1      -     51
UN13488        --> GTCAATAGGCCCATTTTCAGAGAAAACTCCATATTCGATCTAATCGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- GTCAATAGGCCCATTTTCAGAGAAAACTCCATATTCGATCTAATCGACGT
FD987315       <-- ..................................................
EX750080       <-- ..................................................
EX761789       <-- ..................................................
FD552304       <-- ..................................................
EX749552       <-- ..................................................
FD983388       --> ..................................................
EX766186       --> ..................................................
EX766930       --> ..................................................
FD548102       --> ..................................................
FY445558       --> ..................................................
FD546533       --> ..................................................

               51     -    101
UN13488        --> AGTTTGTTTAGACTTTAGATGAATACAGACCTGTCCTCGGATGTCTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- AGTTTGTTTAGACTTTAGATGAATACAGACCTGTCCTTGGATGTCTAAGA
FD987315       <-- .....................................CGGATGTCTAAGA
EX750080       <-- ..........................................GTCTAAGA
EX761789       <-- ..........................................GTCTAAGA
FD552304       <-- ..................................................
EX749552       <-- ..................................................
FD983388       --> .....................................CGGATGTCTAAGA
EX766186       --> ..........................................GTCTAAGA
EX766930       --> ..........................................GTCTAAGA
FD548102       --> ..................................................
FY445558       --> ..................................................
FD546533       --> ..................................................

               101    -    151
UN13488        --> GTCATTCTTTATTCTTCAATGTCATTTTAGAACTGTTATTAACCAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- GTCAATCTTTATTCTTCAATGTCATTTTAGAACTGTTATTATCCAAAACG  Raphanus raphanistrum subsp. landra
FD987315       <-- GTCAATCTTTATTCTTCAATGTCATTTTAGAACTGTTATTATCCAAAACG  Raphanus raphanistrum subsp. landra
EX750080       <-- GTCATTCTTTATTCTTCAATGTCATTTTAGAACTGTTATTAACCAAAAGG  Raphanus raphanistrum subsp. maritimus
EX761789       <-- GTCATTCTTTATTCTTCAATGTCATTTTAGAACTGTTATTAACCAAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552304       <-- ............gCTTCAATGTCATTTTAGAACTGTTATTAACCAAAACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749552       <-- ..........................................CCAAAAGG  Raphanus raphanistrum subsp. maritimus
FD983388       --> GTCAATCTTTATTCTTCAATGTCATTTTAGAACTGTTATTATCCAAAACG  Raphanus raphanistrum subsp. landra
EX766186       --> GTCATTCTTTATTCTTCAATGTCATTTTAGAACTGTTATTAACCAAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766930       --> GTCATTCTTTATTCTTCAATGTCATTTTAGAACTGTTATTAACCAAAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548102       --> ............gCTTCAATGTCATTTTAGAACTGTTATTAACCAAAACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445558       --> ................tcATGTCATTTTAGAACTGTTATTAACCAAAAGG  Raphanus sativus cv GSK3-1
FD546533       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN13488        --> ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- ACAATACATAGCAAGACCACATAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. landra
FD987315       <-- ACAATACATAGCAAGACCACATAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. landra
EX750080       <-- ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. maritimus
EX761789       <-- ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552304       <-- ACAATACATAGCAAGACCACATAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749552       <-- ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. maritimus
FD983388       --> ACAATACATAGCAAGACCACATAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. landra
EX766186       --> ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766930       --> ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548102       --> ACAATACATAGCAAGACCACATAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445558       --> ACAATACATAGCAAGACCACACAGCAGAATGTCATACAAGTCTTTTGTCT  Raphanus sativus cv GSK3-1
FD546533       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN13488        --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAA-TAGCAAATTCTGTA  Raphanus raphanistrum subsp. landra
FD987315       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAA-TAGCGAATTCTGTA  Raphanus raphanistrum subsp. landra
EX750080       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA  Raphanus raphanistrum subsp. maritimus
EX761789       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552304       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAA-TAGCAAATTCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749552       <-- TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGAAAATTCTGAA  Raphanus raphanistrum subsp. maritimus
FD983388       --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAA-TAGCGAATTCTGTA  Raphanus raphanistrum subsp. landra
EX766186       --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766930       --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548102       --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAA-TAGCAAATTCTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445558       --> TTCATCAACATCTTATTGAGATAAACCAAGAAAAAATGGCAAATTCTGAA  Raphanus sativus cv GSK3-1
FD546533       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN13488        --> TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- TCCCACACCTCTTAATCTGCGGCAAGTTTCATCATGATCGAAAACAATCA
FD987315       <-- TCCCACACCTCTTAATCTGCGGCAAGTTTCATCATGATCGAAAACAATCA
EX750080       <-- TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATGGAAA-CAATCA
EX761789       <-- TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
FD552304       <-- TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCACGATCGAAA-CAATCA
EX749552       <-- TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
FD983388       --> TCCCACACCTCTTAATCTGCGGCAAGTTTCATCATGATCGAAAACAATCA
EX766186       --> TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
EX766930       --> TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
FD548102       --> TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCACGATCGAAA-CAATCA
FY445558       --> TCCCACAGCTCTTAATCTGCTGCAAGTTTCATCATGATCGAAA-CAATCA
FD546533       --> ..................................................

