RadishBase

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Alignment for radish unigene UN13802

               1      -     51
UN13802        --> GGCTCTTCAAATTCGTCTTATGGTAAGAAATCTTGTCCATACTTTTTT-C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> GGCTCTTCAAATTCGTCTTATGGTAAGAAATCTTGTCCATACTTTTTT-C
EV542707       --> ....................cGGTAAGAAATCTTGTCCATACTTTTTTTC
EX775949       --> .....................GGTAAGAAATCTTGTCCATACTTTTTT-C
EY942587       --> ..................................................
EX893299       --> ..................................................

               51     -    101
UN13802        --> AGCTCAAGGACTTGCCTAGTTTGCATCAAAGCACACAGAAATGGGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ........................ATCAAAGCACGCAGAAATGGGATGAA
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> AGCTCAAGGACTTGCCTAGTTTGCATCAAAGCACACAGAAATGGGATGAA
EV542707       --> AGCACAAGGACTTGCCTAGTTTGCATCAAAGCACACAGAAATGGGATGAA
EX775949       --> AGCTCAAGGACTTGCCTAGTTTGCATCAAAGCACACAGAAATGGGATGAA
EY942587       --> ......................GCATCAAAGCACACAGAAATGGGATGAA
EX893299       --> ..................................................

               101    -    151
UN13802        --> GCAAAAAGAAGACATGGTCTGTTTACACACAAATACATGACTACATGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- GCAAGAAGAAGACATGGTCTGTTGACTCACAAATACATGACTACACGTAT
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> GCAAAAAGAAGACATGGTCTGTTTACACACAAATACATGACTACATGTAT
EV542707       --> GCAAAAAGAAGACATGGTCTGTTTACACACAAATACATGACTACATGTAT
EX775949       --> GCAAAAAGAAGACATGGTCTGTTGACTCACAAATACATGACTACACGTAT
EY942587       --> GCAAAAAGAAGACATGGTCTGTTTACACACAAATACATGACTACATGTAT
EX893299       --> ..................................................

               151    -    201
UN13802        --> ACATTCTCGATAGATTTATTGGCAATAGCCTTCAACAGATTTTTATTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ACATTCTCAATAGATTTATTGGCAACAGCCTTCAACAGATTTTTATTCAT
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> ACATTCTCGATAGATTTATTGGAAATAGCCTTCAACAGATTTTTATTCAT
EV542707       --> ACATTATGGATAGATTTATTGGCAATAGCCTTCAACAGATTTTTATTCAT
EX775949       --> ACATTCTCAATAGATTTATTGGCAACAGCCTTCAACAGATTTTTATTCAT
EY942587       --> ACATTCTCGATAGATTTATTGGAAATAGCCTTCAACAGATTTTTATTCAT
EX893299       --> ..................................................

               201    -    251
UN13802        --> AAAACGGTTCTTGTCCATTAAAAGGTATATATATGTTTTAAGTGTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- AAAACGGTTCTTGTCCATTAAAAGGTATATATATGTTTTAAGTGTTCTTC
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> AAAACGGTTCTTGTCCATTAAAAGGTATATATATATTTTAAGTGTTCTTC
EV542707       --> AAAACGGTTCTTGTCCATTAAAAGGTATATATATGTTTTAAGTGTTCTTC
EX775949       --> AAAACGGTTCTTGTCCATTAAAAGGTATATATATGTTTTAAGTGTTCTTC
EY942587       --> AAAACGGTTCTTGTCCATTAAAAGGTATATATATATTTTAAGTGTTCTTC
EX893299       --> ..................................................

