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Alignment for radish unigene UN13834

               1      -     51
UN13834        --> CTAACTATACTAATTGCATTTTGATGTGCACTTGCTTGAATACATTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> CTAACTATACTAATTGCATTTTGATGTGCACTTGCTTGAATACATTAAGC
FD945346       --> ..........................................CATTAAAC
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               51     -    101
UN13834        --> TTAAACTTCTGAGCACATCACTGGCTCTACAACTGTTACAGGCAAGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> TTAAACTTCTGAGCACATCACTGGCTCTACAACTGTTACAGGCAAGTATA
FD945346       --> TTAAACTTCTGAGCACATCACTGGCTCTACAACTGTTACAGGCAAGTATA
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               101    -    151
UN13834        --> TATGTTTTAGCTAGTTTATATGTTATTAGAATATTAAATTTCATGGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> TATGTTTTAGCTAGTTTATGTCTTATTAGAATATTAAATTTCATGGATGA
FD945346       --> TATGTTTTAGCTAGTTTATGTCTTATTAGAATATTAAATTTCATGGATGA
EY894467       --> ........AGCCAGTTTATATATTATTAGAATATTAAATTTCATGGATGG
FD567622       --> .......aAGCCAGTTTATATGTTATTAAAATATTAAATTTCATGGATGA
FD936773       --> .......aAGCCAGTTTATATGTTATTAGAATATTAAATTTCATGGATGA
FD538685       --> ...........................cGAATATTAAATTTCATGGATGA
FD935529       --> .................................................A

               151    -    201
UN13834        --> ATAAGCACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> ATAAGCACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
FD945346       --> ATAAGCACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
EY894467       --> ATAAGAACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
FD567622       --> ATAAGCACAAACAATATTATAAGTAATCAAGATCTGGTAAAAAAAGAGTA
FD936773       --> ATAAGCACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
FD538685       --> ATAAACACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA
FD935529       --> ATAACCACAAACAATATTATAAGTAATCAAGATCTGGTAGAAAAAGAGTA

               201    -    251
UN13834        --> AAGAGTTGGACGAATATCTTCGCCTCTACTTTAGTAAGCAAATCAACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..........CGAATATCTTCGCCTATACTTTAGTAAGCAAATCAACTGG  Raphanus raphanistrum subsp. maritimus
FD542679       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- ..................................................  Raphanus sativus var. oleiformis
FY433775       <-- ..................................................  Raphanus sativus cv GSK3-1
FD564044       <-- ..................................................  Raphanus sativus var. oleiformis
FY434912       <-- ..................................................  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> AAGAGTTGGACGAATATCTTCGCCTATACTTTAGTAAGCAAATCAACTGG  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> AAGAGTTGGACGAATATCTTCGCCTATACTTTAGTAAGCAAATCAACTGG  Raphanus sativus cv Early Scarlet Globe
EY894467       --> AAGAGTTGGACGAATATCTTCGCCTCTACTTTAGTAAGCAAATCAACTGG  Raphanus raphanistrum subsp. maritimus
FD567622       --> AAGAGTTGGACGAATATCTTCCCCTCTACTTTAGTAAGCAAATTAACTGG  Raphanus sativus var. oleiformis
FD936773       --> AAGAGTTGGACGAATATCTTCGCCTCTACTTTAGTAAGCAAATTAACTGG  Raphanus sativus var. oleiformis
FD538685       --> AAGAGTTGGACGAATATCTTCCCCCCTACTTTAGTAAGCAAATCAACTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> AAGAGTTGGACGAATATCTTCGCCTCTACTTTAGTAAGCAAATTAACTGG  Raphanus sativus var. oleiformis

