1      -     51
UN13840        --> GCTGGTCCAAGGAGAAGTAAGAGACAGTCGGAGAAACAAGGATCATCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> GCTGGTCCAAGGAGAAGTAAGAGACAGTCGGAGAAACAAGGATCATCCTT
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               51     -    101
UN13840        --> GACGTGGAAAGATTCTTCCCTAAGCAAAAAGGAGGAGAATGGTGGATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> GACGTGGAAAGATTCTTCCCTAAGCAAAAAGGAGGAGAATGGTGGATGGG
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               101    -    151
UN13840        --> ATGACCCTAGAACATTTATAACAGCCCTTGAGAAAGTGGAAGCTTGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> ATGACCCTAGAACATTTATAACAGCCCTTGAGAAAGTGGAAGCTTGGATC
EX770473       --> ........gGAACATTTATAACAGCCCTTGAGAAAGTGGAAGCTTGGATC
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               151    -    201
UN13840        --> TTTTCACGCGTTGTTGAATCCATATGGTGGCAGACTTTGACACCGCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> TTTTCACGCGTTGTTGAATCCATATGGTGGCAGACTTTGACACCGCGTAT
EX770473       --> TTTTCACGCGTTGTTGAATCCATACGGTGGCAGACTTTGACACCGCGTAT
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               201    -    251
UN13840        --> GCAGTCTTCGGCAGCGAATGGTTCAGGCTCAAAGAAAAACTATGGTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> GCAGTCTTCGGCAGCGAATGGTTCAGGCTCAAAGAAAAACTATGGTACAA
EX770473       --> GCAGTCTTCGGCAGCGAATGGTTCAGGCTCAAAGAAAAACTATGGTACAA
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               251    -    301
UN13840        --> GTCGGAGTTCGGTGAACCAGGAACAAGGTGACTTCTCACTAGAGCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> GTCGGAGTTCGGTGAACCAGGAACAAGGTGACTTCTCACTAGAGCTTTGG
EX770473       --> GTCGGAGTTCGGTGAACCAGGAACAAGGTGACTTCTCACTAGAGCTTTGG
EX773282       --> ..................AGGAACAAGGTGACTTCTCACTAGAGCTTTGG
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               301    -    351
UN13840        --> AAAAAGGCTTTCAGAGATGCACACGAGCGTTTATGCCCTCTGCGAGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> AAAAAGGCTTTCAGGGATGCACACGAGCGTTTATGCCCTCTGCGAGCTAG
EX770473       --> AAAAAGGCTTTCAGAGATGCACACGAGCGTTTATGCCCTCTGCGAGCTAG
EX773282       --> AAAAAGGCTTTCAGAGATGCACACGAGCGTTTATGCCCTCTGCAAGCTAG
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               351    -    401
UN13840        --> TGGCCATGAATGTGGTTGTTTGCCCGTCCCTGCCCGTCTGATAATGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> TGGCCATGAATGTGGTTGTTTGCCCGTCCCTGCCCGTCTGATAATGGAAC
EX770473       --> TGGCCATGAATGTGGTTGTTTGTCCGTCCCTGCCCGTCTGATAATGGAAC
EX773282       --> TGGCCGTGAATGTGGTTGTTTGCCCGTCCCTGCCCGTCTGATAATGGAAC
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               401    -    451
UN13840        --> AGTGCGTGGCTCGGCTGGATGTCGCAATGTTCAATGCTATACTTCGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> AGTGCGTGGCTCGGCTGGATGTCGCAATGTTCAATGCTATACTTCGTGAT
EX770473       --> AGTGCGTGGCTCGGCTGGATGTCGCAATGTTCAATTCTATACTTCGTGAT
EX773282       --> AGTGCGTGGCTCGGCTGGATGTCGCAATGTTCAATGCTATACTTCGTGAT
FD987631       --> .....................................gATACTTCGTGAT
FD949157       --> ..................................................
EY938261       --> ..................................................

               451    -    501
UN13840        --> TCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> TCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTC
EX770473       --> TCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTC
EX773282       --> TCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTC
FD987631       --> TCTGATGAAAACTTCCCTACAGACCCTGTCTCTGATCCCATTGCTGACTC
FD949157       --> ..................................................
EY938261       --> ..................................................

               501    -    551
UN13840        --> CAGGGTCTTGCCTATTCCTTGTTCAATAACAAGTTTCGGTTCTGGTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> CAGGGTCTTGCCTATTCCTTGCTCAATAACAAGTTTCGGTTCTGGTGCCC
EX770473       --> CAGGGTCTTGCCTATTCCTTGTTCAATAACAAGTTTCGGTTCTGGTGCCC
EX773282       --> CAGGGTCTTGCCTATTCCTTGTTCAATAACAAGTTTCGGTTCTGGTGCCC
FD987631       --> CAGGGTCTTGCCTATTCCTTGTTCAATAACAAGTTTCGGTTCTGGTGCCC
FD949157       --> ..................................................
EY938261       --> ..................................................

