1      -     51
UN13769        --> GGAGCTCACAGTATCTCTCTCTCATCTTCAACCACGGGTTCCTGGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> GGAGCTCACAGTATCTCTCTCTCATCTTCAACCACGGGTTCCTGGAAAAC
FD979830       --> ..........ggATCTCTCTCTCATCTTCAACCACGGGTTCCTGGAAAAC
FD532852       --> ...........................ggAACCACGGGTTCCTGGAAAAC
FD982330       --> ...........................ggAACCACGGGTTCCTGGAAAAC
FD556317       --> ...........................................GGAAAAC
FD556958       --> .........................................ggGGAAAAC
FD987012       --> .................................................g
EV526919       --> ..................................................

               51     -    101
UN13769        --> AGAGGAAAAAAAA-GAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> AGAGGAAAAAAAAAGAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD979830       --> AGAGGAAAAAAAA-GAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD532852       --> AGAGGAAAAAAAA-GAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD982330       --> AGAGGAAAAAAAA-GAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD556317       --> AGAGGAAAAAAAAAGAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD556958       --> AGAGGAAAAAAAA-GAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
FD987012       --> gGAGGAAAAAAAAAGAATCTCCTTTCTCCTCCCAGGGAAAATGGGTAGCA
EV526919       --> ...................................GGAAAATGGGTAGCA

               101    -    151
UN13769        --> AGATGCTGTTCAGTTTAACAAGCCTTCGACTCTTCTCCGCCGTTTCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD989640       --> AGATGCTGTTCAGTTTAACAAGCCCTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. landra
FD979830       --> AGATGCTGTTCAGTTTAACAAGCCTTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> AGATGCTGTTCAGTTTAACAAGCCTTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. maritimus
FD982330       --> AGATGCTGTTCAGTTTAACAAGCCTTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> AGATGCTGTTCAGTTTAACAAGCCCTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. landra
FD556958       --> AGATGCTGTTCAGTTTAACAAGCCCTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. landra
FD987012       --> AGATGCTGTTCAGTTTAACAAGCCCTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. landra
EV526919       --> AGATGCTGTTCAGTTTAACAAGCCTTCGACTCTTCTCCGCCGTTTCTCGC  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN13769        --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
FD979830       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCTATGCTCTCAGCT
FD532852       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
FD982330       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
FD556317       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
FD556958       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
FD987012       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT
EV526919       --> AAACCCACCACCACTCCTTGTTTCTCGTCGAGGACTCAATGCTCTCAGCT

               201    -    251
UN13769        --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD979830       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD532852       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD982330       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD556317       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD556958       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
FD987012       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT
EV526919       --> CACCCCTGGCCCTGGAAGATCGGTTCCCTTGAGAAAAAGATTCTTCCTGT

               251    -    301
UN13769        --> TGCCTGCAAAAGCTACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD989640       --> TGCCTGCAAAAGCTACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. landra
FD979830       --> TGCCTGCAAAATCCACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> TGCCTGCAAAAGCCACCACAGAGCAATCAG------TGGGAGGAGAAGAC  Raphanus raphanistrum subsp. maritimus
FD982330       --> TGCCTGCAAAAGCCACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> TGCCTGCAAAAGCTACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. landra
FD556958       --> TGCCTGCAAAAGCTACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGGC  Raphanus raphanistrum subsp. landra
FD987012       --> TGCCTGCAAAAGCTACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. landra
EV526919       --> TGCCTGCAAAAGCCACCACAGAGCAATCAGGTCAAGTGGGAGGAGAAGAC  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN13769        --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
FD979830       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
FD532852       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
FD982330       --> GTGGATAGCAACATCATGCCCTACTGTAGCATCAACAAGGCTGAGAAGAA
FD556317       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
FD556958       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
FD987012       --> GTGGATAGCAACATCATGCCTTACTGTAGCATCAACAAGGCTGAGAAGAA
EV526919       --> GTGGATAGCAACATCATGCCTTACTGTGGCATCAACAAGGCTGAGAAGAA

