1      -     51
UN13744        --> AAAGCAAACATTCATATATAAAACTATAAAA-GCAATATATAAA-TGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- cAAGCAAACATTCATATATAAAACTATAAAAAGCAATATATAAAATGGCT
EV538139       <-- ...GCAAACATTCATATATAAAACTATAAAA-GCAATATATAAA-TGGCT
FD561426       <-- .........................ATAAAA-GCAATATATAAA-TGGCT
FY430221       <-- ..................................................
FY428838       <-- ..................................................
EY930156       <-- ..................................................
EV542219       --> AAAGCAAACATTCATATATAAAACTATAAAA-GCAATATATAAA-TGGCT
EV547413       --> .AAGCAAACATTCATATATAAAACTATAAAA-GCAATATATAAA-TGGCT
FD565594       --> .........................ATAAAA-GCAATATATAAA-TGGCT
FY436513       --> .............................AA-GCA-TATATAAA-TGGCT
FY436092       --> .................................gcATATATAAA-TGGCT
EY926418       --> ..................................................
EX776119       --> ..................................................

               51     -    101
UN13744        --> AAAGAGTCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- AAAGAGTCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
EV538139       <-- AAAGAGTCAAACTCATAATCGAAACTGAAATGATCCTTCTCATGTCCGCA
FD561426       <-- AAAGAGCCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
FY430221       <-- ................AATTGAAATTGAAATGATCCTTCTCATGTCCGCA
FY428838       <-- ..................................................
EY930156       <-- ..................................................
EV542219       --> AAAGAGTCAAACTCATAATCGAAACTGAAATGATCCTTCTCATGTCCGCA
EV547413       --> AAAGAGTCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
FD565594       --> AAAGAGCCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
FY436513       --> AAAGAGTCAAACTCGTAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
FY436092       --> AAAGAGTCAAACTCGTAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
EY926418       --> ...gcGTCAAACTCATAATTGAAATTGAAATGATCCTTCTCATGTCCGCA
EX776119       --> ....................GAAATTGAAATGATACTTCTCATGTCCGCA

               101    -    151
UN13744        --> ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- ACATAAATAAAACATTCCACCAAAGACAAAACAGTACCCTTAACGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- ACATAAATAAAACATTCCACCAAAGACGAAACAGTTCCCTTAACGATTAA  Raphanus sativus var. oleiformis
FY430221       <-- ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus sativus cv GSK3-1
FY428838       <-- ..................................................  Raphanus sativus cv GSK3-1
EY930156       <-- ..................................................  Raphanus sativus var. oleiformis
EV542219       --> ACATAAATAAAACATTCCACCAAAAACAAAACAGTACCCTTAACGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> ACATAAATAAAACATTCCACCAAAGACGAAACAGTTCCCTTAACGATTAA  Raphanus sativus var. oleiformis
FY436513       --> ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus sativus cv GSK3-1
FY436092       --> ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus sativus cv GSK3-1
EY926418       --> ACATAAATAAAACATTCCACCAAAGACAAAACAGTTCCCTTAACGATTAA  Raphanus sativus var. oleiformis
EX776119       --> ACATAAATAAAACATTCGACCAAAGACAAAACAGTACTCTTAACGATTAA  Raphanus raphanistrum subsp. landra

               151    -    201
UN13744        --> AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- AACTAAAAAGATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
EV538139       <-- AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
FD561426       <-- AACTAAAA-GATCAAAAACCTTTTTACTTAATCAACGTTCTGCATAACAT
FY430221       <-- AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
FY428838       <-- ..................................................
EY930156       <-- ..................................................
EV542219       --> AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
EV547413       --> AACTAAAAAGATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
FD565594       --> AACTAAAA-GATCAAAAACCTTTTTACTTAATCAACGTTCTGCATAACAT
FY436513       --> AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
FY436092       --> AACTAAAA-GATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT
EY926418       --> AACTAAAA-GATCAAAAACCTTTTTGCTTAATCAACGTTCTGCATAACAT
EX776119       --> AACTAAAA-AATTAAAAACCTTTTTGTTTAATCAACGTTCTGCATAACAT

