RadishBase

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Alignment for radish unigene UN13653

               1      -     51
UN13653        --> TTTTTTTACTAAGGTCCCTGAAACCATATATATATATAATACATGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> TTTTTTTACTAAGGTCCCTGAAACCATATATATATATAATACATGATTTG
EV552384       --> .......gCTAAGGTCCCTGAAACCATATATA----CAATACATGATTTG
EX887897       --> ........ggAAGGTCCCTGAAACCATATATATATATAATACATGATTTG
FD982043       --> .........gAAGGTCCCTGAAACCATATATA---A-AATACATGATTTG
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               51     -    101
UN13653        --> TCCCGTTGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTCCCATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> TCCCGTTGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTTCCATTAT
EV552384       --> TCCCGTTGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTCCCATTAT
EX887897       --> TCCCGTCGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTCCCATTAT
FD982043       --> TCCCGTTGACCTTTCCCCCCTGCAAGTCAATTATCTCTTTGTCCCATTAT
EX746716       --> ......gGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTCCCATTAT
FD938000       --> ......gGACCTTTCCCCCCGGCAAGTCAATTATCTCTTTGTCCCATTAT
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               101    -    151
UN13653        --> CTATATCTCAGACACTCTTTCGGTCGTCATATTTCTTTGGGGCCTAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> CTATATCTCAGACACTCTTTCGGTCGTCATATTTCTTTGGGGCCTAAATT
EV552384       --> CTATATCTCAGACACTCTTACGGTCGTCATATTTCTTTGGGGCCTAAATT
EX887897       --> CTATATCTCAGACACTCTTTCGGTCGTCATATTTCTTTGGGGCCTAAATT
FD982043       --> CTATATCTCAGACACTCTTTCGGTCGTCATATTTCTTTAGGGCCTAAATT
EX746716       --> CTATATCTCAGACACTCTTACGGTCGTCATATTTCTTTGGGGCCTAAATT
FD938000       --> CTATATCTCAGACACTCTTACGGTCGTCATATTTCTTTGGGGCCTAAATT
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               151    -    201
UN13653        --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
EV552384       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
EX887897       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
FD982043       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
EX746716       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
FD938000       --> TTCAGTGTGTAAATGGGTATTTTTCCTGAGTTTGGTGGCTGGATCAGTCA
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               201    -    251
UN13653        --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
EV552384       --> GAACACTCAACAGCCTGAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
EX887897       --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
FD982043       --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGG
EX746716       --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
FD938000       --> GAACACTCAACAGCCTAAAAAATCTGAAAATGTTAAATCCAAGCCTGTGA
EV535033       --> ....................................tacggccgggggGA
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               251    -    301
UN13653        --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
EV552384       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
EX887897       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
FD982043       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
EX746716       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
FD938000       --> GAGAGAAAAAAACTCACGATGAGAGAGATGAGACGAAGGAGCAATTAAAA
EV535033       --> GAGAGAAAAAAACTCACGATGAGAAAGATGAGACGAAGGAGCAATTAAAA
FD972714       --> ..GAGGAAAAAACTCACGATGAGAAAGATGAGACGAAGGAGCAATTAAAA
EX754802       --> ..................................................
FD543482       --> ..................................................

