1      -     51
UN13504        --> GGACACCAAAACCCTAATCTCTCAAATCTTCTTCTCCAAACACCAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- GGACACCAAAACCCTAATCTCTCAAATCTT--CCCCCAAACACCAAAAGA
FY439346       <-- ......CAAAACCCTAATCTCTCAAATCTTCTTCTCCAAACACCAAAAGA
FY439846       <-- ......CAAAACCCTAATCTCTCAAATCTTCTTCTCCAAACACCAAAAGA
FY429061       <-- ....................CTCAAATCTTCTTCTCCAAACACCAAAAGA
FY438808       <-- ......................CAAATCTTCTTCTCCAAACACCAAAAGA
FD987976       --> GGACACCAAAACCCTAATCTCTCAAATCTTC--CCCCAAACACCAAAAGA
EV550491       --> ..................................................
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               51     -    101
UN13504        --> AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
FY439346       <-- AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
FY439846       <-- AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
FY429061       <-- AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
FY438808       <-- AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
FD987976       --> AAAAAAATGGTTAACCCTAAAGTTTTCTTCGACATGAGCGTCGGCGACAA
EV550491       --> ..................................................
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               101    -    151
UN13504        --> ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAAA
FY439346       <-- ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGA
FY439846       <-- ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGA
FY429061       <-- ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGA
FY438808       <-- ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAGA
FD987976       --> ACCCGCCGGCCGCATCGTGATGGAGCTTTACGCCGACACAACCCCCGAAA
EV550491       --> ..................................................
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               151    -    201
UN13504        --> CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
FY439346       <-- CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
FY439846       <-- CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
FY429061       <-- CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
FY438808       <-- CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
FD987976       --> CCGCCGAGAATTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTCGGCAAA
EV550491       --> ..................................................
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               201    -    251
UN13504        --> TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
FY439346       <-- TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
FY439846       <-- TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
FY429061       <-- TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
FY438808       <-- TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
FD987976       --> TCCGGAAAGCCGCTCCACTACAAGGGCTCGGCCTTCCACCGCGTGATCCC
EV550491       --> ..................................................
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               251    -    301
UN13504        --> GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGGACCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCC----GGGGGACCGGGG
FY439346       <-- GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGGACCGGAG
FY439846       <-- GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGGACCGGAG
FY429061       <-- GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGGACCGGAG
FY438808       <-- GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGGAACGGGACCGGAG
FD987976       --> GAAGTTCATGTGCCAGGGAGGAGATTTCACCGCCGGG----GGACCGGGG
EV550491       --> .................................................G
EW735600       --> ..................................................
EX771784       --> ..................................................
EX773862       --> ..................................................

               301    -    351
UN13504        --> GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTCGTCAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTTGTCAAGAAA  Raphanus raphanistrum subsp. landra
FY439346       <-- GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTCGTCAAGAAA  Raphanus sativus cv GSK3-1
FY439846       <-- GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTCGTCAAGAAA  Raphanus sativus cv GSK3-1
FY429061       <-- GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAA-TTCGTCAAGAAA  Raphanus sativus cv GSK3-1
FY438808       <-- GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTCGTCAAGAAA  Raphanus sativus cv GSK3-1
FD987976       --> GAGAGTCGATCTACGGCATGAAGTTCAAGGACGAGAACTTTGTCAAGAAA  Raphanus raphanistrum subsp. landra
EV550491       --> GAGAGTCGATCTACGGCATGAAGTTCAAGGACGATAACTTTGTCAAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735600       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX771784       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773862       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN13504        --> CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
FY439346       <-- CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
FY439846       <-- CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
FY429061       <-- CA................................................
FY438808       <-- CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
FD987976       --> CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
EV550491       --> CACACCGGTCCGGGCATCCTGTCCATGGCCAACGCTGGTCCGAACACGAA
EW735600       --> ..........gGGGCATCCTGTCCATGGCCAACGTTGGTCCGAACACGAA
EX771784       --> ..................................................
EX773862       --> ..................................................

               401    -    451
UN13504        --> CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- CGGATCTCAGTTTTTCATCTGCACTTAGAAGACGTCGTGGCTCGATGGGA
FY439346       <-- CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
FY439846       <-- CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
FY429061       <-- ..................................................
FY438808       <-- CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
FD987976       --> CGGATCTCAGTTTTTCATCTGCACTTAGAAGACGTCGTGGCTCGATGGGA
EV550491       --> CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
EW735600       --> CGGATCTCAGTTTTTCATCTGCACTGAGAAGACGTCGTGGCTCGATGGGA
EX771784       --> ..................................................
EX773862       --> ..................................................

               451    -    501
UN13504        --> AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
FY439346       <-- AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
FY439846       <-- AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
FY429061       <-- ..................................................
FY438808       <-- AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
FD987976       --> AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
EV550491       --> AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
EW735600       --> AGCACGTTGTGTTCGGTCAGGTTGTCGAAGGGATGGATGTCGTTAGGAAC
EX771784       --> ..................................................
EX773862       --> ..................................................

