Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13854

               1      -     51
UN13854        --> GGACAAAACTCATCTTCTCTCTCAATTCCTTAATCTCTCCACGGAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- GGACAAAACTCATCTTCTCTCTCAATTCCTTAATCTCTCCACGGAGACAT
EX751810       <-- .................................TCTCTCCACGGAGACAT
FD545776       <-- ..................................................
EY931039       --> GGACAAAACTCATCTTCTCTCTCAATTCCTTAATCTCTCCACGGAGACAT
FD549740       --> ....ggacaaaacaTTCTCTCTCAATTCCTTAATCTCTCCACGGAGACAT
FD965101       --> ....ggacaaaacaTTCTCTCTCAATTCCTTAATCTCTCCACGGAGACAT
EX747675       --> .....................ggAATTCCTTAATCTCTCCACGGAGACAT

               51     -    101
UN13854        --> C------AAAGATCAATCTCTTGTCACTTTTTTCACCGCCAGATCTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- CTAAAACAAATATCAATTTCTCGTCACTTTTTTCACCACCAGATCTCAAC
EX751810       <-- C------AAAGATCAATCTCTTGTCACTTTTTTCACCGCCAGATCTCAAC
FD545776       <-- ...............................TTCACCGCCAGATCTCAAC
EY931039       --> CTAAAACAAATATCAATTTCTCGTCACTTTTTTCACCACCAGATCTCAAC
FD549740       --> C------AAAGATCAATCTCTTGTCACTTTTTTCACCGCCAGATCTCAAC
FD965101       --> C------AAAGATCAATCTCTTGTCACTTTTTTCACCGCCAGATCTCAAC
EX747675       --> C------AAAGATCAATCTCTTGTCACTTTTTTCACCGCCAGATCTCAAC

               101    -    151
UN13854        --> TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
EX751810       <-- TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
FD545776       <-- TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
EY931039       --> TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
FD549740       --> TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
FD965101       --> TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT
EX747675       --> TTCGTCTCCATCATAGCTCGTCGTTCTTACAGCCCTGCGTGTGTTTTTAT

               151    -    201
UN13854        --> TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
EX751810       <-- TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
FD545776       <-- TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
EY931039       --> TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
FD549740       --> ..................................................
FD965101       --> TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC
EX747675       --> TTACAGCTCGTCGTTCTCGTCACCTTTTTCTCTCGCACTCTCTGTCTCTC

               201    -    251
UN13854        --> TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
EX751810       <-- TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
FD545776       <-- TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
EY931039       --> TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
FD549740       --> ..................................................
FD965101       --> TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA
EX747675       --> TCTCCTAGTGTTCTGATTCTGGTTTTGTTTTTGTGTTCTTAGTTAAATAA

               251    -    301
UN13854        --> CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCCAATCTCAATCTAACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCAAATCTCAATCTAACATG
EX751810       <-- CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCCAATCTCAATCTAACATG
FD545776       <-- CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCCAATCTCAATCTAACATG
EY931039       --> CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCAAATCTCAATCTAACATG
FD549740       --> ..................................................
FD965101       --> CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCCAATCTCAATCTAACATG
EX747675       --> CTCGTGCTCTTTTTTTGCCAGATTTACTTTTCCAATCTCAATCTAACATG

               301    -    351
UN13854        --> TCTGATTCAAATGTTTTTTCGCTTGAGATTCTTGTGATTTGTTTAAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TCTGATTCAAATGTTTT-CCGCTTGAGATTCTTGTGATTTGTTTAAAAAT
EX751810       <-- TCTGATTCAAATGTTTTTTCGCTTGAGATTCTTGTGATTTGTTTAAAAAT
FD545776       <-- TTTGATTCAAATGTTTTTTCGCTTGAGATTCTTGTGATTTGCTTAAAAAT
EY931039       --> TCTGATTCAAATGTTTT-CCGCTTGAGATTCTTGTGATTTGTTTAAAAAT
FD549740       --> ..................................................
FD965101       --> TCTGATTCAAATGTTTTTTCGCTTGAGATTCTTGTGATTTGTTTAAAAAT
EX747675       --> TCTGATTCAAATGTTTTTTCGCTTGAGATTCTTGTGATTTGTTTAAAAAT

               351    -    401
UN13854        --> TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATAGCTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATAGCTTGAG
EX751810       <-- TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATAGCTTGAG
FD545776       <-- TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATATCTTGAG
EY931039       --> TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATAGCTTGAG
FD549740       --> ..................................................
FD965101       --> TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGA---TAGCTTGAG
EX747675       --> TATTTATGATTTTCTGTAGATTTAAGAAACGAAGAAGAAGATAGCTTGAG

               401    -    451
UN13854        --> AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
EX751810       <-- AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
FD545776       <-- AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
EY931039       --> AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
FD549740       --> ..................................................
FD965101       --> AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG
EX747675       --> AGAGACAGCCTCAGAACCATGGCAGAAGAAAAAGCGACGAACATACGGCG