               251    -    301
UN13834        --> CAATCCAGTCAACCATAACATTCTTGATATAATGCTTCTTCAGCTTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- CAATCCAGTCAACCATAACACTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus raphanistrum subsp. maritimus
FD542679       <-- ...........................TATAATGCTTCTTCAGCTTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- ..................................................  Raphanus sativus var. oleiformis
FY433775       <-- ..................................................  Raphanus sativus cv GSK3-1
FD564044       <-- ..................................................  Raphanus sativus var. oleiformis
FY434912       <-- ..................................................  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> CAATCCAGTCAACCATAACACTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> CAATCCAGTCAACCATAACACTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus sativus cv Early Scarlet Globe
EY894467       --> CAATCCAGTCAACCATAACACTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus raphanistrum subsp. maritimus
FD567622       --> CAATCCAGTCAACCACAACATTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus sativus var. oleiformis
FD936773       --> CAATCCAGTCAACCACAACATTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus sativus var. oleiformis
FD538685       --> CGATCCAGTCAACCACAACATTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> CAATCCAGTCAACCACAACATTCTTGATATAATGCTTCTTCAGCTTTCTC  Raphanus sativus var. oleiformis

               301    -    351
UN13834        --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- CGTCTAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD542679       <-- CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
EW731184       <-- ...ctAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> CGTCTAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD945346       --> CGTCTAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
EY894467       --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD567622       --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD936773       --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD538685       --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT
FD935529       --> CGTCGAATGTTCTTTCCCCAGTACTGGTTGTATAACACAAACTCATCTGT

               351    -    401
UN13834        --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD542679       <-- TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
EW731184       <-- TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD945346       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
EY894467       --> TGCTACTTTCTTCCCATCGTCATTGCGGTTCCAGTGGTATATCGCATGTG
FD567622       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD936773       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD538685       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG
FD935529       --> TGCTACTTTCTTCCCATCATCATTGCGGTTCCAGTGGTATATCGCATGTG

               401    -    451
UN13834        --> TTCTGTTTTTTATGTCCAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- TTCGGTTTTTTATGTCCAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT  Raphanus raphanistrum subsp. maritimus
FD542679       <-- TTCTGTTTTTTATGTCCAGCGTGGAGTGGCCGTAACTAGCTTCTCTAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- TTCGGTTTTTTATGTCCAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- ..................................................  Raphanus sativus var. oleiformis
FY433775       <-- ..................................................  Raphanus sativus cv GSK3-1
FD564044       <-- ..................................................  Raphanus sativus var. oleiformis
FY434912       <-- ..................................................  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> TTCGGTTTTTTATGTCCAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> TTCGGTTTTTTATGTCCAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT  Raphanus sativus cv Early Scarlet Globe
EY894467       --> TTCGGTTTTTTATGTCAAGAGTGGAGTGCCCGTAGCTAGCTTCTCTAAAT  Raphanus raphanistrum subsp. maritimus
FD567622       --> TTCTGTTTTTTATGTCCAGAGTGGAGTGGCCGTAGCTAGCTTCTCTAAAT  Raphanus sativus var. oleiformis
FD936773       --> TTCTGTTTTTTATGTCCAGAGTGGAGTGGCCGTAGCTAGCTTCTCTAAAT  Raphanus sativus var. oleiformis
FD538685       --> TTCTGTTTTTTATGTCCAGCGTGGAGTGGCCGTAACTAGCTTCTCTAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> TTCTGTTTTTTATGTCCAGAGTGG..........................  Raphanus sativus var. oleiformis

               451    -    501
UN13834        --> GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- GCAGAGTAATCTGGCTGTGGTTCACTAAACCTTCCGGCAAGACCTTCTTG  Raphanus raphanistrum subsp. maritimus
FD542679       <-- GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCGGCAAGACCTTCTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- ...................................CGCAAGACTTTCTTG  Raphanus sativus var. oleiformis
FY433775       <-- ..................................................  Raphanus sativus cv GSK3-1
FD564044       <-- ..................................................  Raphanus sativus var. oleiformis
FY434912       <-- ..................................................  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> GCAAAGTAATCTGGCTGTGGTTCCCTAAACCTTCCGGCAAGACCTTCTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCGGCAAGACCTTCTTG  Raphanus sativus cv Early Scarlet Globe
EY894467       --> GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG  Raphanus raphanistrum subsp. maritimus
FD567622       --> GCAGAATAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG  Raphanus sativus var. oleiformis
FD936773       --> GCAGAATAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG  Raphanus sativus var. oleiformis
FD538685       --> GCAGAGTAATCTGGCTGTGGTTCCCTAAACCTTCCCGCAAGACCTTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN13834        --> ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus raphanistrum subsp. maritimus
FD542679       <-- ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- GTTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus var. oleiformis
FY433775       <-- .................CTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus cv GSK3-1
FD564044       <-- .................................AGCTGAGGTATCTG-AA  Raphanus sativus var. oleiformis
FY434912       <-- ..........................................ATCTGGAA  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus cv Early Scarlet Globe
EY894467       --> GTTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus raphanistrum subsp. maritimus
FD567622       --> GTTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus var. oleiformis
FD936773       --> GTTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus sativus var. oleiformis
FD538685       --> ATTTCCTCCGTCTCCAACTGTGATATAAACAGGAGCTGAGGTATCTGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> ..................................................  Raphanus sativus var. oleiformis

