1      -     51
UN13528        --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- ...............ggAATCACTAAACCAATCTTCTTACCGACATAAAA  Raphanus raphanistrum subsp. maritimus
FD966999       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> GGAGAACCAAATATCCAAATCA--AAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> GGAGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> .ggGAACCAAATATCCAAATCACTAAACCAATCTTCTTACAGACATAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> ...............ggAATCACTAAACCAATCTTCTTACCGACATAAAA  Raphanus raphanistrum subsp. maritimus
FD535232       --> ...............ggAATCACTAAACCAATCTTCTTACCGACATAAAA  Raphanus raphanistrum subsp. maritimus
FD961870       --> ...................ggACTAAACCAATCTTCTTACCGACATAAAA  Raphanus raphanistrum subsp. maritimus
FD964606       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               51     -    101
UN13528        --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- AAATGCAGGGAGCTTTGTGCATCAAACCAACCATTCTTCCACTTTCTTCT  Raphanus raphanistrum subsp. maritimus
FD966999       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> AA-TGCAGGGAGCTTTGTGCATCAAACCTACCATTGTTCCACTTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> AAATGCAGGGAGCTTTGTGCATCAAACCAACCATTCTTCCACTTTCTTCT  Raphanus raphanistrum subsp. maritimus
FD535232       --> AAATGCAGGGAGCTTTGTGCATCAAACCAACCATTCTTCCACTTTCTTCT  Raphanus raphanistrum subsp. maritimus
FD961870       --> AAATGCAGGGAGCTTTGTGCATCAAACCAACCATTCTTCCACTTTCTTCT  Raphanus raphanistrum subsp. maritimus
FD964606       --> .................gGCATCAAACCAACCATTCTTCCACTTTCTTCT  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               101    -    151
UN13528        --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- CCAAAGCTTACTCTTCTTCTTCCCCACACCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. maritimus
FD966999       <-- ................TTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> CCAAAGCTCACTCTTCTTCTTCC--ACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> CCAAAGCTCACTCTTCTTCTTCCTCACATCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> CCAAAGCTTACTCTTCTTCTTCCCCACACCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. maritimus
FD535232       --> CCAAAGCTTACTCTTCTTCTTCCCCACACCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. maritimus
FD961870       --> CCAAAGCTTACTCTTCTTCTTCCCCACACCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. maritimus
FD964606       --> CCAAAGCTTACTCTTCTTCTTCCCCACACCATCTCCACCACCAAAGCTTC  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               151    -    201
UN13528        --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. maritimus
FD966999       <-- AAGACTTTCTTCTTCTCTCAGACTCAGGCCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- ..............CTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- ..........................GACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> AAGACTCTCTTCTTCTCTCAGACTCAGGCCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> AAGACTCTCTTCTCCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> AAGACTCTCTTCTTCTCTCAGACTCAGGCCAAACTCATCATCACCTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. maritimus
FD535232       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. maritimus
FD961870       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. maritimus
FD964606       --> AAGACTCTCTTCTTCTCTCAGACTCAGACCAAACTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. maritimus
FD979323       --> .................................CTCATCATCTCCTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               201    -    251
UN13528        --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD539452       <-- CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD530937       <-- CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD966999       <-- CCTCTGATCCACTCACCGTAAACTACGATGGCTCTCCCCTTTCTGTTT-C
EY903865       <-- CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EY904679       <-- CCTTTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EX753922       <-- ..................................................
EV539604       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EX757443       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EY908104       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EY909100       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD541021       --> CCTCTGATCCACTCACCGTAAACTACTATGACTCTCCCCTTTCTGTTTTC
FD542489       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD543669       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD970699       --> CCTCTGATCCACTCACCGTAAACTACGATGGCTCTCCCCTTTCTGTTT-C
FD533256       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD535232       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD961870       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD964606       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD979323       --> CCTCTGATCCACTCACCGTAAACTACGATGACTCTCCCCTTTCTGTTTTC
FD543570       --> .................GTAAACTACGATGACTCTCCCCTTTCTGTTTTC
EW723887       --> ..................................................

               251    -    301
UN13528        --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. maritimus
FD966999       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTTTGCTGACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. maritimus
FD535232       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. maritimus
FD961870       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. maritimus
FD964606       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. maritimus
FD979323       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCCTGTTCTGCTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> CCAGCTGAAGCATGTGAAGTGATCAGCGGTTACGCATGTTCTGCTGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN13528        --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. maritimus
FD966999       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539604       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. maritimus
FD535232       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. maritimus
FD961870       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. maritimus
FD964606       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. maritimus
FD979323       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCCGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> TTACCCTGAAGTCAAGCTTGAAACAAAGCCAGTCTCACCTCCCGTGGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN13528        --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAGCAACCCCAAAACAGTT
FD539452       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD530937       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD966999       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAGCAACCCCAAAACAGTT
EY903865       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
EY904679       <-- CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
EX753922       <-- ...........................gGTATAACAACCCCAAAACAGTT
EV539604       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
EX757443       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
EY908104       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
EY909100       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD541021       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD542489       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAGCAACCCCAAAACAGTT
FD543669       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD970699       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAGCAACCCCAAAACAGTT
FD533256       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD535232       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD961870       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD964606       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCAAAACAGTT
FD979323       --> CAGAGCCT..........................................
FD543570       --> CAGAGCCTGTAGACCGAGAATACCTAGAGTATAACAACCCCTAAACAGTT
EW723887       --> ..................................................

