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Alignment for radish unigene UN13723

               1      -     51
UN13723        --> GGATCATCTTCTTCATTAAGCAAAACAAAAAACTTCAACCACTTCCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- ..................................................
FD528623       <-- ..................................................
FD961510       <-- ..................................................
EW719670       <-- ..................................................
FD547352       <-- ..................................................
EW717142       --> GGATCATCTTCTTCATTAAGCAAAACAAAAAACTTCA----CTTCCTCTT
FD532050       --> GGATCATCTTCTTCATTAAGCAAAACAAAAAACTTCAACCACTTCCTCTT
FD551461       --> GGATCATCTTCTTCATTAAGCAAAACAAAAAACTTCAACCACTTCCTCTT
EW714565       --> ...ggATCTTCTTCATTAAGCAAAACAAAAAACTTCA----CTTCCTCTT
FD965898       --> ...ggATCTTCTTCATTAAGCAAAACAAAAAACTTCAACCACTTCCTCTT
FY435876       --> ...........................................TCCTCTT
FY431435       --> ..................................................
FY437796       --> ..................................................
FY432039       --> ..................................................
FY439507       --> ..................................................

               51     -    101
UN13723        --> CTTCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- ..................................................
FD528623       <-- ..................................................
FD961510       <-- ..................................................
EW719670       <-- ..................................................
FD547352       <-- ..................................................
EW717142       --> CTCCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FD532050       --> CTTCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FD551461       --> CTTCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
EW714565       --> CTCCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FD965898       --> CTTCAGTTTTCATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FY435876       --> CT-CAGTTTT-ATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FY431435       --> ..........CATCGAAAACAATGGCTGGAGTTGCCTTTGGTTCTTTTGA
FY437796       --> ............TCGAAAACA-TGGCTGGAGTTGCCTTTGGTTCTTTTGA
FY432039       --> .............CGAAAACA-TGGCTGGAGTTGCCTTTGGTTCTTTTGA
FY439507       --> ...................................CTTTGGTTCTTTTGA

               101    -    151
UN13723        --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- ..................................................
FD528623       <-- ..................................................
FD961510       <-- ..................................................
EW719670       <-- ..................................................
FD547352       <-- ..................................................
EW717142       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FD532050       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FD551461       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
EW714565       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FD965898       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FY435876       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FY431435       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FY437796       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FY432039       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT
FY439507       --> TGATTCTTTCAGCTTGGCTTCTCTAAGAGCTTACCTGGCTGAGTTCATCT

               151    -    201
UN13723        --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- ...............................................GCG
FD528623       <-- ..................................................
FD961510       <-- ..................................................
EW719670       <-- ..................................................
FD547352       <-- ..................................................
EW717142       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FD532050       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FD551461       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
EW714565       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FD965898       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FY435876       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FY431435       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FY437796       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FY432039       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG
FY439507       --> CCACTTTGCTCTTTGTTTTCGCTGGTGTTGGTTCCGCCATTGCCTACGCG

               201    -    251
UN13723        --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus var. oleiformis
FD528623       <-- .............................CCCGGGGCTTGTCGCCATCGC  Raphanus raphanistrum subsp. maritimus
FD961510       <-- ....................................CTTGTCGCCATCGC  Raphanus raphanistrum subsp. maritimus
EW719670       <-- ..................................................  Raphanus sativus var. oleiformis
FD547352       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus var. oleiformis
FD532050       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus raphanistrum subsp. maritimus
FD551461       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus var. oleiformis
FD965898       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus raphanistrum subsp. maritimus
FY435876       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus cv GSK3-1
FY431435       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus cv GSK3-1
FY437796       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus cv GSK3-1
FY432039       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus cv GSK3-1
FY439507       --> AAGCTGACGTCAGATGCGGCTCTTGATACCCCGGGGCTTGTCGCCATCGC  Raphanus sativus cv GSK3-1

               251    -    301
UN13723        --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus var. oleiformis
FD528623       <-- GGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTACAATCGGAGCCAACA  Raphanus raphanistrum subsp. maritimus
FD961510       <-- GGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus raphanistrum subsp. maritimus
EW719670       <-- ..................................................  Raphanus sativus var. oleiformis
FD547352       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus var. oleiformis
FD532050       --> GGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTACAATCGGAGCCAACA  Raphanus raphanistrum subsp. maritimus
FD551461       --> GGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> CGTATGTCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus var. oleiformis
FD965898       --> GGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus raphanistrum subsp. maritimus
FY435876       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus cv GSK3-1
FY431435       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus cv GSK3-1
FY437796       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus cv GSK3-1
FY432039       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus cv GSK3-1
FY439507       --> CGTATGCCATGGTTTCGCCCTCTTCGTGGCGGTTGCAATCGGAGCCAACA  Raphanus sativus cv GSK3-1