               551    -    601
UN13840        --> TCCTCAAAAACTCGCTAGGAAACTGGTCCAGGTGGCTCACTGATTTATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..................................................
EX774657       <-- ..................................................
EY934437       <-- ..................................................
EY900199       --> TCCTGAAAAACTCGATAGGAAACTGGTCCAGGTGGCTCACTGATTTATTC
EX770473       --> TCCTCAAAAACTCGCTAGGAAACTGGTCCAGGTGGCTCACTGATTTATTC
EX773282       --> TCCTCAAAAACTCGCTAGGAAACTGGTCCAGGTGGCTCACTGATTTATTC
FD987631       --> TCCTCAAAAACTCGCTAGGAAACTGGTCCAGGTGGCTCACTGATTTATTC
FD949157       --> .................................................g
EY938261       --> ..................................................

               601    -    651
UN13840        --> GGCATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ..CATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
EX774657       <-- ...............................ACGTTGGTACTGCACCTTT
EY934437       <-- ..................................................
EY900199       --> GGCATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
EX770473       --> GGCATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
EX773282       --> GGCATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
FD987631       --> GGCATCGATGATGATGACCAAGAGAATAGCTACGTTGGTACTGCACCTTT
FD949157       --> GGCATCGATGATGATGACCAAGAAAATAGCTACGTTGGTACTGCACCTTT
EY938261       --> ..................................................

               651    -    701
UN13840        --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
EX774657       <-- CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
EY934437       <-- ....................................gATGATGCTTCCAA
EY900199       --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
EX770473       --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
EX773282       --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
FD987631       --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
FD949157       --> CAAGACTTTTATTCTTCTCAAGGCCTTGAGCGATCTAATGATGCTTCCAA
EY938261       --> ....................................gATGATGCTTCCAA

               701    -    751
UN13840        --> AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT  Raphanus raphanistrum subsp. landra
EX774657       <-- AAGATATGCTCCTCGACATTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT  Raphanus raphanistrum subsp. landra
EY934437       <-- AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAATGTTT  Raphanus sativus cv Early Scarlet Globe
EY900199       --> AAGATATGCTCCTCGACACTTGTGTTAGAAA...................  Raphanus raphanistrum subsp. maritimus
EX770473       --> AAGATATGCTCCTCGACATTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT  Raphanus raphanistrum subsp. landra
EX773282       --> AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT  Raphanus raphanistrum subsp. landra
FD987631       --> AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAACGTTT  Raphanus raphanistrum subsp. landra
FD949157       --> AAGACATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAATGTTT  Raphanus sativus cv Early Scarlet Globe
EY938261       --> AAGATATGCTCCTCGACACTTGTGTTAGAAAAGAGGTTTGCCCAATGTTT  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN13840        --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCCCGATGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCTCGATGAGTT  Raphanus raphanistrum subsp. landra
EX774657       <-- GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCCCGATGAGTT  Raphanus raphanistrum subsp. landra
EY934437       <-- GGTGCACCGTTGATCAAGAGAGTCTTGAATCGTTTTATCCCCGATGAGTT  Raphanus sativus cv Early Scarlet Globe
EY900199       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX770473       --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCCCGATGAGTT  Raphanus raphanistrum subsp. landra
EX773282       --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCCCGATGAGTT  Raphanus raphanistrum subsp. landra
FD987631       --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCATTTTGTCCTCGATGAGTT  Raphanus raphanistrum subsp. landra
FD949157       --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCGTTTTATCCCCGATGAGTT  Raphanus sativus cv Early Scarlet Globe
EY938261       --> GGTGCACCGTTGATCAAGAGAGTCTTGAATCGTTTTATCCCCGATGAGTT  Raphanus sativus cv Early Scarlet Globe

               801    -    851
UN13840        --> CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus raphanistrum subsp. landra
EX774657       <-- CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus raphanistrum subsp. landra
EY934437       <-- CTGCCCTGACCGAGTTCCTGTTGCTCTACTCGAAGCTCCTGAATCACAGG  Raphanus sativus cv Early Scarlet Globe
EY900199       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX770473       --> CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus raphanistrum subsp. landra
EX773282       --> CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus raphanistrum subsp. landra
FD987631       --> CTGCCCTGACCCAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus raphanistrum subsp. landra
FD949157       --> CTGCCCTGACCGAGTTCCTGTTGCTCTACTCGAAGCTCTTGAATCACAGG  Raphanus sativus cv Early Scarlet Globe
EY938261       --> CTGCCCTGACCGAGTTCCTGTTGCTCTACTCGAAGCTCCTGAATCACAGG  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN13840        --> AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
EX774657       <-- AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
EY934437       <-- AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
EY900199       --> ..................................................
EX770473       --> AGGGAGAg..........................................
EX773282       --> AGGGAGAAGAGA-GGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
FD987631       --> AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
FD949157       --> AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT
EY938261       --> AGGGAGAAGAGAAGGCTATGATCACAAGCTATCCATGTACGGCACCTCCT