               251    -    301
UN13802        --> CTCGCAGAGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- CTCGCAGGGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> CTCGCAGAGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
EV542707       --> CTCGCAGAGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
EX775949       --> CTCGCAGAGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
EY942587       --> CTCGCAGAGTAGGCACAGTAAGCCGCCACTCCAGCAAACGCAGCAGCCGT
EX893299       --> ...........................................CAGCCGT

               301    -    351
UN13802        --> CACTGAAGCAATAACGGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- CACTGAAGCAATAACAGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
FY431147       <-- ..............................................ACCA
FY429324       <-- ...............................................CCA
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> CACTGAAGCAATAACGGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
EV542707       --> CACTGAAGCAATAACGGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
EX775949       --> CACTGAAGCAATAACAGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
EY942587       --> CACTGAAGCAATAACGGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCA
EX893299       --> CACTGAAGCAATAACGGCTGAGTTGTTACTATCCTTCAGTTTTGTAACCC

               351    -    401
UN13802        --> CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
FY431147       <-- CACAATTTGATTCAAATCTCTTTCTATGACGCTCTATATCTGCAGCCGAA
FY429324       <-- CACAATTTGATTCAAATCTCTTTCTATGACGCTCTATATCTGCAGCCGAA
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
EV542707       --> CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
EX775949       --> CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
EY942587       --> CACAGTTTGATTCAAATCTCTTTCTATGACGTTCTATATCTGCAGCCGAA
EX893299       --> CACAGTTTGATTCAAATCCCTTTCTATGACGTTCTATATCTGCAGCCGAA

               401    -    451
UN13802        --> AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
FY431147       <-- AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
FY429324       <-- AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
FD562976       <-- ...........aATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
EX771873       <-- ...................GAGCTTTGTAGAAAATATC-TTAACATCATC
EX889607       <-- .......................TTTGTAGAAAATATCCTTAACATCATC
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
EV542707       --> AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
EX775949       --> AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
EY942587       --> AGTTTGCCAACGATCATATGAGCTTTGTAGAAAATATCCTTAACATCATC
EX893299       --> AGTTTGCCAACGATCATATGAGCTTTGTAAAAAATATCCTTAACATCATC

               451    -    501
UN13802        --> ATCATCACCCCAAGCATCTTCAAACTGACTGATCAAATCTTCAGTTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ATCATCACCCCAAGCATCTTCAAACTGACTGATCAAATCTTCAGTTACAA  Raphanus raphanistrum subsp. landra
FY431147       <-- ATCATCACCCCAAGCATCTTCAAACTGACTGATCAAATCTTCGGTTACAA  Raphanus sativus cv GSK3-1
FY429324       <-- ATCATCACCCCAAGCATCTTCAAACTGACTGATCAAATCTTCGGTTACAA  Raphanus sativus cv GSK3-1
FD562976       <-- ATCATCACCCCAAGCATCT-CAAACTGATTGATCAAATCTTCAGTTACAA  Raphanus sativus var. oleiformis
EX771873       <-- ATCATCACCCCAAGCATCT-CAAACTGACTGAT-AAATCT-CAGTTACAA  Raphanus raphanistrum subsp. landra
EX889607       <-- ATCATCACCCCAAGCATCT-CAAACTGATTGATCAAATCT-CAGTTACAA  Raphanus sativus var. oleiformis
FD954962       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946510       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV538772       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD951099       --> ATCATCACCCCAAGCATCTTCAAACTGATTGATCAAATCTTCGGTAACAA  Raphanus sativus cv Rat-Tail Radish #3870
EV542707       --> ATCATCACCCCAAGCATCTTCAAACTGACTGATCAAATCTTCAGTTACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775949       --> ATCATCACCCCAAGCATCTTCAAACTGACTGATAAAATCTTCAGTTACAA  Raphanus raphanistrum subsp. landra
EY942587       --> ATCATCACCCCAAGCATCTTCAAACTGATTGATCAAATCTTCGGTAACAA  Raphanus sativus cv Rat-Tail Radish #3870
EX893299       --> ATCATCACCCCAAGCATCTTCAAACTGATTGATCAAATCTTCAGTTACAA  Raphanus sativus var. oleiformis

               501    -    551
UN13802        --> GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
FY431147       <-- GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
FY429324       <-- GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
FD562976       <-- GCTCAACTCCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
EX771873       <-- GCTCAACACC-CTTTCTTTG-CTTTCATAGCAGGCTGCCAAGATCTCAAG
EX889607       <-- GCACAACTCCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
EV542707       --> GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
EX775949       --> GCTCAACACCCCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
EY942587       --> GCTCAACACCTCTTTCTTTGGCTTTCATAGCAGGCTGCCAAGATCTCAAG
EX893299       --> GCACAACTCCTCTTTCTTTGGCTTT.........................