               551    -    601
UN13834        --> CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus raphanistrum subsp. maritimus
FD542679       <-- CCGGGAAACGATCTCCACTTGACACATTGTACCGCACATTTGATACTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATGCTCGG  Raphanus sativus var. oleiformis
FY433775       <-- CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus sativus cv GSK3-1
FD564044       <-- CCGGGAAACGATCTC-ACTTGACACATTATACCGCACATTTGATGCTCGG  Raphanus sativus var. oleiformis
FY434912       <-- CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus sativus cv Early Scarlet Globe
EY894467       --> CCGGGAAACGGTCTCCACTTGACACATTATACCGCACATTTGATACTCGG  Raphanus raphanistrum subsp. maritimus
FD567622       --> CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATGCTCGG  Raphanus sativus var. oleiformis
FD936773       --> CCGGGAAACGATCTCCACTTGACACATTATACCGCACATTTGATGCTCGG  Raphanus sativus var. oleiformis
FD538685       --> CCGGGAAACGATCTCCACTTGACACATTGTACCGCACATTTGATACTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN13834        --> TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- TACGATCTCTCGTAGGCATGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus raphanistrum subsp. maritimus
FD542679       <-- TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- TACGATCTCTCGTAGGCATGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus var. oleiformis
FY433775       <-- TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus cv GSK3-1
FD564044       <-- TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus var. oleiformis
FY434912       <-- TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus cv GSK3-1
FY454178       <-- ..................................................  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> TACGATCTCTCGTAGGCATGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> TACGATCTCTCGTAGGCATGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus cv Early Scarlet Globe
EY894467       --> TACGATCGCTCGTAGGCATGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus raphanistrum subsp. maritimus
FD567622       --> TACGATCTCTCGTAGGCGTGAACATGTCCAGC..................  Raphanus sativus var. oleiformis
FD936773       --> TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus sativus var. oleiformis
FD538685       --> TACGATCTCTCGTAGGCGTGAACATGTCCAGCAAAGATAACATCGACTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN13834        --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FD542679       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCTTCCT
EW731184       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FD941038       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGTTTTCACCCTCCT
FY433775       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FD564044       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGTTTTCACCCTCCT
FY434912       <-- GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FD945346       --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
EY894467       --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCCTCCT
FD567622       --> ..................................................
FD936773       --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGTTTTCACCCTCCT
FD538685       --> GTATTCGACAAACCAATCCTCAAAAGCTGCTCGCATGCTTTCACCTTCCT
FD935529       --> ..................................................

