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Alignment for radish unigene UN13399

               1      -     51
UN13399        --> GGAAAATGAAGTTCAATGTTTCTTACTTGA--TTT--ATTCCCATGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> GGAAAATGAAGTTCAATGTTTCTTACTTGA--TTT--ATTCCCATGTGGA
EX761349       --> ....AATCAAATTCAATGTTTCTTAATTGA--TTTTTATTCCCATGTGGA
FD554868       --> .......GAAGTTCAATGTTTCTTACTTGAATTTT--ATTCCCATGTGGA
FY433966       --> ............gtcATGTTTCTTACTTGA--TT---ATTCCCATGTGGA
EY893574       --> ..................................................

               51     -    101
UN13399        --> AAACAAATAGCAACGAATACACAAAACACATAACAGAAAAGGGACAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> AAACAAATAGCAACGAATACACAAAACACATAACAGAAAAGGGACAACAC
EX761349       --> AAACAAAAAGCAACGAATACACAAAACACATAACAGAAAAGGGAGAACAC
FD554868       --> AAACAAATAGCAACGAATACACAAAACACATAACAAAAAGGGGACAACAC
FY433966       --> AAACAAATAGCAACGAATACACAAAACACATAACAGAAAAGGGACAACAC
EY893574       --> ..................................................

               101    -    151
UN13399        --> GTACTATAAATTGTTATTTTCACTTCGTATCAAAAAGACTCGAAGGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> GTACTATAAATTGTTATTTTCACTTCGTATCAAAAAGACTCGAAGGAGAT
EX761349       --> GTACTATAAATTGTTATTTTCACTTCGTATCAAAAAGAATCGAAGGAGAT
FD554868       --> GTACTATAAATTGTTATTTTCACTTCGTATCAAAAAGACTCGAAGGAGAT
FY433966       --> GTACTATAAATTGTTATTTTCACTTCGTATCAAAAAGACTCGAAGGAGAT
EY893574       --> ..................................................

               151    -    201
UN13399        --> TTAATTATTTCAATCTGATATTTCTTTTTTTCTTCCTTTCACCT-TTTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ...............................................TT-
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> TTAATTATTTCAATCTGATATTTCTTTTTTTCTTCCTTTCACCT-TTTT-
EX761349       --> TTAATTATTTCGATCTGATATTTCTTTTTTT-TTCCTTTCACCTGTTTT-
FD554868       --> TTAATTATTTCAATCTGATATTTCTTTTTTTCTTCCTTTCACCT-TTTT-
FY433966       --> TTAATTATTTCAATCTGATATTTCTTTTTTTCTTCCTTTCACCT-TTTT-
EY893574       --> ..................................CCTTTCACCT-TTTTT

               201    -    251
UN13399        --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
EX761349       --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
FD554868       --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
FY433966       --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC
EY893574       --> CAGAATCCAACAACTTGAGTATACTGTGCATAAGCATCAGACTGCCTAGC

               251    -    301
UN13399        --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
FY428187       <-- ..............TAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
FY428494       <-- ..............TAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
EX761349       --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
FD554868       --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
FY433966       --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT
EY893574       --> AATTGGCGCTCGAGTAACATGATCCGGTAGGTCGAAAGCGTCCACTAGTT

               301    -    351
UN13399        --> CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- CCTTGGCCACATTCCTTACTTGAAAACTCAA-TACTCGGTCAACTTATGA
FY428187       <-- CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
FY428494       <-- CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
EV566629       <-- .....GCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
EX761349       --> CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCAGTCAACTTATGA
FD554868       --> CCTTGGCCACATTCCTTACTTGAAAACTCAA-TACTCGGTCAACTTATGA
FY433966       --> CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA
EY893574       --> CCTTGGCCACATTCCTTACTTGAAAACTCAAATACTCGGTCAACTTATGA

               351    -    401
UN13399        --> ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
FY428187       <-- ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
FY428494       <-- ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
EV566629       <-- ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
EX761349       --> ATTGCCTTGGCTTTGTTAGGCGCCACATAATCCACATTACGGTAGGTTCC
FD554868       --> ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
FY433966       --> ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC
EY893574       --> ATCGCCTTGGCTTTGTTAGGCGCCACATAATCCACGTTACGGTAGGTTCC

               401    -    451
UN13399        --> TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
FY428187       <-- TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
FY428494       <-- TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
EV566629       <-- TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
EX889940       <-- ..................................................
EX757881       <-- ..................................................
EY897191       <-- ..................................................
EX893561       --> TATATCTTTCCATATTCACTCCAATGCGTAAAGATCACATGCTAGTTTCA
EX761349       --> TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
FD554868       --> TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
FY433966       --> TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA
EY893574       --> TATATCTTTCCATATTCGCTCCAATGCGTAAAGATCACATGCTAGTTTCA

