RadishBase

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Alignment for radish unigene UN13447

               1      -     51
UN13447        --> GGGGAGCCCCACTGAGCGATGCCCTCACAGCAACGGCTTCATTTCCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> GGGGAGCCCCACTGAGCGATGCCCTCACAGCAACGGCTTCATTTCCCAAA
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> ..................................................

               51     -    101
UN13447        --> CTCTCTTCTCTTGTTTTGAGTGATCTAATCTTTTACGAAGATGGGTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> CTCTCTTCTCTTGTTTTGAGTGATCTAATCTTTTACGAAGATGGGTGTTT
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> ..................................................

               101    -    151
UN13447        --> TTGTCTACTTATTATTGTCCTGAATTCACACGTCGAATCCAACGTGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> TTGTCTACTTATTATTGTCCTGAATTCACACGTCGAATCCAACGTGGCAT
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> ..................................................

               151    -    201
UN13447        --> CTCTCTCCACTGTATGCCAGCTCACTCACACTCCCTCCCCTTTATAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> CTCTCTCCACTGTATGCCAGCTCACTCACACTCCCTCCCCTTTATAAATG
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> ..................................................

               201    -    251
UN13447        --> TCCTCCTCTCTCACTCGTATCCTCCACTGAGTTTAGTGTGTGAGACTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> TCCTCCTCTCTCACTCGTATCCTCCACTGAGTCTAGTGTGTGAGACTGTA
EV526738       --> .......................ggACTGAGTTTAGTGTGTGAGACTGTA
EY900303       --> ..........................ggGAGTTTAGTGTGTGAGACTGTA
EX771663       --> .....................................ggGTGAGACTGTA
EV552577       --> ..........................................AGACTGTA
EV548478       --> ...............................................GTA
EV570107       --> ...............................................GTA
EW734942       --> ...............................................GTA
EY913664       --> ...............................................GTA
EY915423       --> ...............................................GTA
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> ..................................................

               251    -    301
UN13447        --> GAGTAAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909861       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD942575       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD547483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> GAGTAAAAAAAA-GAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> GAGTAAAAACAGAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. maritimus
EY900303       --> GAGTAAAAAAAGAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. maritimus
EX771663       --> GAGTAAAAAAAGAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. landra
EV552577       --> GAGTAAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> GAGTAAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> GAGTAAAAAAAGAGAGTCAAATAAAAAACAAAAATGGTGGGTATGGGTTG  Raphanus raphanistrum subsp. landra
EW734942       --> GAGTAAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> GAGTAAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> GAGTGAAAAAAAAGAGTCAAATAAAAAAACAAAATGGTGGGTATGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> ..................................................  Raphanus raphanistrum subsp. landra
EX765723       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN13447        --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909861       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD942575       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD547483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> GTTCATGTGTATGTTGATGATGGTGTATGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. maritimus
EY900303       --> GTTCATGTGTATGTTGATGATGGTGTATGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. maritimus
EX771663       --> GTTCATGTGTATGTTGATGATGGTGTATGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. landra
EV552577       --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> GTTCATGTGCGTGTTGATGATGGTGTGTGTGATTTCTTGTGGTGAAGCAG  Raphanus raphanistrum subsp. landra
EW734942       --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> GTTCATGTGTATGTTGATGATGGTGTGCGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> GTTCATGTGTATGTTGATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> ...............GATGATGGTGTATGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. landra
EX765723       --> ...............GATGATGGTGTGTGTGATTTCCTGTGGTGAAGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN13447        --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ..................................................
EV547466       <-- ..................................................
EV544035       <-- ..................................................
EV574486       <-- ..................................................
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EV526738       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EY900303       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EX771663       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EV552577       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EV548478       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EV570107       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGCTGGGCAATGGAT
EW734942       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EY913664       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EY915423       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EV569246       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
EX765723       --> CTCCAGGAGCTAAGTTCGAGGATCTTTACCGTTCAAGTTGGGCTATGGAT
FD957496       --> .........ggAAGTTCGAGGATCTTTACCGTTCAAGCTGGGCTATGGAT
FD551623       --> ..................................................
FD981360       --> ..................................................

