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Alignment for radish unigene UN13478

               -3     -     47
UN13478        --> ....GGATCTTCTTCGCGTCGATCTCTCTCTCTCTCTCTGCTTGGATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> ....GGATCTTCTTCGCGTCGATCTCTCTCTCTCTCTCTGCTTGGATATT
FD962810       --> ggatctATCTTCTTCGCGTCGATCTCTCTCTCTCTCTCTGCTTGGATATT
EY914815       --> .............ggGCGTCGATCTCTCTCTCTCTCTCTGCTTGGATATT
FD568959       --> .................gggcgtcgatcaCTCTCTCTCTGCTTGGATATT
FY439913       --> ................................TCTCTCTGCTTGGATATT
FY454214       --> .................................CTCTCTGCTTGGATATT
FD937789       --> .....................................ggGCTTGGATATT
FY428538       --> .......................................GCTTGGATATT
EV566259       --> ..............................................TATT
FY436840       --> .................................................T
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> ..................................................

               47     -     97
UN13478        --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> TTCTCTCCAGATCTCTCTCCCCCGTGTCAAATCTTTGAGATCTGAATATC  Raphanus raphanistrum subsp. maritimus
FD962810       --> TTCTCTCCAGATCTCTCTCCCCCGTGTCAAATCTTTGAGATCTGAATATC  Raphanus raphanistrum subsp. maritimus
EY914815       --> TTCTCTCCAGATCTCTCTCCCCCGTGTCAAATCTTTGAGATCTGAATATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTTGAGATCTGAATATC  Raphanus sativus cv Early Scarlet Globe
FY439913       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY454214       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FD937789       --> TTCTCTCCAGATCTCTCTC-CCCGTGTCAA-CCTTCGAGATCTGAATATC  Raphanus sativus var. oleiformis
FY428538       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
EV566259       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTTGAGATCTGAATATC  Raphanus raphanistrum subsp. landra
FY436840       --> TTCTCTCCAGATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY446456       --> TTCTCTCC-GATCTCTCTCTCCCGTGTCAAATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY446585       --> TTCTCTCC-GATCTCTCTCTCCCGTGTCAA-TCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
EV536317       --> ..CTCTCCAGATCCCTCTC-CCCGTGTCAA-TCTTCGAGATCTGAATATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> ..........................TCAAATCTTTGAGATCTGAATATC  Raphanus sativus cv Early Scarlet Globe
EX897184       --> ........................agggAAATCTTCGAGATCTGAATATC  Raphanus sativus cv Early Scarlet Globe
FY447624       --> .............................AATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY449567       --> .............................AATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY441407       --> ..............................ATCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY453070       --> ...............................TCTTCGAGATCTGAATATC  Raphanus sativus cv GSK3-1
FY445154       --> ..................................................  Raphanus sativus cv GSK3-1
FD988939       --> ..................................................  Raphanus raphanistrum subsp. landra
EV535618       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               97     -    147
UN13478        --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FD962810       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
EY914815       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FD568959       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY439913       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY454214       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FD937789       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTCACC
FY428538       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
EV566259       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTCACC
FY436840       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY446456       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY446585       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
EV536317       --> TCCTCCT-CCTGATGAAGGGGAAAGGATGTACGGATTCGAGGCGCTCACC
EW723315       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
EX897184       --> TCCTCCTTAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY447624       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY449567       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY441407       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY453070       --> TCCTCCTGAATCCTGAAGGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FY445154       --> .................GGGGGAAGGATGTACGGATTCGAGGCGCTTACC
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> ..................................................

