................
EV572259       --> ..................................................
EY928074       --> ..................................................
FD572915       --> ..................................................
FD567808       --> ..................................................
FD567155       --> ..................................................

               1401   -   1451
UN13380        --> GGGTCC
                   ~~~~~~
FD563541       <-- ......
EV567287       <-- ......
FD564287       <-- GGGTCC
FD986909       <-- ......
EY903480       --> ......
EV572259       --> ......
EY928074       --> ......
FD572915       --> ......
FD567808       --> ......
FD567155       --> ......