               451    -    501
UN13854        --> ATGGACAAACGCGGGGCTCGAGCATGAGAAACTCTGATGCAAGGAGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- ATGGACAAGCGCGGGGCTCGAGCATGAGAAACGCTGATGCAAGGAGGAGG
EX751810       <-- ATGGACAAACGCGGGGCTCGAGCATGAGAAACTCTGATGCAAGGAGGAGA
FD545776       <-- ATGGACAAACGCGGGGCTCGAGCATGAGAAACTTTGATGCAAGGAGGAGG
EY931039       --> ATGGACAAGCGCGGGGCTCGAGCATGAGAAACGCTGATGCAAGGAGGAGG
FD549740       --> ..................................................
FD965101       --> ATGGACAAACGCGGGGCTCGAGCATGAGAAACTCTGATGCAAGGAGGAGG
EX747675       --> ATGGACAAACGCGGGGCTCGAGCATGAGAAACTCTGATGCAAGGAGGAGA

               501    -    551
UN13854        --> ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG
EX751810       <-- ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG
FD545776       <-- ATGGAGAGGAAGGTGACAGGCGGCGTGGATTAGATTAGATTAGGTTTAGG
EY931039       --> ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG
FD549740       --> ..................................................
FD965101       --> ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG
EX747675       --> ATGGAGAGGAAGGTGACAGGCGGCGTAGATTAGATTAGATTAGGTTTAGG

               551    -    601
UN13854        --> CTTAGGTTTTGGTTCATTAGGTTTGGTTTATTTAGGTTTTGGTTTAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- CTTAGGTTTTGGTTCATTAGGTTTGGTTTAGTTAGGTTTTGGTTTAATAT  Raphanus sativus var. oleiformis
EX751810       <-- CTTAGGTTTTGGTTCATTAGGTTTGGTTTATTTAGGTTTTGGTTTAATAT  Raphanus raphanistrum subsp. maritimus
FD545776       <-- CTTAGGTTTTGGTTCATTAGGTTTGGTTTAGTTAGGTTTTGGTTTAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931039       --> CTTAGGTTTTGGTTCATTAGGTTTGGTTTAGTTAGGTTTTGGTTTAATAT  Raphanus sativus var. oleiformis
FD549740       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965101       --> CTTAGGTTTTGGTTCATTAGGTTTGGTTTATTTAGGTTTTGGTTTAATAT  Raphanus raphanistrum subsp. maritimus
EX747675       --> CTTAGGTTTTGGTTCATTAGGTTTGGTTTATTTAGGTTTTGGTTTAATAT  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN13854        --> GTTGCAATGTAAACCGGGTACTGCTTTTTTAGATTTTGTTTTTAAACCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- GTTGCAATGTAAACCGGGTAGTGCTTTTTTAGATTTTGTTTTTAAACCCG
EX751810       <-- GTTGCAATGTAAACCGGGTACTGCTTTTTTAGATTCTGTTTTTAAACCCG
FD545776       <-- GTTGCAATGTAAACCGGGTACTGCTTTTTTAGATTTTGTTTTTAAACCCG
EY931039       --> GTTGCAATGTAAACCGGGTAGTGCTTTTTTAGATTTTGTTTT-AAACCCG
FD549740       --> ..................................................
FD965101       --> GTTGCAATGTAAACCGGGTACTGCTTTTTTAGATTTTGTTTTTAAACCCG
EX747675       --> GTTGCAATGTAAACCGGGTACTGCTTTTTTAGATTCTGTTTTTAAACCCG

               651    -    701
UN13854        --> GTTTGTATGTAAACCGGTTTAATTTGTAAACTGAAAATATTTGTAATCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- GTTTGTATGTAAACCGGTTTAATTTGTAAACCGAAAATATTTGTAATCTG
EX751810       <-- GTTTGTATGTAAACCGGTTTAATTTGTAAACTGAAAATATTTGTAATCCG
FD545776       <-- GTTTGTATGTAAACCGGTTTAATTTGTAAACTGAAAATATTTGTAATCTG
EY931039       --> GTTTGTATGTAAACCGGTTTAATTTGTAAACCGAAA-TATTTGTAATCTG
FD549740       --> ..................................................
FD965101       --> GTTTGTATGTAAACCGGTTTAATTTGTAAACTGAAAATATTTGTAATCTG
EX747675       --> GTTTGTATGTAAACCGGTTTAATTTGTAAACTGAAAATATTTGTAATCCG

               701    -    751
UN13854        --> TGGTTTAATTTATAAACTGAAATCAGTTGTATACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY927090       <-- TGGTTTAATTTATAAACT..................
EX751810       <-- TGGTTTAATTTATAAACTG.................
FD545776       <-- TGGTTTAATTTATAAACTGAAATCAGTTGTATACCG
EY931039       --> TGGTTTAATTTATAAACT..................
FD549740       --> ....................................
FD965101       --> TGGTTTAATTTATAAACTGAAA..............
EX747675       --> TGGTTTAATTTATAAACTG.................