Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13735

               1      -     51
UN13735        --> GCTCCTCTGACCAAAGTTCACAACTTAATCTTTGGACGAACTTGGGTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> GCTCCTCTGACCAAAGTTCACAACTTAATCTTTGGACGAACTTGGGTCGA
EY906639       --> ..................................................
FD542412       --> ..................................................
FD563051       --> ..................................................
FD939473       --> ..................................................

               51     -    101
UN13735        --> TTCTCCTGGGGAAATGATCATGACGAACCTGACCACTGGTGACAAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> TTCTCCTGGGGAAATGATCATGACGAACCTGACCACTGGTGACAAAGTGG
EY906639       --> ..................................................
FD542412       --> ..................................................
FD563051       --> ..................................................
FD939473       --> ..................................................

               101    -    151
UN13735        --> TGCTTTACTTTCAACCATGTGGTTGGTTTGGGTAAAAGTTTCCTTTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> TGCTTTACTTTCAACCATGTGGTTGGTTTGGGTAAAAGTTTCCTTTTAAT
EY906639       --> ..................................................
FD542412       --> ..................................................
FD563051       --> ..................................................
FD939473       --> ..................................................

               151    -    201
UN13735        --> GCAACCTCTGTCTTCTTCTTCTTTTTTCGTTTTGAGCATAAAGTACATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> GCAACCTCTGTCTTCTTCTTCTTTTTTCGTTTTGAGCATAAAGTACATGT
EY906639       --> ..................................................
FD542412       --> ..................................................
FD563051       --> ..................................................
FD939473       --> ..................................................

               201    -    251
UN13735        --> GCATGCATTCACGGTTTTTCAACAGATCTGGTCGTTATGAAGTGGACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> GCATGCATTCACGGTTTTTCAACAGATCTGGTCGTTATGAAGTGGACGGA
EY906639       --> ....gtcaaccatgtggttggttcggatTGGTCGTTATGAAGTGGACGGA
FD542412       --> .....................................gGAAGTGGACGGA
FD563051       --> ..................................................
FD939473       --> ..................................................

               251    -    301
UN13735        --> TATGTCTATAACGCCTCTGAAGAGCCCAAGATACTCATGACTGGTAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> TATGTCTATAACGCCTCTGAAGAGCCCAAGATACTCATGACTGGTAAATG
EY906639       --> TATGTCTATAACGCCTCTGAAGAGCCCAAGATACTCATGACTGGTAAATG
FD542412       --> TATGTCTATAACGCCTCTGAAGAGCCCAAGATACTCATGACTGGTAAATG
FD563051       --> ..................................................
FD939473       --> ..................................................

               301    -    351
UN13735        --> GAACGAGTCCATGAGTTATCAGCAGTGTGATGGTGAAGGTGAACCTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..................................................
EY902759       <-- ..................................................
EY917276       --> GAACGAGTCCATGAGTTATCAGCAGTGTGATGGTGAAGGTGAACCTCTCC
EY906639       --> GAACGAGTCCATGAGTTATCAGCAGTGTGATGGTGAAGGTGAACCTCTCC
FD542412       --> GAACGAGTCCATGAGTTATCAGCAGTGTGATGGTGAAGGTGAACCTCTCC
FD563051       --> ..................................................
FD939473       --> ..................................................

               351    -    401
UN13735        --> CAGGCACCGAACTAAAGGAGGTCTGGAAACTCGCTGATGTTCCAAAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ..........................AAACTCGCTGATGTTCCAAAGGAT
EY902759       <-- ..................................................
EY917276       --> CTGGCACCGAACTAAAGGAGGTCTGGAAACTCGCTGATGTTCCAAAGGAT
EY906639       --> CAGGCACCGAACTAAAGGAGGTCTGGAAACTCGCTGATGTTCCAAAGGAT
FD542412       --> CAGGCACCGAGCTAAAGGAGGTCTGGAAACTCGCTGATGTCCCAAAGGAT
FD563051       --> ..................................................
FD939473       --> ..................................................

