Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13847

               1      -     51
UN13847        --> GGATATGAGGGTATCATAGGACACAGACAGAACTCTGCGGTTTCTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- .........................................TTCTCTCTT
EX777113       <-- ..................................................
FD943597       <-- ..................................................
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> GGATATGAGGGTATCATAGGACACAGACAGAACTCTGCGGTTTCTCTCTT
EX773303       --> ....gggagctcgtctcgcgtgtCAGACAGAACTCTGCGGTTTCTCTCTT
FD564040       --> ..........gggtctcgcgtgtCAGACAGACCTCTGCG-TTTCTCTCTT
EX898139       --> ..................................ggGCGGTTTCTCTCTT

               51     -    101
UN13847        --> TACACCAGCCACCAGAGTACAAGGGGGGCGCCAAAGAGGCGACGTCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- -ACACCAGCCACCAGAGTACAAGGGGG-CGCCAAAGAGGCGACGTCTTAG
EX777113       <-- ..........................................CGTCTTAG
FD943597       <-- ..................................................
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> TACACCAGCCACCAGAGTACAAGGGGGGCGCCAAAGAGGCGACGTCTTAG
EX773303       --> TACACCAGCCACCAGAGTACAAGGGGGGCGCCAAAGAGGCGACGTCTTAG
FD564040       --> TACACCAGCCACCAGAGTACAAGGGGGGCGCCAAAGAGGCGACGTCTTAG
EX898139       --> TACACCAGCCACCAGAGTACAAGGGGGGCGCCAAAGAGGCGACGTCTTAG

               101    -    151
UN13847        --> CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
EX777113       <-- CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
FD943597       <-- ..................................................
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
EX773303       --> CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
FD564040       --> CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG
EX898139       --> CTTCTTGCTTGTGAATGATGACAATGCAGACAATCATCCACAAGCTCTCG

               151    -    201
UN13847        --> TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
EX777113       <-- TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
FD943597       <-- ..................................................
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
EX773303       --> TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
FD564040       --> TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA
EX898139       --> TTCTGTAGCTTCAACTCTGTCATAATAGAACGGAAACCAACAAGACTTCA

               201    -    251
UN13847        --> TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGATAT
EX777113       <-- TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGAGAT
FD943597       <-- ..................................................
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGAGAT
EX773303       --> TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGAGAT
FD564040       --> TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGAGAT
EX898139       --> TCTTTCTTCTTTTGTAACTCTTCCTCCAACTTTCTCAATTCAACCGATAT

               251    -    301
UN13847        --> TCTGCACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- TCTGCACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
EX777113       <-- TCTACACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
FD943597       <-- .................................CAGCTTGTGCAGCACCA
EX753889       <-- ..................................................
EX908335       <-- ..................................................
FD947704       --> TCTGCACAAGAGTAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
EX773303       --> TCTACACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
FD564040       --> TCTGCACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA
EX898139       --> TCTGCACAAGAGCAACGAATAAACAGTTCGTCGCAGCTTGTGCAGCACCA

               301    -    351
UN13847        --> TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
EX777113       <-- TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
FD943597       <-- TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
EX753889       <-- ....................TAAGGATGAATCAGTTTCGATTACGACAGT
EX908335       <-- ..................................................
FD947704       --> TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
EX773303       --> TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT
FD564040       --> TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTTGATTACGACAGT
EX898139       --> TCAGATGTTGAGACTTCTTCTAAGGATGAATCAGTTTCGATTACGACAGT

               351    -    401
UN13847        --> GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAATTCTCAGGAG
EX777113       <-- GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
FD943597       <-- GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
EX753889       <-- GGAGACCGGAAACATCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
EX908335       <-- ..................................................
FD947704       --> GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
EX773303       --> GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTCTCAGGAG
FD564040       --> GGAGACCGGAAACAGCAACGAAGTCAAGGTGCATGTTGAAGTTTCCGGAG
EX898139       --> GGAGACCGCAAACAGCAACGAAGTCAAGGTGCATGTTGAATTCTCAGGAG

               401    -    451
UN13847        --> A-GAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- A--AAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
EX777113       <-- A-GAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
FD943597       <-- A-GAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
EX753889       <-- AAAAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
EX908335       <-- ..................................................
FD947704       --> A-GAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
EX773303       --> A-GAAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC
FD564040       --> A-GAAGACTCAAACAGTATTCAGCACTGTCTTTGATAAAATGGTTGCTGC
EX898139       --> A--AAGACTCAAACAGTATTCAACACTGTCTTTGATAAAATGGTTGCTGC

               451    -    501
UN13847        --> AGCTCAGCCAATCCCGGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- AGCTCAGCCAATCCCAGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus cv Early Scarlet Globe
EX777113       <-- AGCTCAGCCAATCCCGGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus raphanistrum subsp. landra
FD943597       <-- AGCTCAGCCAATCCCAGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus cv Early Scarlet Globe
EX753889       <-- AGCTCAGCCAATCCCGGGTTTCCGAGGAGTTAAAGGAGGGAAGACCCCAG  Raphanus raphanistrum subsp. maritimus
EX908335       <-- agtTCAGCCAATCCCGGGTTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus cv Rat-Tail Radish #3870
FD947704       --> AGCTCAGCCAATCCCAGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus cv Early Scarlet Globe
EX773303       --> AGCTCAGCCAATCCCGGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus raphanistrum subsp. landra
FD564040       --> AGCTCAGCCAATCCCGGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus var. oleiformis
EX898139       --> AGCTCAGCCAATCCCAGGCTTCCGAAGAGTTAAAGGAGGGAAGACCCCAG  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN13847        --> ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAGAGTCTAT
EX777113       <-- ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
FD943597       <-- ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
EX753889       <-- ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
EX908335       <-- ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTTTAAAGTTTAT
FD947704       --> ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
EX773303       --> ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
FD564040       --> ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAAAGTCTAT
EX898139       --> ATATACCCAGAGAAATTTTGTTAGAGATCCTTGGATATTCTAGAGTCTAT