               351    -    401
UN13769        --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCTATGCAATCGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD989640       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCTATGCAATCGTTCT  Raphanus raphanistrum subsp. landra
FD979830       --> ATCCATTGGTGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCT  Raphanus raphanistrum subsp. maritimus
FD982330       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCTATGCAATCGTTCT  Raphanus raphanistrum subsp. landra
FD556958       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCTATGCAATCGTTCT  Raphanus raphanistrum subsp. landra
FD987012       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCTATGCAATCGTTCT  Raphanus raphanistrum subsp. landra
EV526919       --> ATCAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCCATGCAATCGTTCT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN13769        --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> ATTACGATGGCAAAGCGATCATTTCGAATGAGGAGTTTGATAACCTTAAA
FD979830       --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
FD532852       --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
FD982330       --> ATTACAATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
FD556317       --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
FD556958       --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA
FD987012       --> ATTACGATGGCAAAGCTATCATGTCGAATGAGGAGTTTGATAACCTTAAA
EV526919       --> ATTACGATGGCAAAGCGATCATGTCGAATGAGGAGTTTGATAACCTTAAA

               451    -    501
UN13769        --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
FD979830       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
FD532852       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
FD982330       --> -AAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
FD556317       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGA
FD556958       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTTTCATGCTAAGTTCTGATGA
FD987012       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGTTAAGTTCTGATTA
EV526919       --> GAAGAGCTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTCCTGATGA

               501    -    551
UN13769        --> ACAGAGGTTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD989640       --> ACAGAGATTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. landra
FD979830       --> ACAGAGGTTCTTGGAAGCTTCGATGGCTTATGTT................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> ACAGAGGTTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. maritimus
FD982330       --> ACAGAGGTTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> ACAGAGATTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. landra
FD556958       --> ACAGAGATTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. landra
FD987012       --> ACAGAGATTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. landra
EV526919       --> ACAGAGGTTCTTGGAAGCTTCGATGGCTTATGTTTCTGGAAATCCAATCC  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN13769        --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ..................................................
FD989640       --> TCAATGATGAAGAATTTGGTAATCTCAAACTCAAACTAAAGACGGATGGT
FD979830       --> ..................................................
FD532852       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
FD982330       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
FD556317       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
FD556958       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
FD987012       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT
EV526919       --> TCAATGATGAAGAATTTGATAATCTCAAACTCAAACTAAAGATGGATGGT

               601    -    651
UN13769        --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGCAAAAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ........................................GCAAAAAGGT  Raphanus raphanistrum subsp. landra
FD989640       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGCA.......  Raphanus raphanistrum subsp. landra
FD979830       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGT  Raphanus raphanistrum subsp. maritimus
FD982330       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGCAAAAAGGT  Raphanus raphanistrum subsp. landra
FD556958       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGCAAAAAGGT  Raphanus raphanistrum subsp. landra
FD987012       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGCAAAAAG-T  Raphanus raphanistrum subsp. landra
EV526919       --> AGCGAGATTGTGTGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13769        --> GTATAGTGATCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- GTATAGTGATCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. landra
FD989640       --> ..................................................  Raphanus raphanistrum subsp. landra
FD979830       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532852       --> GTATAGTGACCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. maritimus
FD982330       --> GTATAGTGACCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556317       --> GTATAGTGATCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. landra
FD556958       --> GTATAGTGATCTCGCTGTAGATTACTTCAAAATGCTCTT...........  Raphanus raphanistrum subsp. landra
FD987012       --> GTATAGTGATCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. landra
EV526919       --> GTATAGTGACCTCGCTGTAGATTACTTCAAAATGCTCTTGCTCAATGTTC  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN13769        --> CAGCATCCGTTGTTGCTCTTGGACTGTTTTTCTTCTTGGACGACATTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- CAGCATCCGTTGTTGCTCTTGGACTGTTTTTCTTCTTGGACGACATTACA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> CAGCATCCGTTGTTGCTCTTGGACTGTTTTTCTT................
FD982330       --> CAGCATCCGTTGTTGCTCTTGGACTGTTTT-CTTCTTGGACGACATTACA
FD556317       --> CAGCATCCGTTGTTGCTCTTGGACTGTTTTTCTTCTTGGACGACATTACA
FD556958       --> ..................................................
FD987012       --> CAGCATCCGTTGTTGCTCTTG.............................
EV526919       --> CAGCATCCGTTGTTGCTCTTGGACTGTTTTTCTTCTTGGACGACATTACA