               401    -    451
UN13735        --> GACAAATACCAATACACACACTTTGCTCACAAGATCAATAGCTTTGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- GACAAATACCAATACACACACTTTGCTCACAAGATCAATAGCTTTGACAC
EY902759       <-- ..................................................
EY917276       --> GACAAATACCAATACACACACTTTGCTCACAAGATCAATAGCTTTGACAC
EY906639       --> GACAAGTACCAATACACACACTTTGCTCACAAGATCAATAGCTTTGACAC
FD542412       --> GACAAATACCAATACACACACTTTGCTCACAAGATCAATAGCTTTGACAC
FD563051       --> ..................................................
FD939473       --> ..................................................

               451    -    501
UN13735        --> TGCCCCCAAAAAGCTGTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- TGCCCCCAAAAACCTCTTGCCCTTTGATTCACGGTTACGCCCTGATAGAT
EY902759       <-- ...........................TTCACGGTTACGCCCTGATAGAT
EY917276       --> TGCCCCCAAAAAGCTGTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT
EY906639       --> TGCCCCCAAAAAGCTGTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT
FD542412       --> TGCCCCCAAAAAGCTGTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT
FD563051       --> ...........gcctcTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT
FD939473       --> ...........gcctcTTGCCCTCTGATTCACGGTTACGCCCTGATAGAT

               501    -    551
UN13735        --> ACGCACTAGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ACGCACTAGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC
EY902759       <-- ACGCACTAGAGATTGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC
EY917276       --> ACGCACTAGAGATGGGCGACATGTCCAAATC...................
EY906639       --> ACGCACTAGAGATTGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC
FD542412       --> ACGCACTAGAGATGGGCGACATGTCCAAATCCGGCAATGAGAAGAGCAGC
FD563051       --> ACGCACTAGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC
FD939473       --> ACGCACTAGAGATGGGCGACATGTCCAAATCAGGCAATGAGAAGAGCAGC

               551    -    601
UN13735        --> TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGAGCA
EY902759       <-- TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGGGCA
EY917276       --> ..................................................
EY906639       --> TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGGGCA
FD542412       --> TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGAGCA
FD563051       --> TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGAGCA
FD939473       --> TTGGAAGAGAGACAGAGAGCAGAGAAGAGAACACGTCAAGAGAAGGAGCA

               601    -    651
UN13735        --> AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
EY902759       <-- AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
EY917276       --> ..................................................
EY906639       --> AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
FD542412       --> AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
FD563051       --> AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC
FD939473       --> AAGCTTTACTCCCAAGTGGTTTGATATAACAGAGGAAGTCACTCCTACAC

               651    -    701
UN13735        --> CGTGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- CGTGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus sativus cv Rat-Tail Radish #3870
EY902759       <-- CATGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917276       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906639       --> CATGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542412       --> CATGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563051       --> CGTGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus sativus var. oleiformis
FD939473       --> CGTGGGGGGATCTTGAAGTTTACCAGTTCAATGGAAAGTACTTAGAACAC  Raphanus sativus var. oleiformis

               701    -    751
UN13735        --> CGGGAAGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- CGGGAAGCAGCTGATAAGTTTGAAGATAACACCGACCCTAAGTCGATCCC
EY902759       <-- CGGGAGGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAGTCCC
EY917276       --> ..................................................
EY906639       --> CGGGAGGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAGTCCC
FD542412       --> CGGGAAGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAATCCC
FD563051       --> CGGGAAGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAATCCC
FD939473       --> CGGGAAGCAGCTGATAAGTCTGAAGATAACACCGACCCTAAGTCAATCCC