               901    -    951
UN13840        --> CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
EX774657       <-- CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
EY934437       <-- CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> CCTGTCTACTCTC.....................................
FD987631       --> CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
FD949157       --> CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA
EY938261       --> CCTGTCTACTCTCCACCTTCAGGGACTTCAATCTCCACTATCATTGGAGA

               951    -   1001
UN13840        --> CTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- TTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
EX774657       <-- CTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
EY934437       <-- CTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> TTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
FD949157       --> CTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA
EY938261       --> CTTTGGACAGCCTCAAGCGCCTCACCTATGCCGAATCAGGTCTTCGGTTA

               1001   -   1051
UN13840        --> CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
EX774657       <-- CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
EY934437       <-- CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
FD949157       --> CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG
EY938261       --> CAAGAAAAGCCTACACAAGCGACGACGAGCTTGATGAGCTCAGTTCACCG

               1051   -   1101
UN13840        --> TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGT
EX774657       <-- TTGGCTGTTGTCCTTTTTCAACATTCGGATTCTAACAAGGTCAATAATGT
EY934437       <-- TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGT
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAG-TCAATAATGT
FD949157       --> TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGT
EY938261       --> TTGGCTGTTGTCCTTCTTCAACATTCGGATTCTAACAAGGTCAATAATGT

               1101   -   1151
UN13840        --> GGGTGCAGATGAGACAGTCAGGTATCAACTTCTCAGGGAGTGTTGGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- GGGTGCAGATGAGACAGTCAGGTATCAACTTCTCAGGGAGTGTTGGACCA
EX774657       <-- GGGTGCAGATGAGACAGTCAGGTATCAACTTCTCAGGGAGTGTTGGACCA
EY934437       <-- GGGTGCAGATGAGACAGTCAGGTATCAACTTCTCAGGGAGTGTTGGACCA
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> GGGTGCAGATGAGACAGTCAG-TATCAACTTCTCAGG-AGTGTTGGACCA
FD949157       --> GGGTGCAGATGAGACAGT................................
EY938261       --> GGGTGCAGATGAGACAGTCAGGTATCAACTTCTCAGGGAGTGTTGGACCA

               1151   -   1201
UN13840        --> ACGGGGACTGACCAGACATTGATGTGTGTTTTCTGTTTCAATTGTGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- ACGGGGACTGACCAGACATTGATGTGTGTTTTCTGTTTCAATTGTGACTT
EX774657       <-- ACGGGGACTGACCAGACATTGATGTGTGTTTTCTGTTTCAATTGTGACTT
EY934437       <-- ACGGGGACTGACCAGACATTGATGTGTTTTTTCTGTTTCAATTGTGACTT
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ACGGGGACTGAC-AGACATTGATGTGTGTTTTC.................
FD949157       --> ..................................................
EY938261       --> ACGGGGACTGACCAGACATTGATGTGTTTTTTCTGTTTCAATTGTGACTT

               1201   -   1251
UN13840        --> CTGAAGGTATTATTATGTGTCTTTGCCAGTTCGTTGTTTGGTGTTGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- CTGAAGGTATTATTATGTGTCTTTGCCAGTTCGTTGTTTGGTATTGCTAT
EX774657       <-- CTGAAGGTATTATTATGTGTCTTTGCCAGTTCGTTGTTTGGTATTGCTAT
EY934437       <-- CTGAAGGTATTATTATGTGTCTTTGCCAGTTCCTTGTTTGGTGTTGCTAT
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> CTGAAGGTATTATTATGTGTCTTTGCCAGTTCCTTGTTTGGTGTTGCTAT

               1251   -   1301
UN13840        --> GTATAGAGAATGTAGCCCGAACTCTAATTAACAGAAGTAACAGTATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- GTATAGAGAATGTAGCCCGAACTCTAATTAACAGAAGTAACAGTATCAAA
EX774657       <-- GTATAGAGAATGTAGCCCGAACTCTAATTAACAGAAGTAACAGTATCAAA
EY934437       <-- GTATAGAGAATGTAGCCCGAAATTTAATTAACAGAAGTAACAGcatgttt
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> GTATAGAGAATGTAGC..................................

               1301   -   1351
UN13840        --> GACATGTTTACACTCTTGAAATAGAATGTTGCCCGAGCGGAGTGTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983647       <-- GACATGTTTACACTCTTGAAATAGAATGTTGCCCGAGCGGAGTGTGTGTT
EX774657       <-- GACATGTTTACACTCTTGAAATAGAATGTTGCCCGAGCGGAGTGTGTGTT
EY934437       <-- tacact............................................
EY900199       --> ..................................................
EX770473       --> ..................................................
EX773282       --> ..................................................
FD987631       --> ..................................................
FD949157       --> ..................................................
EY938261       --> ..................................................

               1351   -   1401
UN13840        --> G.
                   ~~
FD983647       <-- G.
EX774657       <-- ac
EY934437       <-- ..
EY900199       --> ..
EX770473       --> ..
EX773282       --> ..
FD987631       --> ..
FD949157       --> ..
EY938261       --> ..