               147    -    197
UN13478        --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus raphanistrum subsp. maritimus
FD962810       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus raphanistrum subsp. maritimus
EY914815       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGACCACCGTGC  Raphanus sativus cv Early Scarlet Globe
FY439913       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY454214       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FD937789       --> TCCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus var. oleiformis
FY428538       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
EV566259       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus raphanistrum subsp. landra
FY436840       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY446456       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY446585       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
EV536317       --> TTCAACATTCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGTCACCGTGC  Raphanus sativus cv Early Scarlet Globe
EX897184       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv Early Scarlet Globe
FY447624       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY449567       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY441407       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY453070       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FY445154       --> TTCAACATCCATGGCGGATACCTGGAGGCGATCGTGAGGGGCCACCGTGC  Raphanus sativus cv GSK3-1
FD988939       --> ..............................................GTGC  Raphanus raphanistrum subsp. landra
EV535618       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               197    -    247
UN13478        --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. maritimus
FD962810       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. maritimus
EY914815       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv Early Scarlet Globe
FY439913       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY454214       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FD937789       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus var. oleiformis
FY428538       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
EV566259       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. landra
FY436840       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY446456       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY446585       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
EV536317       --> TGGTCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv Early Scarlet Globe
EX897184       --> CGGCCTTCCCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv Early Scarlet Globe
FY447624       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY449567       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY441407       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY453070       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FY445154       --> CGGCCTTCTCACCACCGCCGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus sativus cv GSK3-1
FD988939       --> TGGTCTCCTCACCACCGCGGATTACAACAATCTGTGCCAATGTGAAAACC  Raphanus raphanistrum subsp. landra
EV535618       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               247    -    297
UN13478        --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. maritimus
FD962810       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. maritimus
EY914815       --> TGGACGACATCTAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv Early Scarlet Globe
FY439913       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY454214       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FD937789       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus var. oleiformis
FY428538       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
EV566259       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. landra
FY436840       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY446456       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY446585       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
EV536317       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv Early Scarlet Globe
EX897184       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv Early Scarlet Globe
FY447624       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY449567       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY441407       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY453070       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FY445154       --> TAGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus sativus cv GSK3-1
FD988939       --> TGGACGACATCAAAATGCACCTCTCCGCCACCAAATACGGCTCTTACCTC  Raphanus raphanistrum subsp. landra
EV535618       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               297    -    347
UN13478        --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. maritimus
FD962810       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. maritimus
EY914815       --> CAGAACGAACCGTCACCTCTGCATACGACCACGATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus sativus cv Early Scarlet Globe
FY439913       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY454214       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FD937789       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus sativus var. oleiformis
FY428538       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
EV566259       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. landra
FY436840       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY446456       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY446585       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
EV536317       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus sativus cv Early Scarlet Globe
EX897184       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv Early Scarlet Globe
FY447624       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY449567       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY441407       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY453070       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FY445154       --> CAGAATGAACCGTCACCTCTTCATACGACCACAATCGTGGAGAAGTGTAC  Raphanus sativus cv GSK3-1
FD988939       --> CAGAACGAACCGTCACCTCTGCATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. landra
EV535618       --> .....................gATACGACGACAATCGTGGAGAAGTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               347    -    397
UN13478        --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> GCTCAAGCTTGTGGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGC
FD962810       --> GCTCAAGCTTGTGGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGC
EY914815       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FD568959       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY439913       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY454214       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FD937789       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY428538       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
EV566259       --> GCTCAAGCTTGTGGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY436840       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY446456       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY446585       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
EV536317       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
EW723315       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
EX897184       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY447624       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY449567       --> GCTCAAGCTTGGGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY441407       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY453070       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FY445154       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
FD988939       --> GCTCAAGCTTGTGGATGACTACAAGCATATGCTTTGCCAAGCTACTGAGC
EV535618       --> GCTCAAGCTTGTGGATGATTACAAGCATATGCTTTGCCAAGCTACTGAGC
EW718184       --> ..................................................

               397    -    447
UN13478        --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FD962810       --> CTATGTCCACCTTCTTAGAGTACATCAGATA-GGCCACATGATTGACAAT
EY914815       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FD568959       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY439913       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY454214       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FD937789       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY428538       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EV566259       --> CTATGTCCACCTTCT-AGAGTACATCAGATACGGGCACATGATTGACAAT
FY436840       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY446456       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY446585       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EV536317       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EW723315       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EX897184       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY447624       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY449567       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY441407       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY453070       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FY445154       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
FD988939       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EV535618       --> CTATGTCCACCTTCTTAGAGTACATCAGATACGGCCACATGATTGACAAT
EW718184       --> ..................................................

