-1     -     49
UN13383        --> ..GGACATCTCACTAGTCGTCTCTAGCAAATCATGGCATCTCCTGTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- ..GGACATCTCACTAGTCGTCTCTAGCAAATCATGGCATCTCCTGTAGAG
EX893068       <-- ..................................................
FD936428       <-- ..................................................
EY914013       --> ..GGACATCTCACTAGTCGTCTCTAGCAAATCATGGCATCTCCTGTAGAG
EY914703       --> ggacACATCTCACTAGTCGTCTCTAGCAAATCATGGCATCTCCTGTAGAG
FD550732       --> ....ggATCTCACTAGTCGTCTCTAGCAAATCATGGCGTCTCCTGTAGAG
FD939603       --> ....ggATCTCACTAGTCGTCTCTAGCTAATCATGGCATCTCTTGTAGAG
FD940579       --> ....ggATCTCACTAGTCGTCTCTAGCTAATCATGGCATCTCTTGTAGAG

               49     -     99
UN13383        --> AAACAACTCCTCAAATCCCTCTTTTCATTCTTCTTTTTAATTCTACTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- AAACAACTCCTCAAATCCCTCTTTTCATTCTTCTTTTTAATTCTACTCTT
EX893068       <-- ..................................................
FD936428       <-- ..................................................
EY914013       --> AAACAACTCCTCAAATCCCTCTTTTCATTCTTCTTTTTAATTCTACTCTT
EY914703       --> AAACAACTCCTCAAATCCCTCTTTTCATTCTTCTTTTTAATTCTACTCTT
FD550732       --> AAACAACTCCTCAAATCCCTCTTTTCATTCTTCTTTTTAATTCTACTCTT
FD939603       --> AAACAACTCCTCAAATCCCTCTTCTCATTCTTTTTATTAGTTCTACTCTT
FD940579       --> AAACAACTCCTCAAATCCCTCTTCTCATTCTTTTTATTAGTTCTACTCTT

               99     -    149
UN13383        --> TTCCGATACCGCTTTCTCATCCCGAAAAACATTGGATCAGAGAAAGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- TTCCGATACCGCTTTCTCATCCCGAAAAACATTGGATCAGAGAAAGCCAT
EX893068       <-- ..................................................
FD936428       <-- ..................................................
EY914013       --> TTCCGATACCGCTTTCTCATCCCGAAAAACATTGGATCAGAGAAAGCCAT
EY914703       --> TTCCGATACCGCTTTCTCATCCCGAAAAACATTGGATCAGAGAAAGCCAT
FD550732       --> TTCCGATACCGCTTTCTCATCCCGAAAAACATTGGATCAGAGAAAGCCAT
FD939603       --> TTCCGATACCGTTTTCTCGTCCCGAAAAACATTGGATCAGAGAATGCCAT
FD940579       --> TTCCGATACCGTTTTCTCGTCCCGAAAAACATTGGATCAGAGAATGCCAT

               149    -    199
UN13383        --> GCAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- GTAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
EX893068       <-- ................................................AC
FD936428       <-- ..................................................
EY914013       --> GTAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
EY914703       --> GCAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
FD550732       --> GCAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
FD939603       --> GCAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC
FD940579       --> GCAAACATTTCTCTTTCTACTTCCATGACATCCTCTACGATGGCGACAAC

               199    -    249
UN13383        --> GTAGCAAACGCTACCTCGGCCGCAATCGTGAGCCCTCCGGGATTAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- GTAGCAAACGCTACCTCGGCCGCAATCGTGAGCCCTCCGGGATTAGGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893068       <-- GTAGCGAACGCTACCTCAGCCGCTATCGTGAGTCCTCCGGGATTAGGAAA  Raphanus sativus var. oleiformis
FD936428       <-- ..................................................  Raphanus sativus var. oleiformis
EY914013       --> GTAGCAAACGCTACCTCGGCCGCAATCGTGAGCCCTCCGGGATTAGGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914703       --> GTAGCAAACGCTACCTCGGCCGCAATCGTGAGCCCTCCGGGATTAGGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550732       --> GTAGCAAATGCTACCTCGGCCGCAATCGTGAGCCCTCCGGGATTAGGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939603       --> GTAGCGAACGCTACCTCAGCCGCTATCGTGAGTCCTCCGGGATTAGGAAA  Raphanus sativus var. oleiformis
FD940579       --> GTAGCGAACGCTACCTCAGCCGCTATCGTGAGTCCTCCGGGATTAGGAAA  Raphanus sativus var. oleiformis

               249    -    299
UN13383        --> CTTTAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- CTTTAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893068       <-- CTTCAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus sativus var. oleiformis
FD936428       <-- ..................................................  Raphanus sativus var. oleiformis
EY914013       --> CTTTAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914703       --> CTTTAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550732       --> CTTTAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939603       --> CTTCAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus sativus var. oleiformis
FD940579       --> CTTCAAGTTCGGTAAGTTTGTGATTTTTGATGGCCCCATAACAATGGACA  Raphanus sativus var. oleiformis

