Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13860

               1      -     51
UN13860        --> GCACGATAAAATCAGCCAATAAAGATAAATGATAATTCAACAAACAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> GCACGATAAAATCAGCCAATAAAGATAAATGATAATTCAACAAACAAACC
EY909477       --> ..gCGATAAAATCAGCCAATAAAGATAAATGATAATTCAACAAACAAACC
FD944159       --> ..................................................

               51     -    101
UN13860        --> CATAGTTTAAAAAATATATGCCTCCATCCCAATTGGAGAACATGAAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> CATAGTTTAAAAAATATATGCCTCCATCCCAATTGGAGAACATGAAACCC
EY909477       --> CATAGTTTAAAAAATATATGCCTCCATCCCAATTGGAGAACATGAAACCC
FD944159       --> ..................................................

               101    -    151
UN13860        --> TTCAAAGGGTTAATCTGTTCTGTTTGAAAAGGAAAAAAAAAGATATGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> TTCAAAGGGTTAATCTGTTCTGTTTGAAAAGGAAAAAAAAAGATATGATC
EY909477       --> TTCAAAGGGTTAATCTGTTCTGTTTGAAAAGGAAAAAAAA---TATGATC
FD944159       --> ..................................................

               151    -    201
UN13860        --> TTGTTTTTTGGTCTATTGGATGATAAAACAAAAAAAAAAAATGAGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ......ttcGGTCTACTGGATGATTAAA-AAAAAAAAAA---AAGATGAA
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> TTGTCTTT-GGTCTATTGGATGATAAAACAAAAAAAAAAAATGAGATGAA
EY909477       --> TTGTTTTTTGGTCTATTGGATGATAAAACAAAAAAAAA---TGAGATGAA
FD944159       --> .........GGTCTATTGGATGATAAAACAAAAAAAAAA--TGAGATGAA

               201    -    251
UN13860        --> ATGAAAAACTGGAGATGCCAGAGATTAATATCTCTGAGACATGATTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ATGAAAAACTGGAGATGCCAGAGATTAATATCTCTGAGACATGATTGAGA
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> ATGAAAAACTGGAGATGCCAGAAATTAAT--CTCTGAGACATGATTGAGA
EY909477       --> ATGAAAAACTGGAGATGCCAGAGATTAATATCTCTGAGACATGATTGAGA
FD944159       --> ATGAAAAACTGGAGATGCCAGAGATTAATATCTCTGAAACATGATTGAGA

               251    -    301
UN13860        --> GTCGACCAGACTCACCTAAGATAAGCCTCTCTACTTCCTTTAAGGCTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- GTAGACCAGACTCACCTAAGATAAGCCTCTCTACTTCCTTTAAGGCTTAC
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> GTCGACCAGACTCACCTAAGATAAGCCTCTCTACTTCCTTTAAGGCTTAC
EY909477       --> GTCGACCAGACTCACCTAAGATAAGCCTCTCTACTTCCTT-AAGGCTTAC
FD944159       --> GTCGGCCAGACTCACCTAAGATAAGCCTCTCTACTTCCTTTAAGGCTTAC

               301    -    351
UN13860        --> AAAAGCAAAAAAAAAAA---GGGTGCAGCCATGTGTACTCAAGAAGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- AAAAGCAAAAAAAAAAA--AGGGTGCAGCCAAGTGTACTCAAGAAGCAAC
EY913202       <-- ..................................................
FD948358       <-- ..................................................
FD538029       --> AAAAGCAAAAAAAAAAA---GG-TGCAGCCATGTGTACTCAAGAAGCAAC
EY909477       --> AAAAGCAAAAAAAAAA-----GGTGCAGCCATGTGTACTCAAGAAGCAAC
FD944159       --> AAAAGCAAAAAAAAAAAAAAGGGTGCAGCCAAGTGTACTCAAGAAGCAAC

               351    -    401
UN13860        --> TGTTGTGGAAGATTGCTGCTTCTCAAGTTGCTCCTTTAGTATCTCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- TGTTGTGGAAGATTGCTGCTTCTCAAGTTGCTCCTTTAGTATCTCAGCTC
EY913202       <-- .....................................AGTATCTCAGCTC
FD948358       <-- ..................................................
FD538029       --> TGTTGCGGAAGATTGCTGCTTCTCAAGTTGCTCCTTTAGTATCTCAAATC
EY909477       --> TGTTGTGGAAGATTGCTGCTTCTCAAGTTGCTCCTTCAGTATCTCAGCTC
FD944159       --> TGTTGTGGAAAATTGCTGCTTCTCAAGTTGCTCCTTTAGTATCTCAGCTC