               201    -    251
UN13744        --> CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- CCTCAGCAGTGAACTTGGTCCCCTTGTCCTTATCCGCCGCCGCACGACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- CCTCAGCGGTGAACTTGGTCCCCTTGTCCTTATCCGCGGCGGCACGTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus var. oleiformis
FY430221       <-- CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus cv GSK3-1
FY428838       <-- ....AGCGGTAAACTTG-TCCCCTTG-CCTTATCCGCCGCGGCACGTCCC  Raphanus sativus cv GSK3-1
EY930156       <-- ..................................................  Raphanus sativus var. oleiformis
EV542219       --> CCTCAGCGGTGAACTTGGTCCCCTTGTCCTTATCCGCGGCGGCACGTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> CCTCAGCAGTGAACTTGGTCCCCTTGTCCTTATCCGCCGCCGCACGACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus var. oleiformis
FY436513       --> CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus cv GSK3-1
FY436092       --> CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus cv GSK3-1
EY926418       --> CCTCAGCGGTAAACTTGGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus sativus var. oleiformis
EX776119       --> CCTCAGCGGTAAACTTTGTCCCCTTGTCCTTATCCGCCGCGGCACGTCCC  Raphanus raphanistrum subsp. landra

               251    -    301
UN13744        --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus sativus var. oleiformis
FY430221       <-- TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTAAGCTT  Raphanus sativus cv GSK3-1
FY428838       <-- TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTAAGCTT  Raphanus sativus cv GSK3-1
EY930156       <-- ..................................................  Raphanus sativus var. oleiformis
EV542219       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus sativus var. oleiformis
FY436513       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTAAGCTT  Raphanus sativus cv GSK3-1
FY436092       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTAAGCTT  Raphanus sativus cv GSK3-1
EY926418       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACCTCAGCTT  Raphanus sativus var. oleiformis
EX776119       --> TTGGCCTTCCTCTCCAAAAGCGACTTCCTGTCCTTGTCCAACC.......  Raphanus raphanistrum subsp. landra

               301    -    351
UN13744        --> CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACCGTCGTCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- CGTTATCACAACCTTCGACGGCTGAACACCTACGTTCACAGTGGTCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACCGTCGTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- CGTTATCACCACCTTCGACGGCTGAACGCCGACGTTCACCGTGGTCCCGT  Raphanus sativus var. oleiformis
FY430221       <-- CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACGGTCGTCCCGT  Raphanus sativus cv GSK3-1
FY428838       <-- CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACGGTCGTCCCGT  Raphanus sativus cv GSK3-1
EY930156       <-- ..................................................  Raphanus sativus var. oleiformis
EV542219       --> CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACCGTCGTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> CGTTATCACAACCTTCGACGGCTGAACACCTACGTTCACAGTGGTCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> CGTTATCACCACCTTCGACGGCTGAACGCCGACGTTCACCGTGGTCCCGT  Raphanus sativus var. oleiformis
FY436513       --> CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACGGTCGTCCCGT  Raphanus sativus cv GSK3-1
FY436092       --> CGTTATCACAACCTTCGACGGCTGAACGCCGACGTTCACGGTCGTCCCGT  Raphanus sativus cv GSK3-1
EY926418       --> CGTTATCACCACCTTCGACGGCTGAACGCCGACGTTCACCGTGGTCCCGT  Raphanus sativus var. oleiformis
EX776119       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN13744        --> TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATCACCCACTTGCGACGG
EV538139       <-- TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
FD561426       <-- TCACCTTCTCCCTCGTGATCCTTTCGATGTGGATGACCCACTTGCGACGG
FY430221       <-- TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
FY428838       <-- TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
EY930156       <-- ..................................................
EV542219       --> TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
EV547413       --> TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATCACCCACTTGCGACGG
FD565594       --> TCACCTTCTCCCTCGTGATCCTTTCGATGTGGATGACCCACTTGCGACGG
FY436513       --> TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
FY436092       --> TCACCTTCTCCCTCGTGATCCTCTCGATGTGGATGACCCACTTGCGACGG
EY926418       --> TCACCTTCTCCCTCGTGATCCTTTCGATGTGGATGACCCACTTGCGACGG
EX776119       --> ..................................................