               401    -    451
UN13447        --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ....................AGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- .......................CACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- ...............................................CTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909861       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD942575       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD547483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> CATTGTGTCAACGATGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. maritimus
EY900303       --> CATTGTGTCAACGATGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. maritimus
EX771663       --> CATTGTGTCAACGATGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. landra
EV552577       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> CATTGTGTCAACGATGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. landra
EW734942       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> CATTGTGTCAACGATGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. landra
EX765723       --> CATTGTGTCAACGACGGAGAAGTCACGAAACTCAAGCTTGACAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> CATTGTGTCAACGACTGAGAAGTCACAAAACTCAAGCTTGACAATTTCTC  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> .........................................gAATTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN13447        --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV547466       <-- TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV544035       <-- TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV574486       <-- ............CGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EY909861       <-- ..................................................
EX775753       <-- ..................................................
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV526738       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EY900303       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EX771663       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV552577       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV548478       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV570107       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EW734942       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EY913664       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EY915423       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EV569246       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
EX765723       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
FD957496       --> TGGAGCTGGGTTCGAGTCGAGAAACAAGTACTTATTCGGTAAAGTCTCTA
FD551623       --> TGGAGCTGGGTTCGAGTCGAGGAGCAAGTACTTGTTCGGTAAAGTCTCTA
FD981360       --> ..................................................

               501    -    551
UN13447        --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- TCCAGGTTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- TCCAGATTAAGCTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. landra
EY909861       <-- ..............................................TTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD942575       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD547483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> TCCAGGTTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> TCCAGATTAAACTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. maritimus
EY900303       --> TCCAGATTAAACTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. maritimus
EX771663       --> TCCAGATTAAGCTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. landra
EV552577       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> TCCAGATTAAGCTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. landra
EW734942       --> TC-TTATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> TCCAGATTAAGCTCGTGGAGGGTGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. landra
EX765723       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> TTCAGATTAAGCTCGTGGAGGGGGACTCAGCAGGAACCGTCACTGCTTTC  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> TCCAGATTAAGCTCGTGGAGGGTGATTCAGCAGGAACCGTCACTGCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN13447        --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV547466       <-- TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV544035       <-- TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV574486       <-- TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTTCT
EY909861       <-- TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EX775753       <-- ..................aCGAACCACAACGAGTTTGATTTCGAGTTCCT
FD942575       <-- ..................................................
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV526738       --> TACATGTCTTCAGAAGGTTTGAACCACAACGAGTTTGATTTCGAGTTCCT
EY900303       --> TACATGTCTTCAGAAGGTTTGAACCACAACGAGTTTGATTTCGAGTTCCT
EX771663       --> TACATGTCTTCAGAAGGTACGAACCACAACGAGTTTGATTTCGAGTTCCT
EV552577       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV548478       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV570107       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTTCT
EW734942       --> TACGTGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EY913664       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EY915423       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
EV569246       --> TACATGTCTTCAGAAGGTACGAACCACAACGAGTTTGATTTCGAGTTCCT
EX765723       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
FD957496       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
FD551623       --> TACATGTCTTCAGAAGGTTCGAACCACAACGAGTTTGATTTCGAGTTCCT
FD981360       --> ..................................................

               601    -    651
UN13447        --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- AGGCAACGCAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV547466       <-- AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV544035       <-- AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV574486       <-- AGGTAACACAACCGGTGAGCCTTACATAGTCCAAACAAACGTCTATGTGA
EY909861       <-- AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EX775753       <-- AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
FD942575       <-- ..GCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTATGTGA
FD977137       <-- ..................................................
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV526738       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAGACAAACGTCTACGTGA
EY900303       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAGACAAACGTCTACGTGA
EX771663       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV552577       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV548478       --> AGGCAACGCAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV570107       --> AGGTAACACAACCGGTGAGCCTTACATAGTCCAAACAAACGTCTATGTGA
EW734942       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EY913664       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EY915423       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EV569246       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
EX765723       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
FD957496       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTATGTGA
FD551623       --> AGGCAACACAACCGGCGAGCCTTACATAGTCCAAACAAACGTCTACGTGA
FD981360       --> ..................................................