               301    -    351
UN13653        --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921037       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539302       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575686       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571944       --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAC  Raphanus sativus cv Early Scarlet Globe
EV552384       --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887897       --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAC  Raphanus sativus var. oleiformis
FD982043       --> CTGTGGAGAGATGCAAATAAGAAGGAACAATATAATGAACCTTCTCCTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746716       --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAC  Raphanus raphanistrum subsp. maritimus
FD938000       --> CTGTGGAGAGATGCAAATAAGAAGAAACAATATAATGAACCTTCTCCTAC  Raphanus sativus var. oleiformis
EV535033       --> CTGTGGAGAGATGCAAATAAGAAGGAACAATATAATGAACCTTCTCCTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972714       --> CTGTGGAGAGATGCAAATAAGAAGGAACAATATAATGAACCTTCTCCTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754802       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543482       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN13653        --> GGTGAAGGTGCATACAGACCATAATATTGATAGCTTTTCCAGTGTGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921037       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539302       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575686       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571944       --> GGTGAAGGTGCATACAGACCATAATATTGATAGCTTTTCCAGTGTGGACA  Raphanus sativus cv Early Scarlet Globe
EV552384       --> GGTGAAGGTGCATACAGACCATAATATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887897       --> GGTGAAGGTGCGTACAGACCATAATATTGATAGCTTTTCCAGTGTGGACA  Raphanus sativus var. oleiformis
FD982043       --> GGTGAAGGTGCATACAGACCATAAAATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746716       --> GGTGAAGGTGCATACAGACCATAATATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. maritimus
FD938000       --> GGTGAAGGTGCATACAGGCCATAATATTGATCGCTTTTCCAGTGTGGACA  Raphanus sativus var. oleiformis
EV535033       --> GGTGAAGGTGCATACAGACCATAAAATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972714       --> GGTGAAGGTGCATACAGACCATAAAATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754802       --> ....................gTAAAATTGATAGCTTTTCCAGTGTGGACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543482       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN13653        --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921037       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539302       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575686       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571944       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAATT  Raphanus sativus cv Early Scarlet Globe
EV552384       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887897       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAATT  Raphanus sativus var. oleiformis
FD982043       --> TGGATTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746716       --> TGGACTTTACATTGGGATTGCCACCTCAAGCAGCTTACGACCTTTTAATT  Raphanus raphanistrum subsp. maritimus
FD938000       --> TGGACTTTACATTAGGATTGCCACCTTAAGCAGCTTACGACCTTTTAATT  Raphanus sativus var. oleiformis
EV535033       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972714       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754802       --> TGGACTTTACATTAGGATTGCCACCTCAAGCAGCTTACGACCTTTTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543482       --> .....................................gGACCTTTTAACT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN13653        --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ............................................ACTTCT
EY921037       <-- ..................................................
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
EV552384       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
EX887897       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
FD982043       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
EX746716       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
FD938000       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
EV535033       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
FD972714       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
EX754802       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT
FD543482       --> AATCAAGACAACAAAACATACTCCAGAGAAATCAATGGCCGCCCACTTCT

               501    -    551
UN13653        --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EY921037       <-- ........TATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EV552384       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EX887897       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
FD982043       --> GAAAGCAATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EX746716       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
FD938000       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EV535033       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
FD972714       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
EX754802       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC
FD543482       --> GAAAGCCATATCAAGAAAAGTTACATCAGAGATAGGTATGGGGAATAGGC

               551    -    601
UN13653        --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921037       <-- CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCT  Raphanus raphanistrum subsp. landra
FD977691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539302       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575686       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571944       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCT  Raphanus sativus cv Early Scarlet Globe
EV552384       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887897       --> CGG-CCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCT  Raphanus sativus var. oleiformis
FD982043       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746716       --> CGGTCCTGGAGGTTGAGAAAGGGTTGTCATGGAACTTCCTTTTCTTTTCT  Raphanus raphanistrum subsp. maritimus
FD938000       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCT  Raphanus sativus var. oleiformis
EV535033       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972714       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX754802       --> CGGTCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543482       --> CGATCCTGGAGGTTGAGAAAGAGTTGTCATGGAACTTCCTTTTCTTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN13653        --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- GGAACTATCCCAATACGTTTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
EY921037       <-- GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
EV552384       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTTC
EX887897       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
FD982043       --> G-AACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTTC
EX746716       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
FD938000       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
EV535033       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
FD972714       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
EX754802       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTGC
FD543482       --> GGAACTATCCCAATACGTCTAAATGTCCTCGAAGAGCCAAAAGAACTTTC

               651    -    701
UN13653        --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
EY921037       <-- TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTTA
FD977691       <-- ..................................................
FD539302       <-- ..................................................
FD575686       <-- ..................................................
FD571944       --> TGCATATAACTGGAAAATGA..............................
EV552384       --> TGTATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
EX887897       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGT...
FD982043       --> TGTATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
EX746716       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGT...
FD938000       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTTA
EV535033       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
FD972714       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
EX754802       --> TGCATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA
FD543482       --> TGTATATAACTGGAAAATGAGAAAAGGAATGGACTACATGGAAACGTTCA

