1      -     51
UN13775        --> TTATTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TTATTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
EV524628       <-- ..acTCAAGGAAACTTATTATATGTGAAAATAAAAGACAGAAGATAGGTC
EX748065       <-- ..acTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
EY898902       <-- ..gcTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
FD938135       <-- ..gcTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
FD556863       <-- .....CAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
EY921777       <-- ................................AAAGACAGAAGATAGGTC
EY900700       <-- .................................agGACAGAAGATAGGTC
EV528327       <-- ...................................ggCAGAAGATAGGTC
FD543791       <-- ......................................gcAAGATAGGTC
FD963788       <-- ..................................................
EY894824       --> ..gcTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
FD934592       --> ..gcTCAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
EY921015       --> .....CAAGGAAACTTATTATATATGAAAATAAAAGACAGAAGATAGGTC
EY917857       --> ...............................AAAAGACAGAAAATAGGTC
EY896178       --> .................................agGACAGAAGATAGGTC
EV532354       --> ...................................ggCAGAAGATAGGTC
FD539549       --> ......................................gcAAGATAGGTC
EX752114       --> ..................................................

               51     -    101
UN13775        --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAAAAAAGCCAGAACAAACA
EV524628       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EX748065       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EY898902       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
FD938135       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
FD556863       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EY921777       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EY900700       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EV528327       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
FD543791       <-- TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAAGAAACA
FD963788       <-- .................................CAAAGCCAGAACAAACA
EY894824       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
FD934592       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EY921015       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAAAAAAGCCAGAACAAACA
EY917857       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EY896178       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
EV532354       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAACAAACA
FD539549       --> TTCATAGATTACCACGAAAGAAGGCAGAAGTAACAAAGCCAGAAGAAACA
EX752114       --> ..................................................

               101    -    151
UN13775        --> TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TGTTTTGAGTTTCATAACCGAAGGAA-AAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. landra
EV524628       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
EX748065       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
EY898902       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
FD938135       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus sativus var. oleiformis
FD556863       <-- TGTTTTGAGTTTAATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. landra
EY921777       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. landra
EY900700       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
EV528327       <-- TGTTTTGAGTTTCATAACCGAAGGAGCAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
FD543791       <-- TGTTTTGAGTTTCATAACCGAAGGAA-AAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963788       <-- TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
EY894824       --> TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
FD934592       --> TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus sativus var. oleiformis
EY921015       --> TGTTTTGAGTTTCATAACCGAAGGAA-AAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. landra
EY917857       --> TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. landra
EY896178       --> TGTTTTGAGTTTCATAACCGAAGGAACAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
EV532354       --> TGTTTTGAGTTTCATAACCGAAGGAGCAAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. maritimus
FD539549       --> TGTTTTGAGTTTCATAACCGAAGGAA-AAAAAAAGGTAACAAAACAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX752114       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN13775        --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EV524628       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EX748065       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY898902       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD938135       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD556863       <-- CACACGGTAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY921777       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY900700       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EV528327       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD543791       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD963788       <-- CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY894824       --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD934592       --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY921015       --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EY917857       --> CACACGATAGAATCATTCGTAAATCCAAAAATGAAGGCTGCTCTGCCAGT
EY896178       --> CACACGATAGAATCATTCGTAAATCCAAGAATGAAGGCTGCTCTGCCAGT
EV532354       --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
FD539549       --> CACACGATAGAATCATTCGTAGATCCAAGAATGAAGGCTGCTCTGCCAGT
EX752114       --> ..................................................

               201    -    251
UN13775        --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EV524628       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTc.........
EX748065       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY898902       <-- TCACAGGTCCGTCAGGGAACCGCAACGCAGCTTCCTTGTTAGCACTCTCC
FD938135       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
FD556863       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY921777       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY900700       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EV528327       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
FD543791       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
FD963788       <-- TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY894824       --> TCACAGGTCCGTCAGGGAACCGCAACGCAGCTTCCTTGTTAGCACTCTCC
FD934592       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY921015       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY917857       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EY896178       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EV532354       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
FD539549       --> TCACAGGTCCGTCAGGGAACCACAACGCAGCTTCCTTGTTAGCACTCTCC
EX752114       --> .................................................C