               551    -    601
UN13802        --> AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
FY431147       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
FY429324       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
FD562976       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
EX771873       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGGGGAATGTCAAGCTGTAT
EX889607       <-- AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
FD954962       <-- ......ATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
EY946510       <-- ..................................................
EV538772       <-- ..................................................
FD951099       --> AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
EV542707       --> AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
EX775949       --> AACCCTATAAACCCTTTAAGCGAAAGCTTATGGGGAATGTCAAGCTGTAT
EY942587       --> AACCCTATAAACCCTTTAAGCGAAAGCTTATGAGGAATGTCAAGCTGTAT
EX893299       --> ..................................................

               601    -    651
UN13802        --> AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAACGGAAACGGTATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAGACGGAAACGGTATTG  Raphanus raphanistrum subsp. landra
FY431147       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAAAGGAAACGGTATCG  Raphanus sativus cv GSK3-1
FY429324       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAAAGGAAACGGTATCG  Raphanus sativus cv GSK3-1
FD562976       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAACGGAAACGGTATCG  Raphanus sativus var. oleiformis
EX771873       <-- AGGCTTCCCTTCTGATCCCATCCCTATGC-TTCAAACGGAAACGGTATCG  Raphanus raphanistrum subsp. landra
EX889607       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAACGGAAACGGTATCG  Raphanus sativus var. oleiformis
FD954962       <-- AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAAAGGAAACGGTATCG  Raphanus sativus cv Rat-Tail Radish #3870
EY946510       <-- .............GATCCCATCCCTATGC-TTCAAAAGGAAACGGTATCG  Raphanus sativus cv Rat-Tail Radish #3870
EV538772       <-- ...........................gctTTCAAACGGAAACGGTATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD951099       --> AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAAAGGAAACGGTATCG  Raphanus sativus cv Rat-Tail Radish #3870
EV542707       --> AGGCTTCCCTTCTGATCCCATCCCTATGCTTTCAAACGGAAACGGTATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775949       --> AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAACGGAAACGGTATCG  Raphanus raphanistrum subsp. landra
EY942587       --> AGGCTTCCCTTCTGATCCCATCCCTATGCCTTCAAAAGGAAACGGTATCG  Raphanus sativus cv Rat-Tail Radish #3870
EX893299       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN13802        --> TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- TTTTGTAGCCGTCAAAAGCAAGATTCATAACGGGAGTTCTATACGGAAAC
FY431147       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
FY429324       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
FD562976       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EX771873       <-- TTTTGTAGCCGTCAAAAGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EX889607       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
FD954962       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EY946510       <-- TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EV538772       <-- TTT-GTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
FD951099       --> TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EV542707       --> TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EX775949       --> TTTTGTAGCCGTCAAAAGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EY942587       --> TTTTGTAGCCGTCAAACGCAAGATTCATAACGGGAGTTCTATACGGAAAC
EX893299       --> ..................................................

               701    -    751
UN13802        --> GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- GTGGAGTCAACAAGACGTTTCATGATGTCATCGACTTCAGGGG-AGATGA
FY431147       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
FY429324       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
FD562976       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
EX771873       <-- GTGGAGTCAACAAGACGTTTCATGATGTCATCGACTTCAGGGG-AGATGA
EX889607       <-- GTGGAGTCGACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
FD954962       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
EY946510       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
EV538772       <-- GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
FD951099       --> GTGGAGTCAACAAGACGTTTCATGATGGCATCGACT..............
EV542707       --> GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGG-AGATGA
EX775949       --> GTGGAGTCAACAAGACGTTTCATGATGTCATCGACTTCAGGGG-AGATGA
EY942587       --> GTGGAGTCAACAAGACGTTTCATGATGGCATCGACTTCAGGGGGAGATGA
EX893299       --> ..................................................