               447    -    497
UN13478        --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................GGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FD962810       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EY914815       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FD568959       --> GTGGTGCTGATTGTTACTGGAACCTTGCACGAGAGAGATGTTCAAGAGTT
FY439913       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY454214       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FD937789       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY428538       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EV566259       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY436840       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY446456       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY446585       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EV536317       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EW723315       --> GTGGTGCTGATTGTTACTGGAACCTTGCACGAGAGAGATGTTCAAGAGTT
EX897184       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY447624       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY449567       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY441407       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY453070       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FY445154       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
FD988939       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EV535618       --> GTGGTGCTGATTGTTACTGGAACTTTGCACGAGAGAGATGTTCAAGAGTT
EW718184       --> ..................................................

               497    -    547
UN13478        --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. landra
EY920661       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> GATTGAGAAATGTCACCCTCTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. maritimus
FD962810       --> GATTGAGAAATGTCACCCTCTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. maritimus
EY914815       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus sativus cv Early Scarlet Globe
FY439913       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY454214       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FD937789       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus sativus var. oleiformis
FY428538       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
EV566259       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. landra
FY436840       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY446456       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY446585       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
EV536317       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus sativus cv Early Scarlet Globe
EX897184       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv Early Scarlet Globe
FY447624       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY449567       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY441407       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY453070       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FY445154       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACGCTGG  Raphanus sativus cv GSK3-1
FD988939       --> GATTGAGAAATGTCACCCTCTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. landra
EV535618       --> GATTGAGAAATGTCACCCTTTAGGCATGTTTGACAGCATTGCCACACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               547    -    597
UN13478        --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FD962810       --> CTGTTGCTCGGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EY914815       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAG-TTGGTGCTTGTTGATACT
FD568959       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY439913       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY454214       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FD937789       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY428538       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EV566259       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY436840       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY446456       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY446585       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EV536317       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EW723315       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EX897184       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY447624       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY449567       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY441407       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY453070       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FY445154       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
FD988939       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EV535618       --> CTGTTGCTCAGAACATGAGGGAGCTCTATAGGTTGGTGCTTGTTGATACT
EW718184       --> ..................................................

               597    -    647
UN13478        --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATC...............
FD962810       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACAT................
EY914815       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCT..............
FD568959       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY439913       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY454214       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FD937789       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY428538       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EV566259       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY436840       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY446456       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY446585       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EV536317       --> CCTCTGGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EW723315       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EX897184       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY447624       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY449567       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY441407       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY453070       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FY445154       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
FD988939       --> CCTCTCGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EV535618       --> CCTCTGGCTCCATATTTTTCTGAGTGCTTGACATCTGAGGATTTGGATGA
EW718184       --> ..................................................

               647    -    697
UN13478        --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CATGAACATAGAGATCATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EY920661       <-- ..................................................
EY910781       <-- ..................................................
EW721867       <-- ..................................................
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY439913       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY454214       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FD937789       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY428538       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EV566259       --> CATGAACATAGAGATCATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY436840       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY446456       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY446585       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EV536317       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EW723315       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EX897184       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY447624       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY449567       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY441407       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY453070       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FY445154       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
FD988939       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EV535618       --> CATGAACATAGAGATTATGAGGAACACCCTCTACAAAGCATACCTTGAGG
EW718184       --> ..................................................

               697    -    747
UN13478        --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ATTTTTACAAGTTCTGTCAGAAACTCGGAGGGGCAACAGCAGAGATAATG  Raphanus raphanistrum subsp. landra
EY920661       <-- .TTTTTACAAGTTCTGTCAGAAACTTGGAGGGGCAACAGCAGAGATAATG  Raphanus raphanistrum subsp. landra
EY910781       <-- .......CAAGTTCTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..................................................  Raphanus sativus var. oleiformis
EY897353       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD962810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914815       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> ATTTTTACAAGTTCTGTCAGAAACTTGGAGGG-CAACAGCAGAGATA-TG  Raphanus sativus cv Early Scarlet Globe
FY439913       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FY454214       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FD937789       --> ATTTTTACAAGTTCTGTCAGAAACTT........................  Raphanus sativus var. oleiformis
FY428538       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
EV566259       --> ATTTTTACAAGTTCTGTCAGAAACTCGGAGGGGCAACAGCAGAGATAATG  Raphanus raphanistrum subsp. landra
FY436840       --> ATTTTTACAAGTTTTGTC................................  Raphanus sativus cv GSK3-1
FY446456       --> ATTTTTACAAGTTTTGTC................................  Raphanus sativus cv GSK3-1
FY446585       --> ATTTTTA-AAGTTTTGTCAGAA-CTTGGAGGGG-AACATCAGAGA-AATG  Raphanus sativus cv GSK3-1
EV536317       --> ATTTTTACAAGTTCTGTCAGAAACTTGGAGGGGCAACAGCAGAAATAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> ATTTTTACAAGTTCTGTCAGAAACTTGGAGGGGCAACAGCAGAGATAATG  Raphanus sativus cv Early Scarlet Globe
EX897184       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv Early Scarlet Globe
FY447624       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FY449567       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FY441407       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FY453070       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FY445154       --> ATTTTTACAAGTTTTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus sativus cv GSK3-1
FD988939       --> ATTTTTACAAGTTCTGTCAGAAACTTGGAGGGGCAACAGCAGAGATAATG  Raphanus raphanistrum subsp. landra
EV535618       --> ATTTTTACAAGTTCTGTCAGAAACTTGGAGGGGCAACATCAGAGATAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..................................................  Raphanus sativus var. oleiformis