               751    -    801
UN13769        --> GGTTTTGAGATCACATACATCTTGGAGCTTCCAGAGCCATTTAGTTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- GGTTTTGAGATCACATACATCTTGGAGCTTCCAGAGCCATTTAGTTTCAT
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> GGTTTTGAGATCACATACATCTTG..........................
FD556317       --> GGTTTTGAGATCACATACATCTTGGAGCTTCCAGAGCCATTTAGTTTCAT
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> GGTTTTGAGATCACATACATCTTGGAACTTTCATAGCCATTTAGTTTCAT

               801    -    851
UN13769        --> ATTCACTTGGTTCGCTGCCGTGCCTTTGATCGTATAC-TGGCTTCAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ATCCACTTGGTTCGCTGCCGTGCCTTTGATCGTATACCTGGCTTCAACAA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ATTCACTTGGTTCGCTGC................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ATTCACTTGGTTCGCTGCCGTGCCTTTGATCGTATAC-TGGCTcacatca

               851    -    901
UN13769        --> TCACCAAACTCATCATCAAAGACTTCCTGATCTTGAAGGGTCCTTGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- TCACCAAACTCATCATCAAAGACTTCCTGATCTTGAAGGGTCCTTGTCCA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> caaatgatcatc......................................

               901    -    951
UN13769        --> AATTGTGGAACAGAGAATGTTTCCTTCTTTGGAACAATTCTTTCAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- AATTGTGGAACAGAGAATGTTTCCTTCTTTGGAACAATTCTTTCAATCTC
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               951    -   1001
UN13769        --> CAGCGGTGGCAAAACCAACAATGTCAAATGCACCAACTGTGGAACCGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- CAGCGGTGGCAAAACCAACAATGTCAAATGCACCAACTGTGGAACCGCGA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1001   -   1051
UN13769        --> TGGAGTATGACTCTGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- TGGAGTATGACTCTGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCTAA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1051   -   1101
UN13769        --> GCTTGAAACCTGTGAGATAAAGATGGAAAAAGAAAGAATGGGTTTTGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- GCTTGAAACCTGTGAGATAAAGATGGAAAAAGAAAGAATGGGTTTTGTCA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1101   -   1151
UN13769        --> GAAGCAAAAATGGATTTGATGCCTGTATATTTAAGATCTTCCATGTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- GAAGCAAAAATGGATTTGATGCCTGTATATTTAAGATCTTCCATGTTAGC
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1151   -   1201
UN13769        --> TCTCTATCTCCTTTCACATGATTTCTGATTTGTACATTTTATTTTCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- TCTCTATCTCCTTTCACATGATTTCTGATTTGTACATTTTATTTTCTACC
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1201   -   1251
UN13769        --> CTGTCCTCAGAGAAGAAGGTTTACAAGCTTTTCTTCCATATGCTCAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- CTGTCCTCAGAGAAGAAGGTTTACAAGCTTTTCTTCCATATGCTCAACAA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1251   -   1301
UN13769        --> CGCACACAAATTTAGGAGTAGCGTATAGTGTGTGGTTGTAAGAGATTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- CGCACACAAATTTAGGAGTAGCGTATAGTGTGTGGTTGTAAGAGATTCAA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1301   -   1351
UN13769        --> ATGGTATGTAATACAAAGAGATTGATTGATTATGGAGCTAAAGTCAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983142       <-- ATGGTATGTAATACAAAGAGATTGATTGATTATGGAGCTAAAGTCAATAA
FD989640       --> ..................................................
FD979830       --> ..................................................
FD532852       --> ..................................................
FD982330       --> ..................................................
FD556317       --> ..................................................
FD556958       --> ..................................................
FD987012       --> ..................................................
EV526919       --> ..................................................

               1351   -   1401
UN13769        --> CACATAATTAGATGACAGGC
                   ~~~~~~~~~~~~~~~~~~~~
FD983142       <-- CACATAATTAGATGACAGGC
FD989640       --> ....................
FD979830       --> ....................
FD532852       --> ....................
FD982330       --> ....................
FD556317       --> ....................
FD556958       --> ....................
FD987012       --> ....................
EV526919       --> ....................