               701    -    751
UN13653        --> AGGTTAACTATAGAGTGGAGCCAATGTATGTTGATGCAGAACGCTTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- AGGTTAACTATAGAGTGGAGCCAATGTATGTTGATGCAGAACGCTTGTGC
EY921037       <-- AGGTTAACTATAGAGTGGAGCCAATGTTTGTTGATGCAGAACGCTTGTGC
FD977691       <-- ...TTAACTATATAGTGGAGCCGATGTATGTTGATGCAGAACGCTTGTGT
FD539302       <-- .........ATATAGTGGAGCCGATGTATGTTGATGCAGAACGCTTGTGT
FD575686       <-- .................GAGCCAATGTTTGTTGATGCAGAACGCTTGTGC
FD571944       --> ..................................................
EV552384       --> CGCTTAACTATATAGTGGAGCCGATGTATGTTGACGCA............
EX887897       --> ..................................................
FD982043       --> CGCTTAACTATAtag...................................
EX746716       --> ..................................................
FD938000       --> AAGTTAACTATAGAGTGGAGCCAATGTTTGTTGATGCAGAACGCTTGTGC
EV535033       --> AGGTTAACTATAGAGTGGAGCCAATGTATGTTGATGCAGAACGCTTGTGC
FD972714       --> AGGTTAACTATAGAGTGGAGCCAATGTATGTTGATGCAGAACGCTTGTGC
EX754802       --> AGGTTAACTATAGAGTGGAGCCAATGTATGTTGATGCAGAACGCTTGTGC
FD543482       --> CGCTTAACTATATAGTGGAGCCGATGTATGTTGATGCAGAACGCTTGTGT

               751    -    801
UN13653        --> AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- AAGCACCAGAAGCTGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
EY921037       <-- AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD977691       <-- AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD539302       <-- AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD575686       <-- AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> AAGCACAAGAAGCCG...................................
EV535033       --> AAGCACCAGAAGCTGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD972714       --> AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
EX754802       --> AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG
FD543482       --> AAGCACAAGAAGCCGAAGAGTATAGAAGAATACAGAAAATGTAGTGGTGG

               801    -    851
UN13653        --> AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
EY921037       <-- AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
FD977691       <-- AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGACTTTTAGGCCTT
FD539302       <-- AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGACTTTTAGGCCTT
FD575686       <-- AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
FD972714       --> AAAAGGATTGATTGCGTCCAAAGTTA........................
EX754802       --> AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGAATTTTAGGCCTT
FD543482       --> AAAAGGATTGATTGCGTCCAAGGTTAAAGTGGACCAGACTTTTAGGCCTT

               851    -    901
UN13653        --> CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
EY921037       <-- CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
FD977691       <-- CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
FD539302       <-- TTTTTCCTTGGAATTTGCCACTGCTGTTTTGGTACTTTCGCCGGTTCACT
FD575686       <-- TTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
FD972714       --> ..................................................
EX754802       --> CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT
FD543482       --> CTTTTCCTTGGAATCTGCCACTGCTGTCTTGGTACTTTCGCCGGTTCACT

               901    -    951
UN13653        --> GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
EY921037       <-- GTTGAGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
FD977691       <-- GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
FD539302       <-- GTTGCGACCACTAAGAAAGTGGTGGAAGATTTTCAAACGCGGGCTGGCGA
FD575686       <-- GTTGAGACCACTAAGAAAGTGGCGGAAGATCTTCAAACGCGGGCTGGCGA
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
FD972714       --> ..................................................
EX754802       --> GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA
FD543482       --> GTTGCGACCACTAAGAAAGTGGTGGAAGATCTTCAAACGCGGGCTGGCGA