               401    -    451
UN13860        --> TTCTCTGCTCCGTGTGCTGAGCGATATTGTTTGCGAGCCCTTCGTAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- TTCTCTGCTCCGTGTGCTGAGCGATATTGTTTGCGAGCCCTTCGTAGTGC
EY913202       <-- T-CTCTGCTCCGTGTGCTGAGCGATAT-G-TTGCGAGCC-TTCGTAGTGC
FD948358       <-- ..................................................
FD538029       --> TTCTCTGCTCCGTGTGCTGAGCGATATTGTTTGCGAGCCCTTCGTAGTGC
EY909477       --> TTCTCTGCTCCGTGTGCTGAGCGATATTGTTTGCGAGCCCTTCGTAGTGC
FD944159       --> TTCTCTGCTCCGTGTGCTGAGCGATATTGTTTGCGAGCCCTTCGTAGTGC

               451    -    501
UN13860        --> GGGTCTAGTGTCTGCCTAAGGCTTTGGAACCTTAGCGAGTCTGTTGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- GGGTCTAGTGTCTGCCTAAGGCTTTGGAACCTTAGCGAGTCTGTTGCTTG  Raphanus sativus var. oleiformis
EY913202       <-- GGGTCTAGTGTCTGC-TAAGGCTTTGGAAC-TGAGCGAGTCTGTTGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948358       <-- ...................GGCTTTGGAAC-TTAGCGAGTCTGTTGCTTG  Raphanus sativus cv Early Scarlet Globe
FD538029       --> GGGTCTAGTGTCTGCCTAAGGCTTTGGAACCTGAGCGAGTCCGTTGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909477       --> GGGTCTAGTGTCTGCCTAAGGCTTTGGAACCTGAGCGAGTCTGTTGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944159       --> GGGTCTAGTGTCTGCCTAAGGCTTTGGAACCTTAGCGAGTCTGTTGCTTG  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN13860        --> CATTGCTGTGACTGCATCCATGAAGAGTATGAAAGGATCCACTTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- CATTGCTGTGACTGCATCCATGAAGAGTATGAAAGGATCCACTTCATCAA
EY913202       <-- CATTGCTGTGACTGCATCCACGAAGAGTATGAAAGGATCCACTTCATCAA
FD948358       <-- CATTGCTGTGACTGCATCCATGAAGAGTATGAAAGGATCCACTTCATCAA
FD538029       --> CATTGCTGTGACTGCATCCATGAAGAGTATGAAAGGATCCACTTCATCAA
EY909477       --> CATTGCTGTGACTGCATCCACGAAGAGTATGAAAGGATCCACTTCATCAA
FD944159       --> CATTGCTGTGACTGCATCCATGAAGAGTATGAAAGGATCCACTT......

               551    -    601
UN13860        --> TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
EY913202       <-- TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
FD948358       <-- TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
FD538029       --> TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
EY909477       --> TTGGAGAGTCTAATTCCTCATCATCACTATAGTCATCTTCCGAAAATTCA
FD944159       --> ..................................................

               601    -    651
UN13860        --> TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
EY913202       <-- TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
FD948358       <-- TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
FD538029       --> TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
EY909477       --> TCATCATCGCTGTAAGAGCGGAAGTCCTTTGCCTGTGCTGCTAACTTGCG
FD944159       --> ..................................................

               651    -    701
UN13860        --> GAGTGTACTTTCATCAGTTTCATCTGGATTCTCCTCATCATCTTCATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- GAGTGTACTTTCATCAGTTTCATCTGGATTCTCATCATCATCTTCATCAT
EY913202       <-- GAGTGTACTTTCATCAGTTTCATCTGGATTCTCCTCATCATCTTCATCAT
FD948358       <-- GAGTGTACTTTCATCAGTTTCATCTGGATTCTCCTCATCATCTTCATCAT
FD538029       --> GAGTGTACTTTCATCAGTTTCATCTGGATTCTCCTCATCATCTTCATCAT
EY909477       --> GAGTGTACTTTCATCAGTTTCATCTGGATTCTCCTCATCATCTTCATCAT
FD944159       --> ..................................................

               701    -    751
UN13860        --> CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCTTCTTCATCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCc............
EY913202       <-- CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCTTCTTCATCTTCT
FD948358       <-- CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCTTCTTCATCTTCT
FD538029       --> CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCTTCTTCATCTTCT
EY909477       --> CTGTCTCAAAGTCATCCATGTTGTCGTCATCGCCATCTTCTTCATCTTCT
FD944159       --> ..................................................