               501    -    551
UN13504        --> ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
FY439346       <-- ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
FY439846       <-- ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
FY429061       <-- ..................................................
FY438808       <-- ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
FD987976       --> ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
EV550491       --> ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
EW735600       --> ATTGAGAAGGTTGGATCTGACAGTGGAAGGACCTCGAAGAAGGTTGTGAT
EX771784       --> ..................................................
EX773862       --> ..................................................

               551    -    601
UN13504        --> CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAA-AGTGAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- CGCTGACTGTGGTCAGCTTTAGATCTGGTAAGAGAAA-AGTGAGAGAGAG  Raphanus raphanistrum subsp. landra
FY439346       <-- CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAAGTGTGAGAGAGAG  Raphanus sativus cv GSK3-1
FY439846       <-- CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAAGTGTGAGAGAGAG  Raphanus sativus cv GSK3-1
FY429061       <-- ..................................................  Raphanus sativus cv GSK3-1
FY438808       <-- CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAAGTGTGAGAGAGAG  Raphanus sativus cv GSK3-1
FD987976       --> CGCTGACTGTGGTCAGCTTTAGATCTGGTAAGAGAAA-AGTGAGAGAGAG  Raphanus raphanistrum subsp. landra
EV550491       --> CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAA-AGTGAGAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735600       --> CGCTGACTGTGGTCAGCTTTAGATCTGGTGAGAGAAA-AGTGAGAGAGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX771784       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773862       --> ..................................................  Raphanus raphanistrum subsp. landra

               601    -    651
UN13504        --> AGAG----GAGGTTGATCCAATGGTAGCTTTGTGTCTTTT-CTGTTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- AGAG----GAGGTTGATCCAATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus raphanistrum subsp. landra
FY439346       <-- AGAG-----AGGTTGATCCAATGGTAGCTTTGTGTTTTTTTCTGTTGTGT  Raphanus sativus cv GSK3-1
FY439846       <-- AGAG-----AGGTTGATCCAATGGTAGCTTTGTGTTTTTTTCTGTTGTGT  Raphanus sativus cv GSK3-1
FY429061       <-- ..................................................  Raphanus sativus cv GSK3-1
FY438808       <-- AGAG-----AGGTTGATCCAATGGTAGCTTTGTGTTTTTTTCTGTTGTGT  Raphanus sativus cv GSK3-1
FD987976       --> AGAG----GAGGTTGATCCAATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus raphanistrum subsp. landra
EV550491       --> AGAGAGAGGAGGTTGATCCAATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735600       --> AGAG--AGGAGGTTGATCCAATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EX771784       --> ....................ATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus raphanistrum subsp. landra
EX773862       --> ....................ATGGTAGCTTTGTGTCTTTT-CTGTTGTGT  Raphanus raphanistrum subsp. landra

               651    -    701
UN13504        --> TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
FY439346       <-- TTTTTTTTCTTTGTTCCCGTTCTTCTCTTCTTCGTTTCGATCTTTGTGTT
FY439846       <-- TTTTTTTTCTTTGTTCCCGTTCTTCTCTTCTTCGTTTCGATCTTTGTGTT
FY429061       <-- ..................................................
FY438808       <-- TTTTTTTTCTTTGTTCCCGTTCTTCTCTTCTTCGTTTCGATCTTTGTGTT
FD987976       --> TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
EV550491       --> TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
EW735600       --> CTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
EX771784       --> TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT
EX773862       --> TTTTTTCT-TTTGTTCCCGTTCTTCTCTTCTTCGTTTGGATCTTTGTGTT

               701    -    751
UN13504        --> TCTGTGGCTACCATTGAATAATAATGATAATGATTAATCTTAGTTATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983933       <-- TCTGTGGATACCATTGAATAATAATGATAATGATTAATCTTAGTTAct..
FY439346       <-- TCTGTGGCTA........................................
FY439846       <-- TCTGTGGCTACCATTGAATAATAATGATAATGATTAATCTTAGT......
FY429061       <-- ..................................................
FY438808       <-- TCTGTGGCTACCATTGAATAATAATGATAA....................
FD987976       --> TCTGTGGATACCATTGAATAATAATGATAATGATTAATCTTAGTTA....
EV550491       --> TCTGTGGCTACCATTGAATAATAATGATAATGATTAATCTTAGTT.....
EW735600       --> TCTGTGGCTACCATTGAATAATAATGATAATGATTGATCTTAGTT.....
EX771784       --> TCTGTGGCTACCATTGA-CAATAATGATAATGATTAATCTTAGTTATTAA
EX773862       --> TCTGTGGCTACCATTGA-CAATAATGATAATGATTAATCTTAGTTATTAA

               751    -    801
UN13504        --> TGCTCT
                   ~~~~~~
FD983933       <-- ......
FY439346       <-- ......
FY439846       <-- ......
FY429061       <-- ......
FY438808       <-- ......
FD987976       --> ......
EV550491       --> ......
EW735600       --> ......
EX771784       --> TGCTCT
EX773862       --> TGCTCT