               401    -    451
UN13528        --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
FD966999       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTTTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
EV539604       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
FD535232       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
FD961870       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
FD964606       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAGTTCTGCGAACCTGA  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> TTCCCCGCAGAGGCTTGTGATGATCTTGGAGGAGAATTCTGCGAACCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> .............................AGGAGAGTTCTGCGAACCTGA  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN13528        --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
FD966999       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCATATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
EV539604       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCATATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
FD535232       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
FD961870       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
FD964606       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCCAGATTTTATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> CTATCAAAAAGATGTCTACTAGAAAGAAAGAAGAAGCAAGATTTTATGTG  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN13528        --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- ATGTGAATATGTG--TTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
FD966999       <-- ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAGCCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- ATGTGAATATGTG--TTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
EV539604       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAGCCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> ATGTGAATATGTGT--TGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
FD535232       --> ATGTGAATATGTGT--TGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
FD961870       --> ATGTGAATATGTGT--TGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
FD964606       --> ATGTGAATATGTGT--TGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> ATGTGAATATGTGTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> ATGTGAATATG-GTGTTGTTGTATCTCTACTAGTCTCTGTAACCACTCTT  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN13528        --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACg...  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539452       <-- AGTATATGAAGTCTAGCTTCACc...........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530937       <-- AGTATATGAAATCTAGCTTCACTT..........................  Raphanus raphanistrum subsp. maritimus
FD966999       <-- AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAAcc........  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903865       <-- AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904679       <-- AGTATATGAAGTCTAGCTTCACTT..........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753922       <-- AGTATATGAAATCTAGCTTCACT...........................  Raphanus raphanistrum subsp. maritimus
EV539604       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757443       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908104       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909100       --> AGTATATGAAGTCTAGCTTCACTT..........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541021       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542489       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGACg...  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543669       --> AGTATATGAAGTCTAGCTTCACc...........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970699       --> AGTATATGAAGTCTAGCTTCACTTAATCAA....................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD533256       --> AGTATATGAAATCTAGCTTCACT...........................  Raphanus raphanistrum subsp. maritimus
FD535232       --> AGTATATGAAATCTAGCTTCACTT..........................  Raphanus raphanistrum subsp. maritimus
FD961870       --> AGTATATGAAATCTAGCTTCACTT..........................  Raphanus raphanistrum subsp. maritimus
FD964606       --> AGTATATGAAATCTAGCTT...............................  Raphanus raphanistrum subsp. maritimus
FD979323       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543570       --> AGTATATGAAGTCTAGCTTCACTTAATCAATGAATGTGAATCAGAC....  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723887       --> AGTATATGAAATCTAGCTTCACTTAAag......................  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN13528        --> GTCCCGAAAGTCAATCAAAAGGTTAACATTGATGTTACTATCTTTTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD538552       <-- ..................................................
FD539452       <-- ..................................................
FD530937       <-- ..................................................
FD966999       <-- ..................................................
EY903865       <-- GTCCCGAAAGTCAATC..................................
EY904679       <-- ..................................................
EX753922       <-- ..................................................
EV539604       --> GTCCCTAAAGTCAATC..................................
EX757443       --> GTCCCGAAAGTCAATCAAAAGGTTAACATTGATGTTACTATCTTTTGGCA
EY908104       --> GTCCCGAAAGTCAATCAAAAGGTTAACATTGAaa................
EY909100       --> ..................................................
FD541021       --> GTCCCGAAAGTCAATCAAAAGGTTAACATTGATa................
FD542489       --> ..................................................
FD543669       --> ..................................................
FD970699       --> ..................................................
FD533256       --> ..................................................
FD535232       --> ..................................................
FD961870       --> ..................................................
FD964606       --> ..................................................
FD979323       --> ..................................................
FD543570       --> ..................................................
EW723887       --> ..................................................

               651    -    701
UN13528        --> CTTCATTTGAAGATG
                   ~~~~~~~~~~~~~~~
FD538552       <-- ...............
FD539452       <-- ...............
FD530937       <-- ...............
FD966999       <-- ...............
EY903865       <-- ...............
EY904679       <-- ...............
EX753922       <-- ...............
EV539604       --> ...............
EX757443       --> CTTCATTTGAAGATG
EY908104       --> ...............
EY909100       --> ...............
FD541021       --> ...............
FD542489       --> ...............
FD543669       --> ...............
FD970699       --> ...............
FD533256       --> ...............
FD535232       --> ...............
FD961870       --> ...............
FD964606       --> ...............
FD979323       --> ...............
FD543570       --> ...............
EW723887       --> ...............