               251    -    301
UN13775        --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- ACCGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EV524628       <-- ..................................................
EX748065       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EY898902       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
FD938135       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGc.............
FD556863       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EY921777       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EY900700       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EV528327       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGTCAATGTCGATAGCATAATC
FD543791       <-- ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCAATAGCATAATC
FD963788       <-- ACGGAGTCACTCCCATGGATCACGT-ACTGCCAATGTCGATAGCATAATC
EY894824       --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
FD934592       --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGc.............
EY921015       --> ACCGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EY917857       --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EY896178       --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC
EV532354       --> ACGGAGTCACTCCCATGGATCACGTTCCTGTCAATGTCGATAGCATAATC
FD539549       --> ACGGAGTCACTCCCATGGATCACGTTCCTGCCAATGTCAATAGCATAATC
EX752114       --> ACGGAGTCCCTCCCATGGATCACGTTCCTGCCAATGTCGATAGCATAATC

               301    -    351
UN13775        --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EV524628       <-- ..................................................
EX748065       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY898902       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
FD938135       <-- ..................................................
FD556863       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY921777       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY900700       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EV528327       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
FD543791       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
FD963788       <-- CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY894824       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
FD934592       --> ..................................................
EY921015       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY917857       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EY896178       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EV532354       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
FD539549       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCGCTCCAATGA
EX752114       --> CCCACGGATGGTTCCTGGTTCGGAAGCAGCGGGGTTGGTCCCTCCAATGA

               351    -    401
UN13775        --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TCTTCCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. landra
EV524628       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX748065       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
EY898902       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
FD938135       <-- ..................................................  Raphanus sativus var. oleiformis
FD556863       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. landra
EY921777       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCTTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. landra
EY900700       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
EV528327       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
FD543791       <-- TCTTCCTTCCCGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963788       <-- TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
EY894824       --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
FD934592       --> ..................................................  Raphanus sativus var. oleiformis
EY921015       --> TCTTCCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. landra
EY917857       --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCTTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. landra
EY896178       --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
EV532354       --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. maritimus
FD539549       --> TCTTCCTTCCCGTCAAGACAACATTCTTCCCCTCCCAGATCATAGCAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX752114       --> TCTTTCTTCCTGTCAAGACAACATTCTTCCCCTCCCAaa...........  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN13775        --> ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- ACGGGTCCGGATATGATGTAATCAACAAGGCCGTTGAAGAAAGGCTTGGC
EV524628       <-- ..................................................
EX748065       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EY898902       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
FD938135       <-- ..................................................
FD556863       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EY921777       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EY900700       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EV528327       <-- ACTGGTCCGGGGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
FD543791       <-- ACTGGTCCAGAGATAATGTAGTCGACAAGACCGTTGAAGAATGGCTTGGC
FD963788       <-- ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EY894824       --> ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
FD934592       --> ..................................................
EY921015       --> ACGGGTCCGGATATGATGTAATCAACAAGGCCGTTGAAGAAAGGCTTGGC
EY917857       --> ACTGGTCCGGAAATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EY896178       --> ACTGGTCCGGAGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
EV532354       --> ACTGGTCCGGGGATGATGTAATCAACAAGGCCGTTGAAGAATGGCTTGGC
FD539549       --> ACTGGTCCAGAGATAATGTAGTCGACAAGACCGTTGAAGAATGGCTTGGC
EX752114       --> ..................................................

               451    -    501
UN13775        --> AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCAACAGTGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCAAAAGGACGGTCCACAGTGATCA
EV524628       <-- ..................................................
EX748065       <-- AGACAAGTCTTGGTAGTGTTCCTCAGCGAAAGGACGGTCAACAGTGATCA
EY898902       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCGAAGGGACGGTCAACAGTGATCA
FD938135       <-- ..................................................
FD556863       <-- AGACAAGTCTTGGTAGTGTTTCTCAACGAAAGGACGGTCAACAGTGATCA
EY921777       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCAACAGTGATCA
EY900700       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCCACAGTGATCA
EV528327       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCCACAGTGATCA
FD543791       <-- AGACAAGTCTTGGTAGTGTTTCTCGGCGAAAGGACGGTCAACAGTGATCA
FD963788       <-- AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCAACAGTGATCA
EY894824       --> AGACAAGTCTTGGTAGTGTTTCTCAGCGAAGGGACGGTCAACAGTGATCA
FD934592       --> ..................................................
EY921015       --> AGACAAGTCTTGGTAGTGTTTCTCAGCAAAAGGACGGTCCACAGTGATCA
EY917857       --> AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCAACAGTGATCA
EY896178       --> AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCCACAGTGATCA
EV532354       --> AGACAAGTCTTGGTAGTGTTTCTCAGCGAAAGGACGGTCCACAGTGATCA
FD539549       --> AGACAAGTCTTGGTAGTGTTTCTCGGCGAAAGGACGGTCAACAGTGATCA
EX752114       --> ..................................................