               747    -    797
UN13478        --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- TCTGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. landra
EY920661       <-- TCTGACCTTCTGGCCTTCGAAGCTGATAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. landra
EY910781       <-- TCTGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- ..........gGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus var. oleiformis
EY897353       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD962810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914815       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> TCTGACCTTCTGGCCTTCGAAGCTGATAGAAGAGCTGTG...........  Raphanus sativus cv Early Scarlet Globe
FY439913       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FY454214       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FD937789       --> ..................................................  Raphanus sativus var. oleiformis
FY428538       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
EV566259       --> TCTGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. landra
FY436840       --> ..................................................  Raphanus sativus cv GSK3-1
FY446456       --> ..................................................  Raphanus sativus cv GSK3-1
FY446585       --> TCCGACCTTCTGGCCTTCGA-GCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
EV536317       --> TCTGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> TCTGACCTTCTGGCCTTCGAAGCTGATAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv Early Scarlet Globe
EX897184       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv Early Scarlet Globe
FY447624       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FY449567       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FY441407       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FY453070       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FY445154       --> TCCGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus cv GSK3-1
FD988939       --> TCTGACCTTCTGGCCTTCGAAGCTGATAGAAGAGCTGTGAACATCAC-AT  Raphanus raphanistrum subsp. landra
EV535618       --> TCTGACCTTCTGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> ..........gGGCCTTCGAAGCTGACAGAAGAGCTGTGAACATCACCAT  Raphanus sativus var. oleiformis

               797    -    847
UN13478        --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGAAAGAAACTGTACT  Raphanus raphanistrum subsp. landra
EY920661       <-- CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus raphanistrum subsp. landra
EY910781       <-- CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721867       <-- CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus var. oleiformis
EY897353       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD962810       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914815       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568959       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY439913       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FY454214       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FD937789       --> ..................................................  Raphanus sativus var. oleiformis
FY428538       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
EV566259       --> CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGAAAGAAACTGTACT  Raphanus raphanistrum subsp. landra
FY436840       --> ..................................................  Raphanus sativus cv GSK3-1
FY446456       --> ..................................................  Raphanus sativus cv GSK3-1
FY446585       --> CAATAGCATTGGGACTGAGCT.............................  Raphanus sativus cv GSK3-1
EV536317       --> CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723315       --> TAATAGCATTGGCACTGAGCTAACAAGAGAgac.................  Raphanus sativus cv Early Scarlet Globe
EX897184       --> CAATAGCATTGGGACTGA................................  Raphanus sativus cv Early Scarlet Globe
FY447624       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FY449567       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FY441407       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FY453070       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FY445154       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus cv GSK3-1
FD988939       --> C-ATAGCATTGGCACTGAGCTAca..........................  Raphanus raphanistrum subsp. landra
EV535618       --> CAATAGCATTGGCACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW718184       --> CAATAGCATTGGGACTGAGCTAACAAGAGAAGACAGGAAGAAACTGTACT  Raphanus sativus var. oleiformis