               651    -    701
UN13447        --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV547466       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV544035       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV574486       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EY909861       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTCGGTTCGATCCCACC
EX775753       <-- ACGGAGTT-AAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
FD942575       <-- ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
FD977137       <-- ................................................gC
FD944219       <-- ..................................................
EY895875       <-- ..................................................
FD547483       <-- ..................................................
EV548350       --> ..................................................
EV526738       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EY900303       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EX771663       --> ACGGAGTT-AAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV552577       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV548478       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV570107       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EW734942       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EY913664       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTCGGTTCGATCCCACC
EY915423       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EV569246       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
EX765723       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
FD957496       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
FD551623       --> ACGGAGTTGGAAACAGAGAGCAAAGACTCAACCTTTGGTTCGATCCCACC
FD981360       --> ................................................gC

               701    -    751
UN13447        --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EV547466       <-- ACTGAGTTCCACACTTACTCTATCCTTTGGAGTAAACGCAGTGTTGTGTT
EV544035       <-- ACTGAGTTCCACACTTACTCTATC-TCTGGAGTAAACGCAGTGTTGTGTT
EV574486       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGTAGTGTTGTGTT
EY909861       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EX775753       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD942575       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD977137       <-- ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD944219       <-- ......TTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EY895875       <-- ......................TCCTCTGGAGTAAACGCAGTGTTGTGTT
FD547483       <-- .........................TCTGGAGTAAACGCAGTGTTGTGTT
EV548350       --> ..................................................
EV526738       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EY900303       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EX771663       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EV552577       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EV548478       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EV570107       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGTAGTGTTGTGTT
EW734942       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EY913664       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EY915423       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EV569246       --> ACTGAGTTCC-CACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
EX765723       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD957496       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD551623       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT
FD981360       --> ACTGAGTTCCACACTTACTCTATCCTCTGGAGTAAACGCAGTGTTGTGTT

               751    -    801
UN13447        --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV547466       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV544035       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTAGAAGATAAAG
EV574486       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EY909861       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EX775753       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD942575       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD977137       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD944219       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EY895875       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD547483       <-- TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV548350       --> ..................................................
EV526738       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EY900303       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EX771663       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV552577       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV548478       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV570107       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EW734942       --> TATGGTGGATGAGACTCCT--TCGTGTCCACAAGAACCTTGAAGATAAAG
EY913664       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EY915423       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EV569246       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
EX765723       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD957496       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD551623       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG
FD981360       --> TATGGTGGATGAGACTCCTATTCGTGTCCACAAGAACCTTGAAGATAAAG

