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Alignment for radish unigene UN13393

               -6     -     44
UN13393        --> .......ACTAAGAGTCTCTTACATAAACATCAAATCCCAACAACTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ..................................................
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> .....ggACTAAGAGTCTCTTACATAAACATCAAATCCCAACAACTGATC
FD564171       --> .....ggACTAGGAGTCTCTTACATAAACATCAAATCCCAACAACTGATC
FD564636       --> ggaagtcACTAAGAGTCTCTTACATAAACATCAAATCCCAACAACTGATC
FD564337       --> ......agggAAGAGTCTCTTACATAAACATCAAATCCCAACAACTGATC
EV527070       --> ...............TCTCTTACATAAACATCAAATCCCAACAACTGATC
EX748226       --> ...............TCTCTTACATAAACATCAAATCCCAACAACTGATC
EX748142       --> ..................................................
FD963758       --> ..................................................

               44     -     94
UN13393        --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ..................................................
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
FD564171       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
FD564636       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
FD564337       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
EV527070       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
EX748226       --> TACTATAAAACCCCACCTTGAGAAAAATAATCCAAAACAATGTACTCTTC
EX748142       --> .........................AATAATCCAAAACAATGTACTCTTC
FD963758       --> ..................................................

               94     -    144
UN13393        --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ..................................................
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
FD564171       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
FD564636       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
FD564337       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
EV527070       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
EX748226       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
EX748142       --> ATCGTCTGTATCAAAATGCGTCATTTTGATCCATGTCTTCGCCATGCAAC
FD963758       --> ..................................................

               144    -    194
UN13393        --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ............................AAACACGACCAATGCGTATCTC
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
FD564171       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
FD564636       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
FD564337       --> TTCTCCTTATAAACAGCGGATTGCCCTTAAACACGACCAATGCGTATCTC
EV527070       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
EX748226       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACGACCAATGCGTATCTC
EX748142       --> TTCTCCTTATAAACAGCGAATTGCCCTTAAACACAACCAATGCGTATCTC
FD963758       --> ..................................................

               194    -    244
UN13393        --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
FD564171       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
FD564636       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
FD564337       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
EV527070       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
EX748226       --> AACCACAAATGCGTGGTTAGTCAAGGAAAATACAAGCCTGGAAGTAAGTA
EX748142       --> A.................................................
FD963758       --> ..................................................

               244    -    294
UN13393        --> CGAGAAACAGTTAAAATTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- CGAGAAACAGTTAAAATTGACCATCAAAAGTTTTTATTCTAGCAGTGAAA
EV531401       <-- ..................................................
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> CGAGAAACAGTTAAAATTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
FD564171       --> CGAGAAACAGTTAAAATTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
FD564636       --> CGAGAAACAGTTAAAATTGACCATCAAAAGTTTTTATTCTAGCAGTGAAA
FD564337       --> CGAGAAACAGTTAAAATTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
EV527070       --> CGAGAAACAGTTAAAACTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
EX748226       --> CGAGAAACAGTTAAAATTGACCATCAAAAATTTTTATTCTAGCAGTGAAA
EX748142       --> ..................................................
FD963758       --> ..................................................

               294    -    344
UN13393        --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
EV531401       <-- .......................................CCGCTATCCTC
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
FD564171       --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
FD564636       --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
FD564337       --> ATAAAGAAGGTTTAGACCTTT-AGGCGGTGACGGTTTTTCCGCTATCCTC
EV527070       --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
EX748226       --> ATAAAGAAGGTTTAGACCTTTTAGGCGGTGACGGTTTTTCCGCTATCCTC
EX748142       --> ..................................................
FD963758       --> ..................................................

               344    -    394
UN13393        --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- CAGTGCCGCGGCGACTCCTACGGG-GCAAGTGCCGCGACTGCTATGCCAC
EV531401       <-- CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
FD567722       <-- ..................................................
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
FD564171       --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
FD564636       --> CAGTGCCGCGGCGACTCCTACGGG-GCAAGTGCCGCGACTGCTATGCCAC
FD564337       --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
EV527070       --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
EX748226       --> CAGTGCCGCGGCGACTCCTACGGGCGCAAGTGCCGCGACTGCTATGCCAC
EX748142       --> ..................................................
FD963758       --> ..................................................

               394    -    444
UN13393        --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
EV531401       <-- CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
FD567722       <-- ...............TCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
FD564171       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
FD564636       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
FD564337       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
EV527070       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
EX748226       --> CGCCGTCGCTGCGCTTCATAGGAAATGTCCGTGGTACAAGGCGAAAATAA
EX748142       --> ..................................................
FD963758       --> ..................................................