               301    -    351
UN13723        --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FD528623       <-- TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FD961510       <-- TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
EW719670       <-- ..................................................
FD547352       <-- ..................................................
EW717142       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FD532050       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FD551461       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
EW714565       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FD965898       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FY435876       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FY431435       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FY437796       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FY432039       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT
FY439507       --> TCTCCGGTGGCCATGTGAACCCAGCCGTCACTTTTGGCCTTGCTGTCGGT

               351    -    401
UN13723        --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FD528623       <-- GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FD961510       <-- GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
EW719670       <-- ......................................GGCTCAGCTTCT
FD547352       <-- ..........................................CAGCTTCT
EW717142       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FD532050       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FD551461       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
EW714565       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FD965898       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FY435876       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FY431435       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FY437796       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FY432039       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT
FY439507       --> GGTCAAATCACACTAATCACCGGAGTTTTCTACTGGGTGGCTCAGCTTCT

               401    -    451
UN13723        --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus var. oleiformis
FD528623       <-- CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. maritimus
FD961510       <-- CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. maritimus
EW719670       <-- CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus var. oleiformis
FD547352       <-- CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus var. oleiformis
FD532050       --> CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. maritimus
FD551461       --> CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus var. oleiformis
FD965898       --> CGGCTCTACCGCCGCTTGCTTCCTTCTTAAATACGTCACCGGTGGTTTGG  Raphanus raphanistrum subsp. maritimus
FY435876       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus cv GSK3-1
FY431435       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus cv GSK3-1
FY437796       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus cv GSK3-1
FY432039       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus cv GSK3-1
FY439507       --> CGGCTCCACCGCCGCTTGCTTCCTTCTCAAATACGTCACCGGTGGTTTGG  Raphanus sativus cv GSK3-1

               451    -    501
UN13723        --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus var. oleiformis
FD528623       <-- CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. maritimus
FD961510       <-- CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. maritimus
EW719670       <-- CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus var. oleiformis
FD547352       <-- CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus var. oleiformis
FD532050       --> CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. maritimus
FD551461       --> CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus var. oleiformis
FD965898       --> CGGTTCCAACCCACAGTGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus raphanistrum subsp. maritimus
FY435876       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus cv GSK3-1
FY431435       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus cv GSK3-1
FY437796       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus cv GSK3-1
FY432039       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus cv GSK3-1
FY439507       --> CGGTTCCAACCCACAGCGTTGCTGCGGGAGTAGGAGCGATAGAAGGAGTA  Raphanus sativus cv GSK3-1

               501    -    551
UN13723        --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus var. oleiformis
FD528623       <-- GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. maritimus
FD961510       <-- GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. maritimus
EW719670       <-- GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus var. oleiformis
FD547352       <-- GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus var. oleiformis
FD532050       --> GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. maritimus
FD551461       --> GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus var. oleiformis
FD965898       --> GTGATGGAGATCATCATCACTTTCGCTTTAGTCTACACGGTCTACGCCAC  Raphanus raphanistrum subsp. maritimus
FY435876       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus cv GSK3-1
FY431435       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus cv GSK3-1
FY437796       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus cv GSK3-1
FY432039       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus cv GSK3-1
FY439507       --> GTGATGGAGATCATCATCACTTTCTCTTTAGTCTACACCGTCTACGCCAC  Raphanus sativus cv GSK3-1

               551    -    601
UN13723        --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus var. oleiformis
FD528623       <-- CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCATCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. maritimus
FD961510       <-- CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCACCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. maritimus
EW719670       <-- CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus var. oleiformis
FD547352       <-- CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCATCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus var. oleiformis
FD532050       --> CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCATCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. maritimus
FD551461       --> CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCATCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus var. oleiformis
FD965898       --> CGCCGCTGATCCCAAGAAAGGTTCTCTCGGAACCACCGCTCCTCTCGCCA  Raphanus raphanistrum subsp. maritimus
FY435876       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus cv GSK3-1
FY431435       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus cv GSK3-1
FY437796       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus cv GSK3-1
FY432039       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus cv GSK3-1
FY439507       --> CGCCGCTGATCCCAAAAAGGGTTCTCTCGGAACCATCGCTCCCCTCGCCA  Raphanus sativus cv GSK3-1