               801    -    851
UN13447        --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCTATTTG  Raphanus raphanistrum subsp. landra
EY909861       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- GCATCCCATTTGCTAAAGACCAAGCGATGGG-AGTGTACAGCTCTATTTG  Raphanus raphanistrum subsp. landra
FD942575       <-- GCATCCCATTTGCTAAAGATCAAGC-ATGGG-AGTGTACAGCTCTATTTG  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACGGCTCTATTTG  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. maritimus
FD547483       <-- GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. maritimus
EY900303       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. maritimus
EX771663       --> GCATCCCATTTGCTAAAGACCAAGCGATGGG-AGTGTACAGCTCTATTTG  Raphanus raphanistrum subsp. landra
EV552577       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCTATTTG  Raphanus raphanistrum subsp. landra
EW734942       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> GCATCCCATTTGCTAAAGACCAAGCGATGGGGAGTGTACAGCTCTATTTG  Raphanus raphanistrum subsp. landra
EX765723       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCTATTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> GCATCCCATTTGCTAAAGATCAAGCGATGGG-AGTGTACAGCTCCATTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN13447        --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. landra
EY909861       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. landra
FD942575       <-- GAATGCAGTTGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- GAATGCAGATGATTGGGCTACTCAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. maritimus
FD547483       <-- GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> GAATGCAGATGATTGGGCTACTCAAGGAGTTCATGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. maritimus
EY900303       --> GAATGCAGATGATTGGGCTACTCAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. maritimus
EX771663       --> GAAT..............................................  Raphanus raphanistrum subsp. landra
EV552577       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. landra
EW734942       --> GAATGCAGATGATTGGGCTACAC...........................  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> GAATGCAGATGATTGGGCTACAC...........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> GAATGCAGATGATTGGGCTACACAAG-AGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGGAAACAGATTGGA  Raphanus raphanistrum subsp. landra
EX765723       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAA-CAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> GAATGCAGATGATTGGGCTACACAAGGAGGTCTTGTGAAAACAGATTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN13447        --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- GTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. landra
EY909861       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. landra
FD942575       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- GTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. maritimus
FD547483       <-- CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> GTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. maritimus
EY900303       --> GTCACGCTCCTTTCATTGCTTCTTACAA-GATTTCA-GATTGATGCTTGT  Raphanus raphanistrum subsp. maritimus
EX771663       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552577       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTT..  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> GTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. landra
EW734942       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGT  Raphanus raphanistrum subsp. landra
EX765723       --> CTCACGCTCCTTTCATTGCTTCTT..........................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTG.  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> CTCACGCTCCTTTCATTGCTTCTTACAAAGATTTCAAGATTGATGCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN13447        --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EV547466       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EV544035       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGGTCAGAG
EV574486       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EY909861       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EX775753       <-- GAGGTTCCGACAATAACTGACCTAAGCAAGTGTAATGGA---GACCAGAG
FD942575       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
FD977137       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
FD944219       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EY895875       <-- GAGGTTCCGACAACAACTGACCTAAACAAGTGTAGTGGAGAAGATCAGAG
FD547483       <-- GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EV548350       --> ..................................................
EV526738       --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EY900303       --> GAGttcc...........................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EV570107       --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> GAGGTcc...........................................
EV569246       --> GAGGTTCCGACAATAACTGACCTAAGCAAGTGTAATGGAGA---CCAGAG
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG
FD981360       --> GAGGTTCCGACAACAACTGACCTAAGCAAGTGTAGTGGAGAAGATCAGAG

               1001   -   1051
UN13447        --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EV547466       <-- ATTCTGGTGGGATGAGCCGACTGTGTTTGAGCTTAGCCTTCATCAGAATC
EV544035       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EV574486       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTCCATCAGAATC
EY909861       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EX775753       <-- ATTCTGGTGGGATGAGCCGACTGTGTTTGAGCTAAGCCTTCATCAGAATC
FD942575       <-- ATTCTGGTGGGATGAGCCGACTGTGTTTGAGCTTAGCCTTCATCAGAATC
FD977137       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
FD944219       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EY895875       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
FD547483       <-- ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EV548350       --> ..................................................
EV526738       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
EV570107       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTCCATCAGAATC
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTAAGCCTTCATCAGAATC
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC
FD981360       --> ATTCTGGTGGGATGAGCCGACTGTGTCTGAGCTTAGCCTTCATCAGAATC

               1051   -   1101
UN13447        --> ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- ATCAGCTTATATGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. landra
EY909861       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- ATCAGCTTATATGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. landra
FD942575       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- ATCAGCTTATATGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. maritimus
FD547483       <-- ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> ATCAGCTTATATGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. maritimus
EY900303       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX771663       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552577       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> ATCAGCTTATATGGGTTCGAGCTAACCA......................  Raphanus raphanistrum subsp. landra
EW734942       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> ATCAGCTTATATGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. landra
EX765723       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> ATCAGCTTATTTGGGTTCGAGCTAACCATATGATCTATGACTATTGCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN13447        --> GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EV547466       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EV544035       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCACCGCCA
EV574486       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EY909861       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EX775753       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
FD942575       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
FD977137       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
FD944219       <-- GATGCTGCTAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EY895875       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
FD547483       <-- GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
EV548350       --> ..................................................
EV526738       --> GATGCTGC..........................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> GA................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> GATGCTG...........................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA
FD981360       --> GATGCTGCGAGGTTTCCTGTTACTCCTCTTGAGTGCCAACACCATCGCCA