               444    -    494
UN13393        --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
EV531401       <-- TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
FD567722       <-- TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
FD567848       <-- ..................................................
FD959967       <-- ..................................................
FD533347       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
FD564171       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
FD564636       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
FD564337       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
EV527070       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
EX748226       --> TATGGTATGACCAATGTCTTCTCTCGTTTGATACAAAATATTCTACTGGG
EX748142       --> ..................................................
FD963758       --> ..................................................

               494    -    544
UN13393        --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
EV531401       <-- ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD567722       <-- ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD567848       <-- ....................TTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD959967       <-- ..................................................
FD533347       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD564171       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD564636       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
FD564337       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
EV527070       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
EX748226       --> ATGATCGACTACGACAATAATTTTTGTATGTCAAACGCTAAGAAGTTGGG
EX748142       --> ..................................................
FD963758       --> ....................TTTTTGTATGTCAAACGCTAAGAAGTTGGG

               544    -    594
UN13393        --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
EV531401       <-- AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATT
FD567722       <-- AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
FD567848       <-- AGGAGATAAACTTTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
FD959967       <-- ..................................................
FD533347       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
FD564171       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
FD564636       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
FD564337       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
EV527070       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
EX748226       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC
EX748142       --> ..................................................
FD963758       --> AGGAGATAAACTCTCGTTTATGAGGACTTGGAATACTTTCATGGACAATC

               594    -    644
UN13393        --> TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
EV531401       <-- TGATGGCTTTAGCCACGCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus raphanistrum subsp. maritimus
FD567722       <-- TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
FD567848       <-- TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
FD959967       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD533347       --> TGATGGCTTTAGCCACGCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus raphanistrum subsp. maritimus
FD564171       --> TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
FD564636       --> TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
FD564337       --> TGATGGCTTTAGCCACCCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus sativus var. oleiformis
EV527070       --> TGATGGCTTTAGCCACGCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus raphanistrum subsp. maritimus
EX748226       --> TGATGGCTTTAGCCACGCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus raphanistrum subsp. maritimus
EX748142       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD963758       --> TGATGGCTTTAGCCACGCGTGCTGATAATGACACAACATATCCACCATTG  Raphanus raphanistrum subsp. maritimus

               644    -    694
UN13393        --> TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- TACTCTGTGGGGAAGACGAGGTTCAACGTTGATACGATGTATGGAATGGT
EV531401       <-- TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
FD567722       <-- TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
FD567848       <-- TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
FD959967       <-- ..................................................
FD533347       --> TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
FD564171       --> TACTCTGTGGGGAAGACGAGGTTC..........................
FD564636       --> TACTCTGTGGGGAAGACGAGGTTCAACGTTGATACGATGTATGGAATGGT
FD564337       --> TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
EV527070       --> TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT
EX748226       --> TACTCTGTGGGGAAGA..................................
EX748142       --> ..................................................
FD963758       --> TACTCTGTGGGGAAGACGAGGTTCAACGGTGATACGATGTATGGAATGGT

               694    -    744
UN13393        --> GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGAGTGTCTGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGAGTGTCTGGTGT
EV531401       <-- GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGAGTGTCTGGTGT
FD567722       <-- GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGAGTGTCTGGTGT
FD567848       <-- GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGAGTGTCTGGTGT
FD959967       <-- ..................................................
FD533347       --> GCAATGTACAAAAGACAT................................
FD564171       --> ..................................................
FD564636       --> GCAGTGTACAAA-GACATACCCCCTAA-GCTTGT................
FD564337       --> GCAGTGTACAAA-GACATACCCCCTAAAGCTTGTAAG-AGTGTCTGGTGT
EV527070       --> GCAGTGTACAAAAGACA.................................
EX748226       --> ..................................................
EX748142       --> ..................................................
FD963758       --> GCAGTGTACAAAAGACATACCCCCTAAAGCTTGTAAGGGGTGTCTGGTGT

               744    -    794
UN13393        --> TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA
EV531401       <-- TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA
FD567722       <-- TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA
FD567848       <-- TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA
FD959967       <-- ..................................................
FD533347       --> ..................................................
FD564171       --> ..................................................
FD564636       --> ..................................................
FD564337       --> TTTATAGCATTCATTTTCA-GATTGCTTGA-TGATAAACGAG-AGCGAGA
EV527070       --> ..................................................
EX748226       --> ..................................................
EX748142       --> ..................................................
FD963758       --> TTTATAGCATTCATTTTCAAGATTGCTTGAATGATAAACGAGGAGCGAGA