               451    -    501
UN13399        --> GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
FY428187       <-- GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
FY428494       <-- GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
EV566629       <-- GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
EX889940       <-- ...................GTCCGGACACTTTCGAACAGCTTCAATGAAC
EX757881       <-- .........................ACACTTTCGAACAGCTTCAATGAAC
EY897191       <-- ..................................................
EX893561       --> GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
EX761349       --> GACCAGCTCTTGCACTCCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
FD554868       --> GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
FY433966       --> GACCAGCTCTTGCACTTCGGTCCGGACACTTTCGAACAGCTTCAATGAAC
EY893574       --> GACCAGCTCTTGCACTCCGGTCCGGACACTTTCGAACAGCTTCAATGAAC

               501    -    551
UN13399        --> TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TTGGCGAGAATGACTGATTCAATGTGAAACTCCGCAAGTGTCAAGAGATG
FY428187       <-- TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
FY428494       <-- TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EV566629       <-- TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EX889940       <-- TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EX757881       <-- TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EY897191       <-- ..................................................
EX893561       --> TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EX761349       --> TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
FD554868       --> TTGGCGAGAATGACTGATTCAATGTGAAACTCCGCAAGTGTCAAGAGATG
FY433966       --> TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG
EY893574       --> TTGGCGAGAATGACTGATTCAATGTGAGACTCCGCAAGTGTCAAGAGATG

               551    -    601
UN13399        --> ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
FY428187       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
FY428494       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
EV566629       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
EX889940       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
EX757881       <-- ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGTGTCTTGGTGTGTT
EY897191       <-- ..................................................
EX893561       --> ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
EX761349       --> ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGTGTCTTGGTGTGTT
FD554868       --> ATT...............................................
FY433966       --> ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT
EY893574       --> ATTCAAGCATCTGTTCCAAGCGCCGAATGGTCCAAGGGTCTTGGTGTGTT

               601    -    651
UN13399        --> TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TCGTCAATCTCATTGCAACGCTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. landra
FY428187       <-- TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus sativus cv GSK3-1
FY428494       <-- TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus sativus cv GSK3-1
EV566629       <-- TCGTCAATCTCATTGCAACGCTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. landra
EX889940       <-- TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus sativus var. oleiformis
EX757881       <-- TCGTCAATCTCATTGCAACGCTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897191       <-- ...........ATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. maritimus
EX893561       --> TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus sativus var. oleiformis
EX761349       --> TCGTCAATCTCATTGCAACGCTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554868       --> ..................................................  Raphanus raphanistrum subsp. landra
FY433966       --> TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus sativus cv GSK3-1
EY893574       --> TCGTCAATCTCATTGCAACACTTTGTAGGAGACGCGATGTTCGATACCGG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13399        --> AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACCTTCCCA  Raphanus raphanistrum subsp. landra
FY428187       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTT-CCCA  Raphanus sativus cv GSK3-1
FY428494       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTT-CCCA  Raphanus sativus cv GSK3-1
EV566629       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACCTTCCCA  Raphanus raphanistrum subsp. landra
EX889940       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA  Raphanus sativus var. oleiformis
EX757881       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897191       <-- AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACCTTCCCA  Raphanus raphanistrum subsp. maritimus
EX893561       --> AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA  Raphanus sativus var. oleiformis
EX761349       --> AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554868       --> ..................................................  Raphanus raphanistrum subsp. landra
FY433966       --> AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACTTTCCCA  Raphanus sativus cv GSK3-1
EY893574       --> AAAGCATCTAGTTGGAATTTAGGATCTCTTAGATGATCTTCACCTTCCCA  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN13399        --> ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
FY428187       <-- ACGAG.............................................
FY428494       <-- ACGAG.............................................
EV566629       <-- ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EX889940       <-- ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EX757881       <-- ACGAGCTGTAACAGGATTCGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EY897191       <-- ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EX893561       --> ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EX761349       --> ACGAGCTGTAACAGGATTCGGCTGAGACAAGTAAGCGTTCATCGACTCTC
FD554868       --> ..................................................
FY433966       --> ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC
EY893574       --> ACGAGCTGTAACAGGATTTGGCTGAGACAAGTAAGCGTTCATCGACTCTC

               751    -    801
UN13399        --> TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGGAACGTCTCTTTG
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGGAACTTCTCTTTG
EX889940       <-- TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG
EX757881       <-- TCAAGTAACTCCATGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG
EY897191       <-- TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG
EX893561       --> TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAActt........
EX761349       --> TCAAGTAACTCCATGTAGCTGTCAATGTCCCACCTT..............
FD554868       --> ..................................................
FY433966       --> TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG
EY893574       --> TCAAGTAACTCCACGTAGCTGTCAATGTCCCACCTTGAAACTTCTCTTTG