               501    -    551
UN13775        --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EV524628       <-- ..................................................
EX748065       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY898902       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
FD938135       <-- ..................................................
FD556863       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY921777       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY900700       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EV528327       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
FD543791       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
FD963788       <-- TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY894824       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
FD934592       --> ..................................................
EY921015       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY917857       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EY896178       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EV532354       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
FD539549       --> TCTTTAGACCTTTCAAAGTGAAACCCTTCTTTTCGAATCTGCAGATGATT
EX752114       --> ..................................................

               551    -    601
UN13775        --> TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TCACCAATCAGACCCCTCTGAACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. landra
EV524628       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX748065       <-- TCACCAATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
EY898902       <-- TCACCAATAAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
FD938135       <-- ..................................................  Raphanus sativus var. oleiformis
FD556863       <-- TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. landra
EY921777       <-- TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. landra
EY900700       <-- TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
EV528327       <-- TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
FD543791       <-- TCACCGATCAGACCCCTCTGGACGCCGTCAGGCTTAATCATGATGAAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963788       <-- TCACCAATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
EY894824       --> TCACCAATAAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
FD934592       --> ..................................................  Raphanus sativus var. oleiformis
EY921015       --> TCACCAATCAGACCCCTCTGAACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. landra
EY917857       --> TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. landra
EY896178       --> TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
EV532354       --> TCACCGATCAGGCCCCTCTGGACGCCGTCGGGCTTGATCATGATGAAAGT  Raphanus raphanistrum subsp. maritimus
FD539549       --> TCACCGATCAGACCCCTCTGGACGCCGTCAGGCTTAATCATGATGAAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX752114       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN13775        --> TTGCTCCATTGTAAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY925562       <-- TTGCTCCATTGTAAAAGCTTTGTTTACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. landra
EV524628       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX748065       <-- TTGCTCCATTGTAAGATCTTTGTT-AACAGTTCACTCGTCGGCGAGACCT  Raphanus raphanistrum subsp. maritimus
EY898902       <-- TTGCTCCATTGTAAGATCTTTGTT-AACAGTTCACTCGTCGGCGAgcc..  Raphanus raphanistrum subsp. maritimus
FD938135       <-- ..................................................  Raphanus sativus var. oleiformis
FD556863       <-- TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATcc..  Raphanus raphanistrum subsp. landra
EY921777       <-- TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. landra
EY900700       <-- TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. maritimus
EV528327       <-- TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. maritimus
FD543791       <-- TTGCTCCATTGTAAGATCTTTGGT-AACAGTTCACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD963788       <-- TTGCTCCATTGTAAGATCTTTGTT-AACAGTTCACTCGTCGGCGAGACCT  Raphanus raphanistrum subsp. maritimus
EY894824       --> TTGCTCCATTGTAAGATCTTTG............................  Raphanus raphanistrum subsp. maritimus
FD934592       --> ..................................................  Raphanus sativus var. oleiformis
EY921015       --> TTGCTCCATTGTAAAAGCTTTGTTTACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. landra
EY917857       --> TTGCTCCATTGTGAGATCTTTGTT..........................  Raphanus raphanistrum subsp. landra
EY896178       --> TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. maritimus
EV532354       --> TTGCTCCATTGTGAGATCTTTGTT-ACCAGTTAACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. maritimus
FD539549       --> TTGCTCCATTGTAAGATCTTTGGT-AACAGTTCACTCGTCGGCGATACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX752114       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN13775        --> CC......
                   ~~~~~~~~
EY925562       <-- CC......
EV524628       <-- ........
EX748065       <-- CC......
EY898902       <-- ........
FD938135       <-- ........
FD556863       <-- ........
EY921777       <-- CC......
EY900700       <-- agacgccc
EV528327       <-- CC......
FD543791       <-- CC......
FD963788       <-- CC......
EY894824       --> ........
FD934592       --> ........
EY921015       --> CC......
EY917857       --> ........
EY896178       --> agacgccc
EV532354       --> CC......
FD539549       --> CC......
EX752114       --> ........