               794    -    844
UN13393        --> TTTATGAGTAGAAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- TTTATGAGTAGAAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC
EV531401       <-- TTTATGAGTAGAAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC
FD567722       <-- TTTATGAGTAGCAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC
FD567848       <-- TTTATGAGTAGAAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC
FD959967       <-- .................................................C
FD533347       --> ..................................................
FD564171       --> ..................................................
FD564636       --> ..................................................
FD564337       --> TTTATGAGTAGAAGCTGTACTT............................
EV527070       --> ..................................................
EX748226       --> ..................................................
EX748142       --> ..................................................
FD963758       --> TTTATGAGTAGAAGCTGTACTTTTAGGTTTGAGTTTTACCCTTTTATTGC

               844    -    894
UN13393        --> CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTAA  Raphanus sativus var. oleiformis
EV531401       <-- CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTTT  Raphanus raphanistrum subsp. maritimus
FD567722       <-- CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTAA  Raphanus sativus var. oleiformis
FD567848       <-- CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTAA  Raphanus sativus var. oleiformis
FD959967       <-- CAAGCAGGTCGGGAATATTTTAAGAGTCAAATAAATATTTTTTTTTTTTT  Raphanus raphanistrum subsp. maritimus
FD533347       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD564171       --> ..................................................  Raphanus sativus var. oleiformis
FD564636       --> ..................................................  Raphanus sativus var. oleiformis
FD564337       --> ..................................................  Raphanus sativus var. oleiformis
EV527070       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748226       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748142       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD963758       --> CAAGCAGGTCAGGAATATTTTAAGAGTCAAATAAATATTTATTTTTTTTT  Raphanus raphanistrum subsp. maritimus

               894    -    944
UN13393        --> T-AAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTCTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- A-AAATATTTTCAGcc..................................  Raphanus sativus var. oleiformis
EV531401       <-- T-AAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTCTTTTT  Raphanus raphanistrum subsp. maritimus
FD567722       <-- A-AAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTCTTTTT  Raphanus sativus var. oleiformis
FD567848       <-- A-AAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTCTTTTT  Raphanus sativus var. oleiformis
FD959967       <-- TTAAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTTTTTTT  Raphanus raphanistrum subsp. maritimus
FD533347       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD564171       --> ..................................................  Raphanus sativus var. oleiformis
FD564636       --> ..................................................  Raphanus sativus var. oleiformis
FD564337       --> ..................................................  Raphanus sativus var. oleiformis
EV527070       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748226       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748142       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD963758       --> TTAAATATTTTCAGTCAGAAGTTTATGTAACATCAAGTGCAACTCTTTTT  Raphanus raphanistrum subsp. maritimus

               944    -    994
UN13393        --> TTTGATGAATGTTTGAAGAATAAAACAACAAAATAATGACTGAATAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ..................................................
EV531401       <-- TTTGATGAATGTTTGAAGAATAAAACAACAAAATAATGACTGAATAAGAG
FD567722       <-- TT-GATGAATGTTTG...................................
FD567848       <-- TT-GATGAATGTTTGAAGAATAAAACAACAAAATAATGACTGAATAAGgt
FD959967       <-- TTTGATGAATGTTTGAAGAATAAAACAACAAAAaaa..............
FD533347       --> ..................................................
FD564171       --> ..................................................
FD564636       --> ..................................................
FD564337       --> ..................................................
EV527070       --> ..................................................
EX748226       --> ..................................................
EX748142       --> ..................................................
FD963758       --> TTTGATGAATGTTTGAAGAATAAAACAACAAAATAATGACTGAATAAGAG

               994    -   1044
UN13393        --> AATGCTCGTCTATTTTGTTGCTTTCTGCTTTAATAAAATGTATTCTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568074       <-- ..................................................
EV531401       <-- AATGCTCGTCTATTTTGTTGCTTTCTGCTTTAATAAAATGTATTCTCTCG
FD567722       <-- ..................................................
FD567848       <-- ttc...............................................
FD959967       <-- ..................................................
FD533347       --> ..................................................
FD564171       --> ..................................................
FD564636       --> ..................................................
FD564337       --> ..................................................
EV527070       --> ..................................................
EX748226       --> ..................................................
EX748142       --> ..................................................
FD963758       --> AATGCTCGTCTATTTTGT................................