               751    -    801
UN13735        --> ATTCAACCCATGGCAGTTCCAAGACATGTCTACTTGAAATGAATT-GCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- ATTCAACCCATGGCAGTTCCAAGACATGTTTACTTGAAATGAATG-GCTC  Raphanus sativus cv Rat-Tail Radish #3870
EY902759       <-- ATTCAACCCATGGCAGTTCCAAGACATGTCTACTTGAAATGAATT-GCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917276       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906639       --> ATTCAACCCATGGCAGTTCCAAGACATGTCTACTTGAAATGAATT-GCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542412       --> ATTCAACCCATGGCAATTCCAAGACATGTCTACTTGAAATGAATTTGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563051       --> ATTCAACCCATGGCAGTTCCAAGACATGTCTACTTGAAATGAATG-GCTC  Raphanus sativus var. oleiformis
FD939473       --> ATTCAACCCATGGCAGTTCCAAGACATGTCTACTTGAAATGAATG-GCTC  Raphanus sativus var. oleiformis

               801    -    851
UN13735        --> CAGAAGACAAAAA-GTGATCAAATCTTTTTGGTAACATTTGTTGTAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- CAGAAGACAAAAA-GTGATCAAATCTTTT-GGTAACATTTGTTGTAATTT  Raphanus sativus cv Rat-Tail Radish #3870
EY902759       <-- CGGAAGACAAAAAAGTGATCAAATCTTTTTGGTAACATTTGTTGTAATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917276       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY906639       --> CGGAAGACAAAAA-GTGATCAAATCTTTTTGGTAACATTTGTTGTAATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542412       --> CAGAAGACAAAAAAGTGATCAAATCTTTTTGGTAACATTTGTTGTAATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563051       --> CAGAAGACAAAAA-GTGATCAAATCTTTT-GGTAACATTTGTTGTAATTC  Raphanus sativus var. oleiformis
FD939473       --> CAGAAGACAAAAA-GTGATCAAATCTTTT-GGTAACATTTGTTGTAATTC  Raphanus sativus var. oleiformis

               851    -    901
UN13735        --> TTATTCTCTCGTAGTTTCAACAAACTATGCTAGCTTTCTCAAGTTTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- TTATTCTTTCGTAGTTTCAACAAACTATGCTAGCTTTTTCAAGTTTTAGT
EY902759       <-- TTATTCTCTCGTAGTTTCAACAAACTATGCTAGCTTTCTCAAGTTATAGT
EY917276       --> ..................................................
EY906639       --> TTATTCTCTCGTAGTTTCAACAAACTATG.....................
FD542412       --> TTATTCTCTCGTAGTTTCAACAAACTATTCTAGCTTTCTCAAGTTATAGT
FD563051       --> TTATTCTCTCGTAGTTTCAACAAACTATGCTAGCTTTCTCAAGTTTTAGT
FD939473       --> TTATTCTCTCGTAGTTTCAACAAACTATGCTAGCTTTCTCAAGTTTTAGT

               901    -    951
UN13735        --> TTACAACATTTGTTTTTTTCTTTTCTATTTATTCAAATCACTTTTTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD582431       <-- TTACAACATTTGTTTTTTT-TTTT-TATTTATTCAAATCACTTTTTCATC
EY902759       <-- TTACAACATTTGTTTTTTTCTTTTCTATTTATTCAAATCACTCTTTCATC
EY917276       --> ..................................................
EY906639       --> ..................................................
FD542412       --> TTACAACATTTGTTTTTTTCTTTTCTATTTATT.................
FD563051       --> TTACAACATTTGTTTTctttttct..........................
FD939473       --> TTACAACATTTGTTTTctttttct..........................

               951    -   1001
UN13735        --> CATAATTATATTCTTATTC
                   ~~~~~~~~~~~~~~~~~~~
FD582431       <-- CAg................
EY902759       <-- CATAATTATATTCTTATTC
EY917276       --> ...................
EY906639       --> ...................
FD542412       --> ...................
FD563051       --> ...................
FD939473       --> ...................