               801    -    851
UN13399        --> TATCGCTTAAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TATCGCTTCAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus raphanistrum subsp. landra
FY428187       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428494       <-- ..................................................  Raphanus sativus cv GSK3-1
EV566629       <-- TATCGCTTCAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus raphanistrum subsp. landra
EX889940       <-- TATCGCTTAAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus sativus var. oleiformis
EX757881       <-- TATCGCTTCAGTAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897191       <-- TATCGCTTAAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus raphanistrum subsp. maritimus
EX893561       --> ..................................................  Raphanus sativus var. oleiformis
EX761349       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554868       --> ..................................................  Raphanus raphanistrum subsp. landra
FY433966       --> TATCGCTTAAAGCAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus sativus cv GSK3-1
EY893574       --> TATCGCTTAAGCAAATCAGCTGCCACCTGTTGCAGAAGCACAGTGTTGTC  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN13399        --> TCCTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGCTTCCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- TCCTTCAAATc.......................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- TCCTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGCTTCCAAACC
EX889940       <-- TCCTTCAAATGTTTGGAAAATGTCATGATCGATTCTCAAGCTTCCAAACC
EX757881       <-- TCCTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGCTTCCAAACC
EY897191       <-- TCCTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGCTTCCAAACC
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> TCTTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGC.........
EY893574       --> TCCTTCAAATGTTTGGAAAATGTCATGATCGTTTCTCAAGCTTCCAAACC

               901    -    951
UN13399        --> TGTTAACAGCTGCATAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- TGTTAACAGCTGCATAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG
EX889940       <-- TGTTAACAGCTGCGTAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG
EX757881       <-- TGTTAACAGCTGCGTAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG
EY897191       <-- TGTTAACAGCTGCATAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> TGTTAACAGCTGCATAACCATGTCCTCCACAAGCTTCTCTGCAGACCGAG

               951    -   1001
UN13399        --> AGTGACTTAGCGGTGTACGACGTTATATAAGATTTGAGCCCAGCAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- AGTGACTTAGCGGTGTACGACGc...........................
EX889940       <-- AGTGACTTAGCGGTGTACGACGTTATATAAGATTTGAGCCCCGCAGAGAG
EX757881       <-- AGTGACTTAGCGGTGTACGACGTTATATAAGATTTGAGCCCAGCAGAGAG
EY897191       <-- AGTGACTTAGCGGTGTACGACGTTATATAAGATTTGAGCCCAGCAGAGAG
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> AGTGACTTAGCGGTGTACGACGTTATATAAGATTTGAGCCCAGCAGAGAG

               1001   -   1051
UN13399        --> CGCATGGACATCAGCAACCAACTGCTCCTCCTGAGTCTTCTTCATCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- CGCATGGACATCAGCAACCAATTGCTCCTCCTGAGTCTTCTTCATCTCTG
EX757881       <-- CGCATGGACATCAGCAACCAACTGCTCCTCCTGAGTCTTCTTCATCTCTG
EY897191       <-- CGCATGGACATCAGCAACCAACTGCTCCTCCTGAGTCTTCTTCATCTCTG
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> CGCATGGACATC......................................

               1051   -   1101
UN13399        --> AATATTTCTCCACGAGGTACACGGTTGCAAAATGGTACGCATAGGTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- AATATTTCTCCACGAGGTACACTGTTGCAAAATGGTACGCATAGGTGGAG
EX757881       <-- AATATTTCTCCACGAGGTACACGGTTGCAAAATGGTACGCATAGGTGGAG
EY897191       <-- AATATTTCTCCACGAGGTACACGGTTGCAAAATGGTACGCATAGGTGGAG
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> ..................................................

               1101   -   1151
UN13399        --> GCTAACATCGGCATGAGCTTGTGTTGCTGAGACTGGTAATCAAGAATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- GCTAACATCGGCATGAGCTTGTGTTGTTGAGACTGc..............
EX757881       <-- GCCAGCATCGGCATGAGCTTGTGTTGCTGAGACTGGTAATCAAGAATGCT
EY897191       <-- GCTAACATCGGCATGAGCTTGTGTTGCTGAGACTGGTAATCAAGAATGCT
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> ..................................................

               1151   -   1201
UN13399        --> GACCTCAGGTTGCTTTGGAGGACCGAACTGTTGCCTTAACAGCGAGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- GACCTCAGGTTGCTTTGGAGGACCGAACTGTTGCCTTAACAGCGAGTAAC
EY897191       <-- GACCTCAGGTTGCTTTGGAGGACCGAACTGTTGCCTCAACAGCGAGTAAC
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> ..................................................

               1201   -   1251
UN13399        --> GGATAGCAATCGTGGCGGATATTTTAAGGACGCCAACAGATGCATAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- ..................................................
FY428187       <-- ..................................................
FY428494       <-- ..................................................
EV566629       <-- ..................................................
EX889940       <-- ..................................................
EX757881       <-- GGAT..............................................
EY897191       <-- GGATAGCAATCGTGGCGGATATTTTAAGGACGCCAACAGATGCATAAGCA
EX893561       --> ..................................................
EX761349       --> ..................................................
FD554868       --> ..................................................
FY433966       --> ..................................................
EY893574       --> ..................................................

               1251   -   1301
UN13399        --> AGACCAACACGTCCACCTACAAGCTCACCGAGTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD559102       <-- .....................................
FY428187       <-- .....................................
FY428494       <-- .....................................
EV566629       <-- .....................................
EX889940       <-- .....................................
EX757881       <-- .....................................
EY897191       <-- AGACCAACACGTCCACCTACAAGCTCACCGAGTGTTC
EX893561       --> .....................................
EX761349       --> .....................................
FD554868       --> .....................................
FY433966       --> .....................................
EY893574       --> .....................................