               299    -    349
UN13383        --> AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTTTAT
EX893068       <-- AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTTTAT
FD936428       <-- ............CAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
EY914013       --> AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
EY914703       --> AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
FD550732       --> AGAACTATCTCTCAGGACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
FD939603       --> AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT
FD940579       --> AGAACTATCTCTCAGAACCCGTGGCTCGTGCACAAGGCTTCTATTTCTAT

               349    -    399
UN13383        --> GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
EX893068       <-- GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
FD936428       <-- GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
EY914013       --> GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
EY914703       --> GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
FD550732       --> GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
FD939603       --> GACATGGAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA
FD940579       --> GACATGAAGACGGACTTCAACTCGTGGTTTTCCTACACCTTGGTGTTTAA

               399    -    449
UN13383        --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCGGACTTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCAGACTTGATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893068       <-- CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCGGACTTGATGA  Raphanus sativus var. oleiformis
FD936428       <-- CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCGGACTTGATGA  Raphanus sativus var. oleiformis
EY914013       --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCAGACTTGATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914703       --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCAGACTTGATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550732       --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCAGACTTGATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939603       --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCGGACTTGATGA  Raphanus sativus var. oleiformis
FD940579       --> CTCGACGGAACACAAAGGCACACTGAATATAATGGGTGCGGACTTGATGA  Raphanus sativus var. oleiformis

               449    -    499
UN13383        --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
EX893068       <-- TGGAGCCGACAAGAGATCTTTCGGTCGTTGGTGGGACTGGTGATTTCTTC
FD936428       <-- TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGACTTCTTC
EY914013       --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
EY914703       --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
FD550732       --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
FD939603       --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGATTTCTTC
FD940579       --> TGGAGCCGACAAGAGATCTATCGGTCGTTGGTGGGACTGGTGACTTCTTC

               499    -    549
UN13383        --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
EX893068       <-- ATGGCTCGTGGTATCGCTGCCTTTGTGACGGATCTGTTTCAAGGGGCTAA
FD936428       <-- ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
EY914013       --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
EY914703       --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
FD550732       --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA
FD939603       --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATTTGTTTCAAGGGGCTAA
FD940579       --> ATGGCTCGTGGTATCGCTACCTTTGTGACGGATCTGTTTCAAGGGGCTAA

               549    -    599
UN13383        --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
EX893068       <-- GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
FD936428       <-- GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
EY914013       --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
EY914703       --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAG
FD550732       --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
FD939603       --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA
FD940579       --> GTATTTCCGTGTTAAGATGGATATTAAACTATATGAATGTTACTAACTAA

               599    -    649
UN13383        --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
EX893068       <-- TTACATGTTTTATTTTGTAAATTGTGTGCTGACACAGAGATAAAATGTAT
FD936428       <-- TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
EY914013       --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
EY914703       --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
FD550732       --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAA-TGTAT
FD939603       --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT
FD940579       --> TTACATGTTTTATTTTGAAAATTGTGTGCTGACACAGAGATAAAATGTAT

               649    -    699
UN13383        --> TACTAGTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- TACTATTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893068       <-- TACTAGTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus sativus var. oleiformis
FD936428       <-- TACTAGTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus sativus var. oleiformis
EY914013       --> TACT..............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914703       --> TACTATTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550732       --> TACTATTGATAAGTAAGTGGTTTTCGTTTCTGTTT-ACAGTTTAT-GTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939603       --> TACTAGTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus sativus var. oleiformis
FD940579       --> TACTAGTGATAAGTAAGTGGTTTTCGTTTCTGTTTTACAGTTTATTGTAT  Raphanus sativus var. oleiformis

               699    -    749
UN13383        --> GTTTCTGCTTTTATATAATTCATGTTATCCCGATTGTAGAAGCCTTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910141       <-- GTTTCTGCTTTTATATAATTCATGTTATCCCGAaaaaaa...........
EX893068       <-- GTTT..............................................
FD936428       <-- GTTTCTGCTTTTATATAATTCATGTTATCCCGATTGTAGAAGCCTTAATG
EY914013       --> ..................................................
EY914703       --> GTTTCTGCTTTTATATAATTCATGTTATCCCGATTGTAG...........
FD550732       --> GTTTCTGCTTT-ATATAtcatgtatc........................
FD939603       --> GTTTCTGCTTTTATATAATTCATGTTATCCCGATTGTAGAAGCCTTAATG
FD940579       --> GTTTCTGCTTT-ATATAATTCATGTTATCCCGATTGTAGAAGCCTTAATG

               749    -    799
UN13383        --> AACAAAAGAATGTTCCC..
                   ~~~~~~~~~~~~~~~~~~~
EY910141       <-- ...................
EX893068       <-- ...................
FD936428       <-- AACAAAAGAATGTTCCCcg
EY914013       --> ...................
EY914703       --> ...................
FD550732       --> ...................
FD939603       --> AACAAA.............
FD940579       --> A-CAAA-GA-TGTTCCCg.