               951    -   1001
UN13653        --> TATCCGTCGGTTGTAA----ACGTCTTCGTAAAACAACACATCAAATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- TATCCGTCGGTTGTAAcgtaacgtcttcgtaa..................
EY921037       <-- TATCCGTCGGTTGTAA-----CGTCTTCGTAAAACAACACATCAAATAGT
FD977691       <-- TATCCGTCGGTTGTAA----ACGTCTTCGTAAAACAACACATCAAATAGT
FD539302       <-- TATCCGTCGGTTGTAA----ACGTTTTTGTAAAACAACACATCAAATAGT
FD575686       <-- TATCCGTCGGTTG-CA----ACGTTTTCGTAAAACAACACATCAAAAAGT
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> TATCCGTCGGTTGTAACGTAACGTCTTCGTAAAACAAGACATCAAATAGT
FD972714       --> ..................................................
EX754802       --> TATCCGTCGGTTGTAACGTAACGTCTTCGTAAAACAAGACATCAAATAGT
FD543482       --> TATCCGTCGGTTGTAA----ACGTCTTCGTAAAACAACACATCAAATAGT

               1001   -   1051
UN13653        --> GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATTTTTT-AAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGATTTTTTTTAAAAT
FD977691       <-- GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATTTTTT-AAAAT
FD539302       <-- GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATTTTTT-AAAAT
FD575686       <-- GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATTTTTA-AAAAT
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATCTTTT-AAA-T
FD972714       --> ..................................................
EX754802       --> GTTTTAAAATCGCATTATCATAAATTCGAtagc.................
FD543482       --> GTTTTAAAATCGCATTATCATAAATTCGAATAGCAGAATTTTTT-AAAAT

               1051   -   1101
UN13653        --> CTTGATATTTTTCACCAATAAGTACCGGGGAAAGATTTGCGCCTAGCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- CTTGATATTTTTCACCAATAAGTACCGGGAAAAGATTTGCGCCTAGCGCA
FD977691       <-- CTTGATATTTTTCACCAATAAGTACCGGGGAAAGATTTGCGCCTAGCGCA
FD539302       <-- CTTGATATTTTTCACCAATAAGTACCGGGGAAAGATTTGCGCCTAGGGCA
FD575686       <-- CTTGATATTTTTCACCAATAAGTACCGGGGAAAGATTTGCGCCTAGCGCA
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> CTTGATATTTT-CA-CAATAAGTACCGGGGAAAGATTgcg..........
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> CTTGATATTTTTCACCAATAAGTACCGGGGAAAGATTTGCGCCTAGCGCA

               1101   -   1151
UN13653        --> GGGGTGAAAGTGATGAACAAATTTTCCTAAACATGATATTAATTATGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- GGGGTGAAAGTGAT....................................
FD977691       <-- GGGGTGAAAGTGATGAACAAATTTTCCTAAACATGATATTAATTATGTTA
FD539302       <-- GGGGTGAAGGTGATGAACAAATTTTCCTAAACATGATATTAATTATGTTA
FD575686       <-- GGGGTGAAAGTGATGAACAAATTTTCCTAAACATGATATTAATTATGTTA
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> GGGGTGA...........................................

               1151   -   1201
UN13653        --> CATCAATTATTTGCATCGGTAAA-TAAGAAATTTTACAACCCCGAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- ..................................................
EY921037       <-- ..................................................
FD977691       <-- CATCAATTATTTGCATCGGTAAA-TAAGAAATTTTACAACCC........
FD539302       <-- CATCAATTATTTGCATCGGTAAA-TAAGAAATTTTACAACCCCGAAAAGG
FD575686       <-- CATCAATTATTTGCATCGGTAAAATAAGAAATTTTACAACCCCc......
FD571944       --> ..................................................
EV552384       --> ..................................................
EX887897       --> ..................................................
FD982043       --> ..................................................
EX746716       --> ..................................................
FD938000       --> ..................................................
EV535033       --> ..................................................
FD972714       --> ..................................................
EX754802       --> ..................................................
FD543482       --> ..................................................

               1201   -   1251
UN13653        --> CAAAAAGATGTAATATACTATATGGCGTAATATACGGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539802       <-- .........................................
EY921037       <-- .........................................
FD977691       <-- .........................................
FD539302       <-- CAAAAAGATGTAATATACTATATGGCGTAATATACGGTAGA
FD575686       <-- .........................................
FD571944       --> .........................................
EV552384       --> .........................................
EX887897       --> .........................................
FD982043       --> .........................................
EX746716       --> .........................................
FD938000       --> .........................................
EV535033       --> .........................................
FD972714       --> .........................................
EX754802       --> .........................................
FD543482       --> .........................................