1      -     51
UN13662        --> GGAAAGTACATCACTACTAAATCAAACAAAGAAAAGCAAGAAAAAGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- .....ggACATCACTACTAAATCAA-CAAAGAAAAGCAAGAAAAAGATGT  Raphanus sativus var. oleiformis
EY901261       --> GGAAAGTACATCACTACTAAATCAAACAAAGAAAAGCAAGAAAAAGATGT  Raphanus raphanistrum subsp. maritimus
FD534464       --> GGAAAGTACATCACTACTAAATCAAACAAAGAAAAGCAAGAAAAAGATGT  Raphanus raphanistrum subsp. maritimus
EV567617       --> .....ggACATCACTACTAAATCAAACAAAGAAAAGCAAGAAAAAGATGT  Raphanus raphanistrum subsp. landra
EY933230       --> .....ggACATCACTACTAAATCAA-CAAAGAAAAGCAAGAAAAAGATGT  Raphanus sativus var. oleiformis
FD561959       --> .....ggACATCACTACTAAATCAA-CAAAGAAAAGCAAGAAAAAGATGT  Raphanus sativus var. oleiformis
FD988316       --> ..................................................  Raphanus raphanistrum subsp. landra
EX748656       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN13662        --> GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGACGTCTC  Raphanus sativus var. oleiformis
EY901261       --> GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTC  Raphanus raphanistrum subsp. maritimus
FD534464       --> GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTC  Raphanus raphanistrum subsp. maritimus
EV567617       --> GGGATGAAACTGTTGCTGGACCAAAGTCGGAGCATGGCCTTGGCCGTCTC  Raphanus raphanistrum subsp. landra
EY933230       --> GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGACGTCTC  Raphanus sativus var. oleiformis
FD561959       --> GGGATGAAACTGTTGCTGGACCTAAGCCGGAGCATGGCCTTGGACGTCTC  Raphanus sativus var. oleiformis
FD988316       --> .............gGCTGGACCAAAGCCGGAGCATGGCCTTGGCCGTCTC  Raphanus raphanistrum subsp. landra
EX748656       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN13662        --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
EY901261       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
FD534464       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
EV567617       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
EY933230       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
FD561959       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
FD988316       --> CGCAATAAGATCACCGCTCAACCCATAGACATCAAAGGTGTGGGAGAAGG
EX748656       --> ..................................................

               151    -    201
UN13662        --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
EY901261       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
FD534464       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
EV567617       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
EY933230       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
FD561959       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
FD988316       --> GAGCAGCAGTAAGACTACCCCGGCGGCAGGGAGTCCTGGAACTCCGACGA
EX748656       --> ..................................................

               201    -    251
UN13662        --> CGCCAGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- CGCCAGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
EY901261       --> CGCCGGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
FD534464       --> CGCCGGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
EV567617       --> CGCCAGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
EY933230       --> CGCCAGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
FD561959       --> CGCCAGGGTCAGCACGTAATGAGAACGTGTGGAGGAGTGTGTTTCATCCA
FD988316       --> CGCCAGGGTCAGCACGTAAGGAGAACGTGTGGAGGAGTGTGTTTCATCCA
EX748656       --> ..................................................

               251    -    301
UN13662        --> GGAAGCAACATAGCCACCAGAGGATTGGGTACTAACCTCTTTGATAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- GGAAGCAACATAGCCACCAGAGGAATGGGTACTAACCTCTTTGATAAGCC  Raphanus sativus var. oleiformis
EY901261       --> GGAAGCAACATAGCCACCAGAGGATTGGGTACTAACCTCTTTGACAAGCC  Raphanus raphanistrum subsp. maritimus
FD534464       --> GGAAGCAACATAGCCACCAGAGGATTGGGTACTAACCTCTTTGACAAGCC  Raphanus raphanistrum subsp. maritimus
EV567617       --> GGAAGCAACATAGCCACCAGAGGATTGGGGACTAACCTCTTTGATAAGCC  Raphanus raphanistrum subsp. landra
EY933230       --> GGAAGCAACATAGCCACCAGAGGAATGGGTACTAACCTCTTTGATAAGCC  Raphanus sativus var. oleiformis
FD561959       --> GGAAGCAACATAGCCACCAGAGGAATGGGTACTAACCTCTTTGATAAGCC  Raphanus sativus var. oleiformis
FD988316       --> GGAAGCAACATAGCCACCAGAGGATTGGGGACTAACCTCTTTGATAAGCC  Raphanus raphanistrum subsp. landra
EX748656       --> ................gCAGAGGATTGGGTACTAACCTCTTTGACAAGCC  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN13662        --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
EY901261       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
FD534464       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
EV567617       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
EY933230       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
FD561959       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
FD988316       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA
EX748656       --> TTCTCACCCCAACTCTCCCACCGTATACGACTGGCTGTACAGCGACGATA