               1151   -   1201
UN13447        --> TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV547466       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544035       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV574486       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTGGTTG  Raphanus raphanistrum subsp. landra
EY909861       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX775753       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. landra
FD942575       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGTAACAAGTTGGTTG  Raphanus sativus cv Early Scarlet Globe
FD977137       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAGCAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944219       <-- TTTGTAGTCCAAAGTTTATCTTCTGTTTAACTTGGGCAACAAGTTGGTTG  Raphanus sativus cv Early Scarlet Globe
EY895875       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTGGTTG  Raphanus raphanistrum subsp. maritimus
FD547483       <-- TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAACAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV526738       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900303       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX771663       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552577       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV548478       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV570107       --> ..................................................  Raphanus raphanistrum subsp. landra
EW734942       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY913664       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569246       --> ..................................................  Raphanus raphanistrum subsp. landra
EX765723       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD957496       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD551623       --> TTTGTAG...........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981360       --> TTTGTAGTCCAAAGTTGATCTTCTGTTTAACTTGGGCAGCAAGTTG-TTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               1201   -   1251
UN13447        --> TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
EV547466       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
EV544035       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
EV574486       <-- TTGTCAAGGGTACATGTGGCTCCTTGATGATTCTGTCTATGTATAAATAA
EY909861       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
EX775753       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
FD942575       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
FD977137       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
FD944219       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA
EY895875       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTCTATGTATAAATAA
FD547483       <-- TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTACAAATAA
EV548350       --> ..................................................
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> TTGTCAAGAGTACATGTGGCTCCTTGATGATTCTGTTTATGTATAAATAA

               1251   -   1301
UN13447        --> TCAAATTATCTATTGATTTTGTTGAATTTAGTTTTGGTTTTAAATAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544139       <-- TCAAATTATCTATTGATTTTGTTGAATTTAGTTTTGGTTTTAAATAGAAA
EV547466       <-- TCAAATTATCTATTGATTTTGTg...........................
EV544035       <-- TCAAATTATCTATTGATTTTGTTGAATTTAaaac................
EV574486       <-- TCAAATTATCTATTGATTTTGTTGAATTTAGTTTTGGTTTTAAATAGAAA
EY909861       <-- TCAAATTATCT.......................................
EX775753       <-- TCAAATTATCTATTGATTTTGTTG..........................
FD942575       <-- TCAAATTATCTATTGATTTTGTTGAATTTACTTTTGGTTTTAAATAGAAA
FD977137       <-- TCAAATTATCTATTGATTTTGTTG..........................
FD944219       <-- TCAAATTATCTATTGATTTTGTTGAA........................
EY895875       <-- TCAAATTATCc.......................................
FD547483       <-- TCAAATTATC........................................
EV548350       --> ..................................................
EV526738       --> ..................................................
EY900303       --> ..................................................
EX771663       --> ..................................................
EV552577       --> ..................................................
EV548478       --> ..................................................
EV570107       --> ..................................................
EW734942       --> ..................................................
EY913664       --> ..................................................
EY915423       --> ..................................................
EV569246       --> ..................................................
EX765723       --> ..................................................
FD957496       --> ..................................................
FD551623       --> ..................................................
FD981360       --> TCAAATTATCTATTGATTTTGTTG..........................

               1301   -   1351
UN13447        --> ATGCGATATTTGTGG
                   ~~~~~~~~~~~~~~~
EV544139       <-- ATGCGATATT.....
EV547466       <-- ...............
EV544035       <-- ...............
EV574486       <-- ATGCGATATTTGTGG
EY909861       <-- ...............
EX775753       <-- ...............
FD942575       <-- ATGCCATATTTGTGG
FD977137       <-- ...............
FD944219       <-- ...............
EY895875       <-- ...............
FD547483       <-- ...............
EV548350       --> ...............
EV526738       --> ...............
EY900303       --> ...............
EX771663       --> ...............
EV552577       --> ...............
EV548478       --> ...............
EV570107       --> ...............
EW734942       --> ...............
EY913664       --> ...............
EY915423       --> ...............
EV569246       --> ...............
EX765723       --> ...............
FD957496       --> ...............
FD551623       --> ...............
FD981360       --> ...............