               701    -    751
UN13834        --> TGAAGTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- TGAAGTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus raphanistrum subsp. maritimus
FD542679       <-- TGAAGTGTGCTTCGTTACTGTTGTATATAGGAGCATGCATCAGAACAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731184       <-- TGAAGTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD941038       <-- TGAAATGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus var. oleiformis
FY433775       <-- TGAAATGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus cv GSK3-1
FD564044       <-- TGAAATGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus var. oleiformis
FY434912       <-- TGAAATGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus cv GSK3-1
FY454178       <-- ...aaTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus cv GSK3-1
FD939908       <-- ..................................................  Raphanus sativus var. oleiformis
FY438942       <-- ..................................................  Raphanus sativus cv GSK3-1
EW732661       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FY450881       <-- ..................................................  Raphanus sativus cv GSK3-1
EW737117       --> TGAAGTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCA--ATAATT  Raphanus sativus cv Rat-Tail Radish #3870
FD945346       --> TGAAGTGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus cv Early Scarlet Globe
EY894467       --> TGAAGTGTGCTTCATTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus raphanistrum subsp. maritimus
FD567622       --> ..................................................  Raphanus sativus var. oleiformis
FD936773       --> TGAAATGTGCTTCGTTACTGTTGTATATAGGGGCATGCATCAGAACAATT  Raphanus sativus var. oleiformis
FD538685       --> TGAAGTGTGCTTCGTTACTGTTGTATATAGGAGCATGCAT..........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935529       --> ..................................................  Raphanus sativus var. oleiformis

               751    -    801
UN13834        --> AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- AGCCATGGAGTTTTCTCCCc..............................
FD542679       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
EW731184       <-- AGCCATGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FD941038       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FY433775       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FD564044       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FY434912       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FY454178       <-- AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FD939908       <-- ..................................................
FY438942       <-- ..................................................
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> AGCCATGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FD945346       --> AGCCATGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> AGCCAAGGAGTTTTCTCCCTGTCAACTCTTTTGAACTCTTCATCAAGCCA
FD538685       --> ..................................................
FD935529       --> ..................................................