               551    -    601
UN13847        --> AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
EX777113       <-- AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
FD943597       <-- AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
EX753889       <-- AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
EX908335       <-- AGACAGGTGATAAAGAAGCTAATCAATTTTGCTATCGATGACTATGTTAA
FD947704       --> AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
EX773303       --> AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA
FD564040       --> AGACAGGTGATAAAGAAGCTAATCAATTCTGCTATCGATGACTATGTTAA
EX898139       --> AGACAGGTGATAAAGAAGCTAATCAACTCTGCTATCGATGACTATGTTAA

               601    -    651
UN13847        --> ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
EX777113       <-- ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
FD943597       <-- ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
EX753889       <-- ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
EX908335       <-- ACAGGAGGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
FD947704       --> ACACGAAGACCTAAAGGTTGGC............................
EX773303       --> ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG
FD564040       --> ACAGGAAGACCTAAAGGTTGGCAAAGAGTTATCTGTTGAGCAAAGCTATG
EX898139       --> ACAGGAAGACCTAAAGGTTGGCAAAGAGTTGTCTGTCGAGCAAAGCTATG

               651    -    701
UN13847        --> AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
EX777113       <-- AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
FD943597       <-- AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
EX753889       <-- AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
EX908335       <-- AAGATCTTGAAGAAACATTTGAACCAGGGGAAAGTTTCAGCTTTGATGCT
FD947704       --> ..................................................
EX773303       --> AAGATCTTGAAGAAACATTTGA-CCAGGCGAAAGTTTCAGCTTTGATGCT
FD564040       --> AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT
EX898139       --> AAGATCTTGAAGAAACATTTGAACCAGGCGAAAGTTTCAGCTTTGATGCT

               701    -    751
UN13847        --> ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAACCCTAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAACCCTAGGT
EX777113       <-- ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAACCCTAGGT
FD943597       <-- ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAACCCTAGGT
EX753889       <-- ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAACCCTAGGT
EX908335       <-- ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTCGAACCCTAGGT
FD947704       --> ..................................................
EX773303       --> ACTATAAAGCTTCAAGA-GTGAGCTGAACGA-TGTTGT-G-ACCCTA-GT
FD564040       --> ACTATA............................................
EX898139       --> ACTATAAAGCTTCAAGAAGTGAGCTGAACGAATGTTGTTGAAC.......

               751    -    801
UN13847        --> ACTTATCCATGTGATTTATCATTCTACCTGGTGTGGTAAACAATTCTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- ACTTATCCATGTGATTTATCATTCTACCTGGTGTGGTAAACAATTCTTGT
EX777113       <-- ACTTATCCATGTGATTTATCATTCTACCTGGTGTGGTAAACAGTTCTTGT
FD943597       <-- ACTTATCCATGTGATTTATCATTCTACCTGGTGTGGTAAACAATTCTTGT
EX753889       <-- ACTTATCCATGTGATTTATCATTCTACCTGGTGTGGTAAACAATTCTTGT
EX908335       <-- ACTTATCCATGTGATTTATCATTTTACCTGGTGTGGTAAACAATTTTTGT
FD947704       --> ..................................................
EX773303       --> ACTTATC-ATGTGATT-ATCATTCTACCTGtgtgtaacag..........
FD564040       --> ..................................................
EX898139       --> ..................................................

               801    -    851
UN13847        --> TGAGTAGGAAAGGATAAATCTCAGTTGGATTGAGCTTTGTGGTATAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX901763       <-- TGAGTAGGAAAGGATAAATCTCAGTTGGATTGAGCTTTGTGGTATAATAA
EX777113       <-- TGAGTAGGAAAGGATAAATCTCAGTTGGATTGAGCTTTGTGGTATAATAA
FD943597       <-- TGAGTAGGAAAGGATAAATCTCAGTTGGATTGAGCTTTGTGGTATAATAA
EX753889       <-- TGAGTAGGAAAGGATAAATCTCAGTTGGATTGAGCTTTGTGGTATAATAA
EX908335       <-- TGAGTAGGAAAGGATAAATTTCAGTTGGATTGAGCTTTGTGGTATAATAA
FD947704       --> ..................................................
EX773303       --> ..................................................
FD564040       --> ..................................................
EX898139       --> ..................................................

               851    -    901
UN13847        --> AGTTTGAAAACTTC
                   ~~~~~~~~~~~~~~
EX901763       <-- AGTTTGAAAACTTC
EX777113       <-- AGTTTGAAAACTTC
FD943597       <-- AGTTTGAAAACTTC
EX753889       <-- AGTT..........
EX908335       <-- AGTTTGAAAACTTC
FD947704       --> ..............
EX773303       --> ..............
FD564040       --> ..............
EX898139       --> ..............