               301    -    351
UN13488        --> GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
FD987315       <-- GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
EX750080       <-- GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
EX761789       <-- GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
FD552304       <-- GTCTCAGTGAGAAGCAGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
EX749552       <-- GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
FD983388       --> GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
EX766186       --> GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
EX766930       --> GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
FD548102       --> GTCTCAGTGAGAAGCAGGAGCTGGTTGTTTCTGGTGAGATGATTGAGAAG
FY445558       --> GTCTCAGTGAGAAGAGGGAGCTGGTTGTTTGTGGTGAGATGATTGAGAAG
FD546533       --> ..................................................

               351    -    401
UN13488        --> GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FD987315       <-- GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
EX750080       <-- GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
EX761789       <-- GAACCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FD552304       <-- GAGCCATGAGTTTGGTATGGATCTGCTCGCCGACAAGGTAAACGCAGAAG
EX749552       <-- GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FD983388       --> GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
EX766186       --> GAACCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
EX766930       --> GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FD548102       --> GAGCCATGAGTTTGGTATGGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FY445558       --> GAGCCATGAGTTTGGTATAGATCTGCTCGCCGACAAGGTAAACGCAGAAG
FD546533       --> ..................................................

               401    -    451
UN13488        --> GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
FD987315       <-- GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
EX750080       <-- GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
EX761789       <-- GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
FD552304       <-- GCGCCGACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
EX749552       <-- GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
FD983388       --> GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
EX766186       --> GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
EX766930       --> GCACCAACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
FD548102       --> GCGCCGACGCCGATGCCGAGACCAGGAAGCGCGTGTCTCATTTGATTAGA
FY445558       --> GCACCAACGCCGATGCCGAGACCAGGAAGAGCGTGTCTCATTTGATTAGA
FD546533       --> ...................aACCAGGAAGCGCGTGTCTCATTTGATTAAA

               451    -    501
UN13488        --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FD987315       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
EX750080       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
EX761789       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FD552304       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
EX749552       <-- AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FD983388       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
EX766186       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
EX766930       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FD548102       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FY445558       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG
FD546533       --> AAGCATCGGGTGCTTCCTCCACTCATCCCTTCTCCTGAAAAACTCTCCCG

               501    -    551
UN13488        --> TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
FD987315       <-- TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
EX750080       <-- TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
EX761789       <-- TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
FD552304       <-- TAGTTCCCAACGGTTTCGCCATCTTCTCCCTTTCTTCTTCTTCCccttcc
EX749552       <-- TAGTTCCCAACGGTTTCGCCATTTTCTCCCCT-CTTCTTCTTCCTCGGAT
FD983388       --> TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
EX766186       --> TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
EX766930       --> TAGTTCCCAACGGTTTCGCCATTTTCTCCCTT-CTTCTTCTTCCTCGGAT
FD548102       --> TAGTTCCCAACGGTTTCGCCATCTTCTCCCTTTCTTCTTCTTCCccttcc
FY445558       --> TAGTTCCCAACGGTTTCGCCATTTTCgcc.....................
FD546533       --> TAGTTCCCAACGGTTTCGCCATCTTCTCCCTTTCTTCTTCTTCCccttcc

               551    -    601
UN13488        --> CGATCTCCTCCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- CGATCTCCTCCACCACCaacc.............................
FD987315       <-- Ccc...............................................
EX750080       <-- CGATCTCCTC........................................
EX761789       <-- CGATCTCCTCCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAA
FD552304       <-- tcagatccc.........................................
EX749552       <-- Ccg...............................................
FD983388       --> Ccc...............................................
EX766186       --> CGATCTCCTCCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAA
EX766930       --> CGATCTCCTCCACCACCaaactttagccttcc..................
FD548102       --> tcagatccc.........................................
FY445558       --> ..................................................
FD546533       --> tcagatccc.........................................

               601    -    651
UN13488        --> TCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568612       <-- ....................................
FD987315       <-- ....................................
EX750080       <-- ....................................
EX761789       <-- TCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTC
FD552304       <-- ....................................
EX749552       <-- ....................................
FD983388       --> ....................................
EX766186       --> TCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTC
EX766930       --> ....................................
FD548102       --> ....................................
FY445558       --> ....................................
FD546533       --> ....................................