               801    -    851
UN13834        --> TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAAT...............
EW731184       <-- TCTCCACTGTGGTGTATACTTCACGAAAGGAGAATAACTGGAGAGGACAA
FD941038       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FY433775       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FD564044       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FY434912       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FY454178       <-- TCTCCACTGCGGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FD939908       <-- ..........GGTGTATACTTCACAAAAGGAGAATAACTGGAGAGGACAA
FY438942       <-- ......................ACAAAAGGAGAATAACTGGAGAGGACAA
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> TCTCCACTGTGGTGTATACTTCACGAAAGGAGAATAACTGGAGAGGACAA
FD945346       --> TCTCCACTGTGGTGTATACTTCACGAAAG-AGAATAACTGGAGAGGACAA
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> TC................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               851    -    901
UN13834        --> TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FD941038       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FY433775       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FD564044       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FY434912       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FY454178       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FD939908       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
FY438942       <-- TGATATGAGCGGAGGCACGCCTAACAGCATACCACAGAGGATCACTGCTT
EW732661       <-- ..................................................
FY450881       <-- ..................................................
EW737117       --> TGA...............................................
FD945346       --> TGATATGAGCGGAGGCACGCCTA-CAGCATACCACAGAGGATCACTGCTT
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               901    -    951
UN13834        --> TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCCTGAAAGG
FD941038       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FY433775       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FD564044       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FY434912       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FY454178       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FD939908       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FY438942       <-- TTTGAAGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
EW732661       <-- .....AGCCAAGTATGGGGTAGTGTAACGCTCAAGGTAATTCTTGAAAGG
FY450881       <-- ..................................................
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               951    -   1001
UN13834        --> TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- TGTCACTTCCCCC-ATGTGAGGCATGTAATCGATCTCGTGATTGCCAGCA
FD941038       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FY433775       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FD564044       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FY434912       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FY454178       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FD939908       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
FY438942       <-- TGTCACTTCCCCC-ATGTAAGGCATGTAATCGATCTCGTGATTGCCAGCA
EW732661       <-- TGTCACTTCCCCCCATGTGAGGCATGTAATCGATCTCGTGATTGCCAGCA
FY450881       <-- ..................................................
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1001   -   1051
UN13834        --> GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- GACCAGAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FD941038       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FY433775       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FD564044       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FY434912       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FY454178       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FD939908       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FY438942       <-- GACCAAAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
EW732661       <-- GACCAGAGCCAGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
FY450881       <-- ..........AGGGTTGATAAGCGGTACTTCGCTCCACAAAACGGCCCCA
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1051   -   1101
UN13834        --> AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- AGTATCCCATCTGATACCc...............................
FD941038       <-- AGTATCCCATCTGATACCAAGGTCGTTATACTGATATCTGTCAGCGTAAG
FY433775       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
FD564044       <-- AGTATCCCATCTGATACCAAGGTCGTTATACTGATATCTGTCAGCGTAAG
FY434912       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
FY454178       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
FD939908       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
FY438942       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
EW732661       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATACCTGTCAGCGTAAG
FY450881       <-- AGTATCCCATCTGATACCAACGTCGTTATACTGATATCTGTCAGCGTAAG
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1101   -   1151
UN13834        --> AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- AGAGATCTCCAAGc....................................
FY433775       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
FD564044       <-- AGAGATCTCCAAGc....................................
FY434912       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
FY454178       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
FD939908       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
FY438942       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
EW732661       <-- AGAGATCTCCAAGGAATAACACAGCTTGAGCTCCACTCCTCATGTAGTGT
FY450881       <-- AGAGATCTCCAAGGAATAAGACAGCTTGAGCTCCACTCCGCATGTAGTGT
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1151   -   1201
UN13834        --> TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
FD564044       <-- ..................................................
FY434912       <-- TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
FY454178       <-- TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
FD939908       <-- TCCc..............................................
FY438942       <-- TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
EW732661       <-- TTCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
FY450881       <-- TCCAGCGTGGACAAGGAGTTGAACGTTTGGCCCAGGTCGCCTATGATACC
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1201   -   1251
UN13834        --> AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
FD564044       <-- ..................................................
FY434912       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
FY454178       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