               601    -    651
UN13723        --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus var. oleiformis
FD528623       <-- TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. maritimus
FD961510       <-- TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. maritimus
EW719670       <-- TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus var. oleiformis
FD547352       <-- TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus var. oleiformis
FD532050       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. maritimus
FD551461       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus var. oleiformis
FD965898       --> TTGGTCTCATCGTCG-TGCCAACATCCTAGCCGCGGGTCCATTCTCCGGT  Raphanus raphanistrum subsp. maritimus
FY435876       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus cv GSK3-1
FY431435       --> TTGGTCTCAT........................................  Raphanus sativus cv GSK3-1
FY437796       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus cv GSK3-1
FY432039       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus cv GSK3-1
FY439507       --> TTGGTCTCATCGTCGGTGCCAACATCCTAGCCGCCGGTCCATTCTCTGGT  Raphanus sativus cv GSK3-1

               651    -    701
UN13723        --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus var. oleiformis
FD528623       <-- GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. maritimus
FD961510       <-- GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. maritimus
EW719670       <-- GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus var. oleiformis
FD547352       <-- GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAG-AGA  Raphanus sativus var. oleiformis
FD532050       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. maritimus
FD551461       --> GGATCCATGAACCCAGCACGTTCCTTTGGAC-AGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> GGATCCATGAACCCAGCACGTTCCTTTGGA....................  Raphanus sativus var. oleiformis
FD965898       --> GGATCCATGAACCCAGCACGTTCCTTTGGAC-AGCTGTTGCAGCTGGAGA  Raphanus raphanistrum subsp. maritimus
FY435876       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus cv GSK3-1
FY431435       --> ..................................................  Raphanus sativus cv GSK3-1
FY437796       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus cv GSK3-1
FY432039       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus cv GSK3-1
FY439507       --> GGATCCATGAACCCAGCACGTTCCTTTGGACCAGCTGTTGCAGCAGGAGA  Raphanus sativus cv GSK3-1

               701    -    751
UN13723        --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FD528623       <-- CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FD961510       <-- CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
EW719670       <-- CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FD547352       <-- CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
EW717142       --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGAC-ACTCATCGGTGGTGGAC
FD532050       --> CTTCTCTGGTCACTGGGTCTACTGGGT.......................
FD551461       --> CTTCTCTGGTCACTGGGTCTACT...........................
EW714565       --> ..................................................
FD965898       --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGAC-ACTCATCGGTGGTGGAC
FY435876       --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FY431435       --> ..................................................
FY437796       --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FY432039       --> CTTCTCTGGTCACTGGGTCTACTGGGTTGGACCACTCATCGGTGGTGGAC
FY439507       --> CTTCTCTGGTCACTGGGTCTACTGGGTTAGACCACTCATCGGTGGTGGAC

               751    -    801
UN13723        --> TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FD528623       <-- TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FD961510       <-- TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
EW719670       <-- TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FD547352       <-- TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
EW717142       --> TCGCTGGAGT-A-CTAC-GAAATGTCTTCATGACT-CCG-ACATGTTC-T
FD532050       --> ..................................................
FD551461       --> ..................................................
EW714565       --> ..................................................
FD965898       --> TCGCTGGAG.........................................
FY435876       --> TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FY431435       --> ..................................................
FY437796       --> TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FY432039       --> TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT
FY439507       --> TCGCTGGAGTTACCTACGGAAATGTCTTCATGACTTCCGAACATGTTCCT