               751    -    801
UN13802        --> TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus raphanistrum subsp. landra
FY431147       <-- TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus sativus cv GSK3-1
FY429324       <-- TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus sativus cv GSK3-1
FD562976       <-- TTAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGT  Raphanus sativus var. oleiformis
EX771873       <-- TCAGGTCGTTGTAGACCCGAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus raphanistrum subsp. landra
EX889607       <-- TTAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGT  Raphanus sativus var. oleiformis
FD954962       <-- TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY946510       <-- TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EV538772       <-- TTAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD951099       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV542707       --> TTAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775949       --> TCAG-TCGTTGTAGACCCGAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus raphanistrum subsp. landra
EY942587       --> TCAGGTCGTTGTAGACCCAAACAGCGATTAAACCTCCTTCTTTGCGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EX893299       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN13802        --> ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
FY431147       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
FY429324       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
FD562976       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
EX771873       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
EX889607       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
FD954962       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
EY946510       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
EV538772       <-- ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTGAACGGC
FD951099       --> ..................................................
EV542707       --> ACACGTTTGGCTATGTTGTAGA-TGGTATGAGATCGAAGTAGTGAACGGC
EX775949       --> -CACGTTTGGCTATGTTGTAGA-TGGTATGAGATCGAAGTAGTG......
EY942587       --> ACACGTTTGGCTATGTTGTAGAATGGTATGAGATCGAAGTAGTG......
EX893299       --> ..................................................

               851    -    901
UN13802        --> TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- TTGTGCc...........................................
FY431147       <-- TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
FY429324       <-- TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
FD562976       <-- TTGTGCTGCGATGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
EX771873       <-- TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
EX889607       <-- TTGTGCAGCGATGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
FD954962       <-- TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
EY946510       <-- TTGTGCAGCGACGATGAGGTCAACGGAGTTATCTCCGCCGACTAGAGCGA
EV538772       <-- TTGTGCAGCGACGACGAGGTCAACAGAGTTATCTCCGCCGACTAGAGCGA
FD951099       --> ..................................................
EV542707       --> TTGTGCAGCGACGACGAG................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               901    -    951
UN13802        --> CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
FY429324       <-- CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
FD562976       <-- CC-TTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
EX771873       <-- CCATTTTGTCTTCAGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
EX889607       <-- CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
FD954962       <-- CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
EY946510       <-- CCATTTTGTCTTCGGACAACTCTGTTGGAGTGTGATGGTAGCTGATTCGC
EV538772       <-- CCATTTTGTCTTCGGACATCTCTGTTGGAGTGTGATGGTAGCTGATCCGC
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               951    -   1001
UN13802        --> TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
FY429324       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
FD562976       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
EX771873       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
EX889607       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
FD954962       <-- TCGTGTCTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
EY946510       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
EV538772       <-- TCGTGTTTCACCGCTCGTTTCAGTTGTGCTTCGTTTATGTCTGTAGCCAC
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1001   -   1051
UN13802        --> AACTTTCTCGAAGTACTCTGCGAGACCAATGGCGGCTTGACCATTTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY431147       <-- AACTTTCTCGAAGTACTCTGCCAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus sativus cv GSK3-1
FY429324       <-- AACTTTCTCGAAGTACTCTGCCAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus sativus cv GSK3-1
FD562976       <-- AACTTTCTCGAAGTACTCTGCGAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus sativus var. oleiformis
EX771873       <-- AACTTTCTCGGAGTACTCTGCGAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus raphanistrum subsp. landra
EX889607       <-- AACTTTCTCGAAGTACTCTGCGAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus sativus var. oleiformis
FD954962       <-- AACTTTCTCGAAGTACTCTGCGAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus sativus cv Rat-Tail Radish #3870
EY946510       <-- AACTTTCTCGAAGTACTCTGCGAGACCAATGGCGGCTCGACCATTTCCAG  Raphanus sativus cv Rat-Tail Radish #3870
EV538772       <-- AACTTTCTCGAAGTACTCTGCCAGACCAATGGCGGCTTGACCATTTCCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD951099       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV542707       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775949       --> ..................................................  Raphanus raphanistrum subsp. landra
EY942587       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX893299       --> ..................................................  Raphanus sativus var. oleiformis