FD939908       <-- ..................................................
FY438942       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
EW732661       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
FY450881       <-- AAACTTGTAAGAAGCATCTGGATGTAAATGTGGTGGTGTCACAAACCAAA
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1251   -   1301
UN13834        --> ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
FD564044       <-- ..................................................
FY434912       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
FY454178       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
FD939908       <-- ..................................................
FY438942       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
EW732661       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
FY450881       <-- ACTCCCTAGAAGATTCACCACTTTCGATCTTGTAATAGTACTTTGTATCA
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1301   -   1351
UN13834        --> TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGACTTGTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGAC........
FD564044       <-- ..................................................
FY434912       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGAC........
FY454178       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGACTTGTACTT
FD939908       <-- ..................................................
FY438942       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGACTTGTACTT
EW732661       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGACTTGTACTT
FY450881       <-- TACTGGAGGCCAGAGACAAGGCAGTGATGGGTGTAGCCAGACTTGTACTT
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1351   -   1401
UN13834        --> GTAGAAAGTGTAGTTTGAGTGTGTGCCTTGAGCCACAAAGTCGTATTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- GTAGAAAGTGTAGTTTGAGTGTGTGCCTTGAGCCACAAAGTCGTATTTGC
FD939908       <-- ..................................................
FY438942       <-- GTAGAAAGTGTAGTTTGAGTGTGTGCCTTGAGCCACAAAGTCGTATTTGC
EW732661       <-- GTAGAAAGTGTAGTTTGAGTGTGTGCCTTGAGCCACAAAGTCGTATTTGC
FY450881       <-- GTAGAAAGTGTAGTTTGAGTGTGTGCCTTGAGCCACAAAGTCGTATTTGC
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1401   -   1451
UN13834        --> CCTGAACGGTGCCGTAATGGACAGTGCTGGAGCCAGGCTCATCAGGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- CCTGAACGGTGCCGTAATGGACAGTGCTGGAGCCAGGCTCATCAGGAGTC
FD939908       <-- ..................................................
FY438942       <-- CCTGAACGGTGCCGTAATGGACAGTGCTGGAGCCAGGCTCATCAGGAGTC
EW732661       <-- CCTGGACGGTGCCGTAATGGACAGTGCTGGAGCCAGGCTCGTCAGGAGTC
FY450881       <-- CCTGAACGGTGCCGTAATGGACAGTGCTGGAGCCAGGCTCATCAGGAGTC
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1451   -   1501
UN13834        --> ACCCAAGAGATGATAACTGCCTTTCCATCATAATCCCCTTGTGTTATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ACCCAAGAGATGATAACTGCCTTTCCATCATAATCCCCTTGTGTTATATG
FD939908       <-- ..................................................
FY438942       <-- ACCCAAGAGATGATAACTGCCTTTCCATCATAATCCCCTTGTGTTATATG
EW732661       <-- ACCCAAGAGATGATAACTGCCTTTCCATCATAATCCCCTTGTGTTATATG
FY450881       <-- ACCCAAGAGATGATAACTGCCTTTCCATCATAATCCCCTTGTGTTATATG
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1501   -   1551
UN13834        --> TACTTGTTGAGGAGCGTTGTAGCCTTTAGGGACTTTGAAAACTGGGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- TACTTGTTGAGGAGCGTTGTAGCCTTTAGGGACTTTGAAAACTGGGTGGT
FD939908       <-- ..................................................
FY438942       <-- TACTTGTTGAGGAGCGTTGTAGCCTTTAGGGACTTTGAAAACTGGGTGGT
EW732661       <-- TACTTGTTGAGGAGCGTTGTAGCCTTTAGGGACTTTGAAAACAGGGTGGT
FY450881       <-- TACTTGTTGAGGAGCGTTGTAGCCTTTAGGGACTTTGAAAACTGGGTGGT
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1551   -   1601
UN13834        --> CGAGTGGAATATCAACGGCGGGCCATTCGGAGCGGACGTAGCTACTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- CGAGTGGAAT-TCAACGGCGG.............................
FD939908       <-- ..................................................
FY438942       <-- CGAGTGGAATATCAACGGCGGGCCATTCGGAGCGGACGTAGCTACTTGTG
EW732661       <-- CGAGTGGAATATCAACGGCGGGCCATTCGGAGCGGACGTAGCTACTTGTG
FY450881       <-- CGAGTGGAATATCAACGGCGGGCCATTCGGAGCGGACGTAGCTACTTGTG
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1601   -   1651
UN13834        --> ATCCCTCCTTCTCCGTTTAAAACTAAGCTCAACAACACAGAGATTACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- ATCCCTCCTTCTCCGTTTAAAACTAAGCTCAACAACACAGAGATTACCAG
EW732661       <-- ATCCCTCCTTCTCCGTTTAAAACTAAGCTCAACAACACAGAGATTACCAG
FY450881       <-- ATCCCTCCTTCTCCGTTTAAAACTAAGCTCAACAACACAGAGATTACCAG
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1651   -   1701
UN13834        --> AAAATGATGAATCTCCATACTCGCTCTACCACAAAAGTTTGAAGGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD961850       <-- ..................................................
FD542679       <-- ..................................................
EW731184       <-- ..................................................
FD941038       <-- ..................................................
FY433775       <-- ..................................................
FD564044       <-- ..................................................
FY434912       <-- ..................................................
FY454178       <-- ..................................................
FD939908       <-- ..................................................
FY438942       <-- AAAATGATGAATCTCCA.................................
EW732661       <-- AAAATGACGAATCTCCATACTCGCTCTACCACAAAAGTTTGAAGGAGAGA
FY450881       <-- AAAATGATGAATCTCCATACTCGCTCTACCACAAAAGTT-GAAGGAG...
EW737117       --> ..................................................
FD945346       --> ..................................................
EY894467       --> ..................................................
FD567622       --> ..................................................
FD936773       --> ..................................................
FD538685       --> ..................................................
FD935529       --> ..................................................

               1701   -   1751
UN13834        --> TTTTTATCTCGACCC
                   ~~~~~~~~~~~~~~~
FD961850       <-- ...............
FD542679       <-- ...............
EW731184       <-- ...............
FD941038       <-- ...............
FY433775       <-- ...............
FD564044       <-- ...............
FY434912       <-- ...............
FY454178       <-- ...............
FD939908       <-- ...............
FY438942       <-- ...............
EW732661       <-- TTTTTATCTCGACCC
FY450881       <-- ...............
EW737117       --> ...............
FD945346       --> ...............
EY894467       --> ...............
FD567622       --> ...............
FD936773       --> ...............
FD538685       --> ...............
FD935529       --> ...............