               401    -    451
UN13744        --> TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- TACACCTGGACGACCTTTCCCTCGCGCCCCTTGTAGGTCCCGCGGACGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus var. oleiformis
FY430221       <-- TACACCTGGACGACCTTTCCTTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus cv GSK3-1
FY428838       <-- TACACCTGGACGACCTTTCCTTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus cv GSK3-1
EY930156       <-- ................................GTAGGTCCCGCGGACGAT  Raphanus sativus var. oleiformis
EV542219       --> TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> TACACCTGGACGACCTTTCCCTCGCGCCCCTTGTAGGTCCCGCGGACGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus var. oleiformis
FY436513       --> TACACCTGGACGACCTTTCCTTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus cv GSK3-1
FY436092       --> TACACCTGGACGACCTTTCCTTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus cv GSK3-1
EY926418       --> TACACCTGGACGACCTTTCCCTCGCGGCCCTTGTAGGTCCCGCGGACGAT  Raphanus sativus var. oleiformis
EX776119       --> ..................................................  Raphanus raphanistrum subsp. landra

               451    -    501
UN13744        --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EV538139       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FD561426       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FY430221       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FY428838       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EY930156       <-- CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EV542219       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EV547413       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FD565594       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FY436513       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
FY436092       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EY926418       --> CTGGACCTCGTCGTCCTTGCGGATGGGCATGGATCTGACGTTGTACTTGG
EX776119       --> ..................................................

               501    -    551
UN13744        --> CGCGTAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- CGCGTAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- CGCGGAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- CGCGAAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus var. oleiformis
FY430221       <-- CGCGTAGGTCGGTGGAGAGTGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus cv GSK3-1
FY428838       <-- CGCGTAGGTCGGTGGAGAGTGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus cv GSK3-1
EY930156       <-- CGCGAAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus var. oleiformis
EV542219       --> CGCGGAGGTCGGTGGAGAGAGGCGAGCTCATGATGA..............  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> CGCGTAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> CGCGAAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus var. oleiformis
FY436513       --> CGCGTAGGTCGGTGGAGAGTGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus cv GSK3-1
FY436092       --> CGCGTAGGTCGGTGGAGAGTGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus cv GSK3-1
EY926418       --> CGCGAAGGTCGGTGGAGAGAGGCGAGCTCATGATGACGCGTCTCTCGCTC  Raphanus sativus var. oleiformis
EX776119       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN13744        --> GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- GACGAGGCTGTGAAGTGAGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
EV538139       <-- GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
FD561426       <-- GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGGC
FY430221       <-- GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
FY428838       <-- GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
EY930156       <-- GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
EV542219       --> ..................................................
EV547413       --> GACGAGGCTGTGAAGTGAGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
FD565594       --> GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGGC
FY436513       --> GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
FY436092       --> GACGAGGCTGTGAAGTGGGCCTTGCGGTTCTTCCTGCGGGAGGAGGTGAC
EY926418       --> GA................................................
EX776119       --> ..................................................

               601    -    651
UN13744        --> TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGTGGAAAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGGGGAAA-TGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538139       <-- TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGGGGAAA-TGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD561426       <-- TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGTGGAAAATGG  Raphanus sativus var. oleiformis
FY430221       <-- TCTTGGGTT-TACTTCAT-TTCGCCGCCG.....................  Raphanus sativus cv GSK3-1
FY428838       <-- TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTT-GGTGGAAAtg..  Raphanus sativus cv GSK3-1
EY930156       <-- TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGTGGAAAATGG  Raphanus sativus var. oleiformis
EV542219       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547413       --> TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGGGGAAA-TGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565594       --> TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTTTGGTGGAAAATGG  Raphanus sativus var. oleiformis
FY436513       --> TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTT.............  Raphanus sativus cv GSK3-1
FY436092       --> TCTTGGGTTGTACTTCATCTTCGCCGCCGGGTCTTTT.............  Raphanus sativus cv GSK3-1
EY926418       --> ..................................................  Raphanus sativus var. oleiformis
EX776119       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN13744        --> AGGTCTCTTTTAGGGTTTCTCTC-CCGAAGGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV552506       <-- AGGTCTCTTCTAGGGTTTCTCTCtac.........
EV538139       <-- AGGTCTCTTcta.......................
FD561426       <-- AGGTCTCTTTTAGGGTTTCTCTC-CC.........
FY430221       <-- ...................................
FY428838       <-- ...................................
EY930156       <-- AGGTCTCTTTTAGGGTTTCTCTCAACGAAGGAGCC
EV542219       --> ...................................
EV547413       --> AGGTCTCTTCTAGGGTTTCTCTCtac.........
FD565594       --> AGGTCTCTTTTAGGGTTTCTCTC-CC.........
FY436513       --> ...................................
FY436092       --> ...................................
EY926418       --> ...................................
EX776119       --> ...................................