               847    -    897
UN13478        --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATTTGC
EY920661       <-- CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
EY910781       <-- CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
EW721867       <-- CCAACTTTGGTTTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> CCCACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTG.
FY454214       --> CCAACTTTGGTCTCCTCTATCCATATGGT.....................
FD937789       --> ..................................................
FY428538       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTG.
EV566259       --> CCAACTT...........................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> CCAACTTTGGTCTTCTCTATCCATATGG......................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCT..
FY449567       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTG.
FY441407       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTG.
FY453070       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
FY445154       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC
FD988939       --> ..................................................
EV535618       --> CCAACTTTGGTCTCCTCTATCCATATGGTCAGGAGGAGCTTGCAATCTGC
EW718184       --> CCAACTTTGGTCTCCTCTATCCATATGGTCACGAGGAGCTTGCTATCTGC

               897    -    947
UN13478        --> GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA
EY920661       <-- GAAGACATAGATCAGGTTCGTGGTGTCATGGAGAAGTACCCTCCTTACCA
EY910781       <-- GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA
EW721867       <-- GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTT....
FY445154       --> GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTT....
FD988939       --> ..................................................
EV535618       --> GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA
EW718184       --> GAAGACATAGATCAGGTTCGTGGTGTTATGGAGAAGTACCCTCCTTACCA

               947    -    997
UN13478        --> AGCAATATTCTCAAAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- AGCAATATTCTCAAAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAAG
EY920661       <-- AGCAATATTCTCAAAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAAG
EY910781       <-- AGCAATATTTTCAAAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAAG
EW721867       <-- AGCAATATTTTCAAAGATGTCTTATGGGGAGAGCCAGATGCTTGACAAAG
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> AGCAATATTCTCAAAGATGTCTTATGGAGAGAGCCAGATGCTTGACAAAG
EW718184       --> AGCAATATTCTCAAAGATGTCTTATGGGGAGAGCCAGATGCTTGACAAAG

               997    -   1047
UN13478        --> CATTTTATGAAGAAGAAAGTCAGAAGGCTTTGCTTAGCCTTTGAGCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- CATTTTATGAAGAAGAA-GTCAGAAGGCTTTGCTTAGCCTTTGAGCAGCA
EY920661       <-- CATTTTATGAAGAAGAA-GTCAGAAGGCTTTGCTTAGCCTTTGAGCAGCA
EY910781       <-- CATTTTATGAAGAAGAA-GTCAGAAGGCTTTGCTTAGCCTTTGAGCAGCA
EW721867       <-- CATTTTATGAAGAAGAA-GTCAGAAGGCTTTGCTTAACCTTTGAGCAGCA
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> CATTTTATGAAGAAGAAAGTC.............................
EW718184       --> CATTTTATGAAGAAGAA-GTCAGAAGGCTTTGCTTAACCTTTGAGCAGCA

               1047   -   1097
UN13478        --> GTTCCATTACGGGGTGTTCTTTGCGTACATGAGATTGAGGGAGCAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- GTTCCATTACGGGGTGTTCTTTGCCTACATGAGATTGAGGGAGCAGGAGA
EY920661       <-- GTTCCATTACGGGGTGTTCTTTGCGTACATGAGATTGAGGGAGCAGGAGA
EY910781       <-- GTTCCATTACGGGGTGTTCTTTGCGTACATGAGATTGAGGGAGCAGGAGA
EW721867       <-- GTTCCATTACGGGGCTTTCTTTGCGTACATGAGATTGAGGGAGCAGGAGA
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> GTTCCATTACGGGGCTTTCTTTGCGTACATGAGATTGAGGGAGCAGGAGA

               1097   -   1147
UN13478        --> TCAGGAACCTGATGTGGATATCCGAGTGTGTTGCACAGAACCAGAAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- TCAGGAACCTGATGTGGATATCCGAGTGTGTTGCACAGAACCAGAAGTCG
EY920661       <-- TCAGGAACCTGATGTGGATATCCGAGTGTGTTGCACAGAACCAGAAGTCG
EY910781       <-- TCAGGAACCTGATGTGGATATCCGAGTGTGTTGCACAGAACCAGAAGTCG
EW721867       <-- TCAGGAACCTGATGTGGATATCTGAGTGTGTTGCACAGAACCAGAAGTCG
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> TCAGGAACCTGATGTGGATATCTGAGTGTGTTGCACAGAACCAGAAGTCG