               801    -    851
UN13723        --> CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT  Raphanus sativus var. oleiformis
FD528623       <-- CTTGCTTCTGAGTTCTAAGCAAGAAAATGTGATGATTCTGTGTTTGGTTT  Raphanus raphanistrum subsp. maritimus
FD961510       <-- CTTGCTTCTGAGTTCTAAGCAAGAAAAT-TGATGATTCTGTGTTTGGTTT  Raphanus raphanistrum subsp. maritimus
EW719670       <-- CTGGCTTCTGAGTTCTA.................................  Raphanus sativus var. oleiformis
FD547352       <-- CTTGCTTCTGAGTTCTAAGCAAGAAAATGTGATGATTCTGTGTTTGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> CTGGC.............................................  Raphanus sativus var. oleiformis
FD532050       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD551461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> ..................................................  Raphanus sativus var. oleiformis
FD965898       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY435876       --> CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT  Raphanus sativus cv GSK3-1
FY431435       --> ..................................................  Raphanus sativus cv GSK3-1
FY437796       --> CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT  Raphanus sativus cv GSK3-1
FY432039       --> CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT  Raphanus sativus cv GSK3-1
FY439507       --> CTGGCTTCTGAGTTCTAAGCAAGAAAATGTGAGGATTCTGTGTTTGGTTT  Raphanus sativus cv GSK3-1

               851    -    901
UN13723        --> CTTTGTCTCTCGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- CTTTGTCTCTCGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTC  Raphanus sativus var. oleiformis
FD528623       <-- CTTTGTCTCTCGATTGATCTGTTGCTTTGTTCGGAGTTTGGTCAGGTTTC  Raphanus raphanistrum subsp. maritimus
FD961510       <-- CTTTGTCTCTCGATCGATCTGTTGCTTTGTTCGGAGTTTGGTCAGGTTTC  Raphanus raphanistrum subsp. maritimus
EW719670       <-- ..................................................  Raphanus sativus var. oleiformis
FD547352       <-- CTTTGTCTCTCGATCGATCTGTTGCTTTGTTCGGAGTTTGGTCAGGTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> ..................................................  Raphanus sativus var. oleiformis
FD532050       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD551461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> ..................................................  Raphanus sativus var. oleiformis
FD965898       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY435876       --> CTTTGTCTCTCGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTC  Raphanus sativus cv GSK3-1
FY431435       --> ..................................................  Raphanus sativus cv GSK3-1
FY437796       --> CTTTGTCTCTCGATCGATATGTTGCATTGTTC..................  Raphanus sativus cv GSK3-1
FY432039       --> CTTTGTCTCTCGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTC  Raphanus sativus cv GSK3-1
FY439507       --> CTTTGTCTCTCGATCGATATGTTGCATTGTTCGGAGTTTGGTCAGGTTTC  Raphanus sativus cv GSK3-1

               901    -    951
UN13723        --> ATTGTATCTTGTATCCAATTTGTATGAGTATCATTTAATGGAATCAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- ATTGTATCTTGTATCCAATTTGTATGAATATCATTTAATGGAATCAGTTC  Raphanus sativus var. oleiformis
FD528623       <-- ATTGTATCTTATATCCAATTTGTATGAGTATCATTTAATGGAATCAGTTC  Raphanus raphanistrum subsp. maritimus
FD961510       <-- ATTGTATCTTATATCCAATTTGTATGAGTATCATTTAATGGAATCAGTTC  Raphanus raphanistrum subsp. maritimus
EW719670       <-- ..................................................  Raphanus sativus var. oleiformis
FD547352       <-- ATTGTATCTTATATCCAATTTGTATGAGTATCATTTAATGGAATCAGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW717142       --> ..................................................  Raphanus sativus var. oleiformis
FD532050       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD551461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714565       --> ..................................................  Raphanus sativus var. oleiformis
FD965898       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY435876       --> ATTGTATCTT........................................  Raphanus sativus cv GSK3-1
FY431435       --> ..................................................  Raphanus sativus cv GSK3-1
FY437796       --> ..................................................  Raphanus sativus cv GSK3-1
FY432039       --> ATTGTATCTTGTATCCAATTTGTATGAATATCA.................  Raphanus sativus cv GSK3-1
FY439507       --> ATTGTATCTTGTATCCAATTTGTATGAATATCATT...............  Raphanus sativus cv GSK3-1

               951    -   1001
UN13723        --> GTTGTATCTAATGGAATCATTACGATATTTTTATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720782       <-- GTTGTATCT.............................
FD528623       <-- GTTGTATCTAATGGAATCATTACGATATTTTTATGGCT
FD961510       <-- GTTGTATCT.............................
EW719670       <-- ......................................
FD547352       <-- GTTGc.................................
EW717142       --> ......................................
FD532050       --> ......................................
FD551461       --> ......................................
EW714565       --> ......................................
FD965898       --> ......................................
FY435876       --> ......................................
FY431435       --> ......................................
FY437796       --> ......................................
FY432039       --> ......................................
FY439507       --> ......................................