               1051   -   1101
UN13802        --> TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
FY429324       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
FD562976       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
EX771873       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
EX889607       <-- TACCGACATCCCAAGCCAATTTGTGTTGACTGGTTCGAGCAGCAAGCTTC
FD954962       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
EY946510       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
EV538772       <-- TACCGACATCCCAAGCCAATTTGTGTTGACCGGTTCGAGCAGCAAGCTTC
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1101   -   1151
UN13802        --> GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
FY429324       <-- GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
FD562976       <-- GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
EX771873       <-- GTGAACCAGTCGA-CGGGTACCTTGGTCTTGCGTTCTGGTAAGCATCCGC
EX889607       <-- GTGAACCAGTCGATCGGGTACCTTGGCCCTGCGTTCTGGTAAGCATCCGC
FD954962       <-- GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
EY946510       <-- GTGAACCAGTCGATCGGGTACCTCGGCCTTGCGTTCTGGTAAGCATCCGC
EV538772       <-- GTGAACCAGTCGATCGGGTACCTTGGCCTTGCGTTCTGGTAAGCATCCGC
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1151   -   1201
UN13802        --> TAGTTTATCAGACAAAGCAGCCATTCTTTTT-TTCTTCTTGATCTCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- TAGTT-ATCAGACAAAGCAGCCATctt.......................
FY429324       <-- TAGTTTATCAGACAAAGCAGCCA...........................
FD562976       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTT-T-CTTCTTGATCTATTTG
EX771873       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTT-TTCTTCTTGATCTCTCTG
EX889607       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTT-T-CTTCTTGATCTCTTTG
FD954962       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTTCTTCTTCTTGATCTCTCTG
EY946510       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTTCTTCTTCTTGATCTCTCTG
EV538772       <-- TAGTTTATCAGACAAAGCAGCCATTCTTTTT-TTCTTCTTGATCTCTCTG
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1201   -   1251
UN13802        --> TATGTTTCTTGTTTTTGTTCTTGTCTTGGCTTATTACACTGATCTTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- TGTGTTTCGTGTTCTTGTTCTTGTCTTGGCTTcc................
EX771873       <-- TATGTTTCTGGTTTTTGTTCTTGTCTTGGCTTcc................
EX889607       <-- TGTGTTTCGTGTTCTTGTTCTTGTCTTcc.....................
FD954962       <-- TATGTTTCTTGTTTTTGTTCTTGTCTTGGCTTcc................
EY946510       <-- TATGTTTCTTGTTTTTGTTCTTGTCTTGGCTTcc................
EV538772       <-- TATGTTTCTTGTTTTTGTTCTTGTCTTGGCTTATTACACTGATCTTTATA
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1251   -   1301
UN13802        --> CTGAAGAATGATGGAATGGAACAAGTCAAAGTTGAAAAAGTCAGATCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- CTGAAGAATGATGGAATGGAACAAGTCAAAGTTGAAAAAGTCAGATCTGG
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1301   -   1351
UN13802        --> CGACGAGTCTTCCTACTTCTTAACCCAAGAGTTGGTCTTTCTTCCATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- CGACGAGTCTTCCTACTTCTTAACCCAAGAGTTGGTCTTTCTTCCATTTT
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1351   -   1401
UN13802        --> CCAAATTATTTGAATTTCTTCTCTTTTTTTTTAATTCTCGTCTGTGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV566047       <-- ..................................................
FY431147       <-- ..................................................
FY429324       <-- ..................................................
FD562976       <-- ..................................................
EX771873       <-- ..................................................
EX889607       <-- ..................................................
FD954962       <-- ..................................................
EY946510       <-- ..................................................
EV538772       <-- CCAAATTATTTGAATTTCTTCTCTTTTTTTTTAATTCTCGTCTGTGTATT
FD951099       --> ..................................................
EV542707       --> ..................................................
EX775949       --> ..................................................
EY942587       --> ..................................................
EX893299       --> ..................................................

               1401   -   1451
UN13802        --> GTTCC
                   ~~~~~
EV566047       <-- .....
FY431147       <-- .....
FY429324       <-- .....
FD562976       <-- .....
EX771873       <-- .....
EX889607       <-- .....
FD954962       <-- .....
EY946510       <-- .....
EV538772       <-- GTTCC
FD951099       --> .....
EV542707       --> .....
EX775949       --> .....
EY942587       --> .....
EX893299       --> .....