               1147   -   1197
UN13478        --> AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGAAGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGGAGTGAG
EY920661       <-- AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGAAGTGAG
EY910781       <-- AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGAAGTGAG
EW721867       <-- AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGAAGTGAG
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> AGGATCCACGACAGTGTGGTCTACATGTTCTGAGTCCGGTAAGAAGTGAG

               1197   -   1247
UN13478        --> A--AAAAGCACATTAAAATGTGTAAATGTGTTTTT-AACATTGGAGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- AGAAAAAGCACATTAAAATGTGTAAATGTGTTTTTTAACATTGGAGAACA
EY920661       <-- AGAAAAAGCACATTAAAATGTGTAAATGTGTTTTTTAACATTGGAGAACA
EY910781       <-- A--AAAAGCACATTAAAATGTGTAAATGTGTTTTT-AACATTGGAGAACA
EW721867       <-- A--AAAAGCACATTAAAATGTGTAAATGTGTTTTT-AACATTGGAGAACA
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> A--AAAAGCACATTAAAATGTGTAAATGTGTTTTT-AACATTGGAGAACA

               1247   -   1297
UN13478        --> AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT
EY920661       <-- AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT
EY910781       <-- AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT
EW721867       <-- AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> AGAAGAAAGAACCTATTTGATTGCTGTTGGTTTTCTTCATTGCTCCGATT

               1297   -   1347
UN13478        --> TGCCAGAGAAATCTGCGGTTTTTACATTTGACTGTGTACCCAAATCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- TGCCAGAGAAATTTGCGGTTTTTACg........................
EY920661       <-- TGCCAGAGAAATCTGCGGTTTTTACATTTTACTGTCTACCCAAATC....
EY910781       <-- TGCCAGAGAAATCTGCGGTTTTTACATATTACTGTCTACCCAAATCAGAA
EW721867       <-- TGCCAGAGAAATCTGCGGTTTTTACATTTGACTGTGTACCCAAATCAGAA
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> TGCCAGAGAAATCTGCGGTTTTTACATTTGACTGTGTACCCAAATCAGAA

               1347   -   1397
UN13478        --> TCTCTCCAATTTGTTTGTTTTGGCCATATCTTGTTTGGTTCTCTATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- TCTCTCCAATTTGTTTGTTTTGGCCATATCTTGTTTGGTTCTCTATATTT
EW721867       <-- TCTCTCCAATTTGTTTGTTTTGGCC.........................
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> TCTCTCCAATTTGTTTGTTTTGGCC.........................

               1397   -   1447
UN13478        --> ACCAATAAAACTCTTGTAATAATATCAAACTACTTATTTATCATGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV571432       <-- ..................................................
EY920661       <-- ..................................................
EY910781       <-- ACCAATAAAACTCTTGTAATAATATCAAACTACTTATTTATCATGGGTTT
EW721867       <-- ..................................................
EY897353       --> ..................................................
FD962810       --> ..................................................
EY914815       --> ..................................................
FD568959       --> ..................................................
FY439913       --> ..................................................
FY454214       --> ..................................................
FD937789       --> ..................................................
FY428538       --> ..................................................
EV566259       --> ..................................................
FY436840       --> ..................................................
FY446456       --> ..................................................
FY446585       --> ..................................................
EV536317       --> ..................................................
EW723315       --> ..................................................
EX897184       --> ..................................................
FY447624       --> ..................................................
FY449567       --> ..................................................
FY441407       --> ..................................................
FY453070       --> ..................................................
FY445154       --> ..................................................
FD988939       --> ..................................................
EV535618       --> ..................................................
EW718184       --> ..................................................

               1447   -   1497
UN13478        --> TTCTTGCCT
                   ~~~~~~~~~
EV571432       <-- .........
EY920661       <-- .........
EY910781       <-- TTCTTGCCT
EW721867       <-- .........
EY897353       --> .........
FD962810       --> .........
EY914815       --> .........
FD568959       --> .........
FY439913       --> .........
FY454214       --> .........
FD937789       --> .........
FY428538       --> .........
EV566259       --> .........
FY436840       --> .........
FY446456       --> .........
FY446585       --> .........
EV536317       --> .........
EW723315       --> .........
EX897184       --> .........
FY447624       --> .........
FY449567       --> .........
FY441407       --> .........
FY453070       --> .........
FY445154       --> .........
FD988939       --> .........
EV535618       --> .........
EW718184       --> .........