               751    -    801
UN13860        --> TCCTCTTCTGCCTTTGCAGCTTCAGCAAGTTGATCCTTGTATGCCACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- TCCTCTTCTGCCTTTGCAGCTTCAGCAAGTTGATCCTTGTATGCCACCAA
FD948358       <-- TCCTCTTCTGCCTTTGCAGCTTCAGCAAGTTGATCCCTGTATGCCACCAA
FD538029       --> TCCTCTTCTGCCTTTGCAGCTTCAGCAAGTTGATCCTTGTATGCCACCAA
EY909477       --> TCCTCTTCTGCCTTTGCAGCTTCAGCAAGTTGATCCTTGTATGCCAC...
FD944159       --> ..................................................

               801    -    851
UN13860        --> AAGCTCAAGAAGAGCCCTGAATACAGGTGGCAAGACTTCTCCGGGCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- AAGCTCAAGAAGAGCCCTGAATACAGGTGGCAAGACTTCTCCGGGCAATT
FD948358       <-- AAGCTCAAGAAGAGCCCTGAATACAGGTGGCAAGACTTCTCCGGGCAATT
FD538029       --> AAGCTCAAGAAGAGCCCTGAATACAG-TGGCAAGACT.............
EY909477       --> ..................................................
FD944159       --> ..................................................

               851    -    901
UN13860        --> GACCAGCAGGAAGACTGAGAATTGATGTCAAACCCAAGATGCAAACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- GACCAGCAGGAAGACTGAGAATTGATGTCAAACCCAAGATGCAAACTTTC
FD948358       <-- GACCAGCAGGAAGACTGAGAATTGATGTCAAACCCAAGATGCAAACTTTC
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               901    -    951
UN13860        --> TTATCATGCTCTCCCTTGAAGTTAGCATGTGCACCACTCTTCTTCTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- TTATCATGCTCTCCCTTGAAGTTAGCATGTGCACCACTCTTCTTCTTTTT
FD948358       <-- TTATCATGCTCTCCCTTGAAGTTAGCATGTGCACCACTCTTCTTCTTTTC
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               951    -   1001
UN13860        --> TTGCAGCATCTGGAGCCATATGGTCAAAATTTCCGTTGCAAAACCGGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- TTGCAGCATCTGGAGCCATATGGTCAAAATTTCCGTTGCAAAACCGGCGC
FD948358       <-- TTGCAGCATCTGGAGCCATATGGTCAAAATTTCCGTTGCAAAACCGGCGC
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               1001   -   1051
UN13860        --> GTTGCAATATGGCAAGTGTCAAAGGGGCATTGTAGTAGAAGGCATTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- GTTGCAATATGGCAAGTGTCAAAGGGGCATTGTAGTAGAAGGCATTTGCA
FD948358       <-- GTTGCAATATGGCAAGTGTCAAAGGGGCATTGTAGTAGAAGGCATTTGCA
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               1051   -   1101
UN13860        --> ACCACTTCAATCAGAAGACATTTAAAGGAAGATTTCTCAGCGCCTCGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- ACCACTTCAATCAGAAGACATTTAAAGGAAGATTTCTCAGCACCTCGTAG
FD948358       <-- ACCACTTCAATCAGAAGACATTTAAAGGAAGATTTCTCAGCGCCTCGTAG
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               1101   -   1151
UN13860        --> CCGATCTAATGTGATTCTCAAGTAAGGCTCCACACATTGATCTACCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- CCGATCTAATGTGATTCTCAAGTAAGGCTCCACACATTGATCTACCTGGC
FD948358       <-- CCGATCTAATGTGATTCTCAAGTAAGGCTCCACACATTGATCCACCTGGC
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               1151   -   1201
UN13860        --> CCTTACAAGTCTGAAGCACGATACTTATTAGCTTCGGAGCTGGCTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD562800       <-- ..................................................
EY913202       <-- CCTTACAAGTCTGAAGCACGATACctcc......................
FD948358       <-- CCTTACAAGTCTGAAGCACGATACTTATTAGCTTCGGAGCTGGCTCAAGG
FD538029       --> ..................................................
EY909477       --> ..................................................
FD944159       --> ..................................................

               1201   -   1251
UN13860        --> TCACTATCATCAATC
                   ~~~~~~~~~~~~~~~
FD562800       <-- ...............
EY913202       <-- ...............
FD948358       <-- TCACTATCATCAATC
FD538029       --> ...............
EY909477       --> ...............
FD944159       --> ...............