               351    -    401
UN13662        --> CCAGGAGTAAGCACCGCTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- CCAGGAGTAAGCACCGCTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus sativus var. oleiformis
EY901261       --> CCAGGAGTAAGCACCGTTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus raphanistrum subsp. maritimus
FD534464       --> CCAGGAGTAAGCACCGTTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus raphanistrum subsp. maritimus
EV567617       --> CCAGGAGTAAGCACCGCTAAAGCGAG--CATCTAGTGACATGCCGGTGAT  Raphanus raphanistrum subsp. landra
EY933230       --> CCAGGAGTAAGCACCGCTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus sativus var. oleiformis
FD561959       --> CCAGGAGTAAGCACCGCTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus sativus var. oleiformis
FD988316       --> CCAGGAGTAAGCACCGCTAGAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus raphanistrum subsp. landra
EX748656       --> CCAGGAGTAAGCACCGTTAAAGCGAGAGGATCTAGTGACATGCCGGTGAT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN13662        --> GTAAAAAATGTGTTTTTTGTTGTTTTTTTTGCTGTACTCGCAACTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- GTAAAAAATGTGTTTTTTGTTGTTTTTTTTGCTGTACTCGCAACTTTTTC  Raphanus sativus var. oleiformis
EY901261       --> GTAAAAAATGTGTTTGTTGTTGTTTTTTTTGCTGGACTCGCAACTTTTTC  Raphanus raphanistrum subsp. maritimus
FD534464       --> GTAAAAAATGTGTTTGTTGTTGTTTTTTTTGCTGGACTCGCAACTTTTTC  Raphanus raphanistrum subsp. maritimus
EV567617       --> GTAAAAAATGTGTTTTTTGTTGTTTTTTTTGCTGTACTCGCAACTTTTTC  Raphanus raphanistrum subsp. landra
EY933230       --> GTAAAAAATGTGTTTTTTGTTGTTTTTTTTGCTGTACTCGCAACTTTTTC  Raphanus sativus var. oleiformis
FD561959       --> GTAAAAAA..........................................  Raphanus sativus var. oleiformis
FD988316       --> GTAAAAAATGTGTTTTTTGTTGTTTTTTTTGCTGTACTCGCAACTTTTTC  Raphanus raphanistrum subsp. landra
EX748656       --> GTAAAAAATGTGTTTGTTGTTGTTTTTTTTGCTGGACTCGCAACTTTTTC  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN13662        --> TTTCTTTCCTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- TTTCTTTCCTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus sativus var. oleiformis
EY901261       --> TTTCTTTCTTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus raphanistrum subsp. maritimus
FD534464       --> TTTCTTTCTTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus raphanistrum subsp. maritimus
EV567617       --> TTTCTTTCCTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus raphanistrum subsp. landra
EY933230       --> TTTCTTTCCTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus sativus var. oleiformis
FD561959       --> ..................................................  Raphanus sativus var. oleiformis
FD988316       --> TTTCTTTCCTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus raphanistrum subsp. landra
EX748656       --> TTTCTTTCTTTTTTGTTGTTAGTTACCGTTCGATCTCTAGTTTCTGTGAT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN13662        --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAGGTTTGTACTGTTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- GGTTTTTAACGGTGGCGATGCGTCCATTTGTAAGGTTTGTACTGTTTGGT
EY901261       --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAGGTTTGTGCTGTTTGGT
FD534464       --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAGGTTTGTGCTGTTTGGT
EV567617       --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAG-TTTGTACTGTTTGTT
EY933230       --> GGTTTTTAACGGTGGCGATGCGTCCATTTGTAAAGTTTGTACTGTTTGGT
FD561959       --> ..................................................
FD988316       --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAG-TTTGTACTGTTTGGT
EX748656       --> GGTTTTTAACGGTGGCGATGCGTCCTCTTGTAAGGTTTGTACTGTTTGGT

               551    -    601
UN13662        --> AAATGATATAGTACTGTATTTTACTTTTACCAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY928759       <-- AAATG..................................
EY901261       --> AAATG..................................
FD534464       --> AAATG..................................
EV567617       --> AAATGATATAGTACTGTATTTT.................
EY933230       --> AAATGATATAGTACTGTATTTTACTTTTACCAAAAAAAA
FD561959       --> .......................................
FD988316       --> AAATGATATAGTACTGTATTTT.................
EX748656       --> AAATG..................................