RadishBase

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Alignment for radish unigene UN13877

               1      -     51
UN13877        --> GGACTCTAGAAAAGACCATTCTGGTTCTATATTAACCGAGAACGTGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> GGACTCTAGAAAAGACCATTCTGGTTCTATATTAACCGAGAACGTGAAAG
FD940085       --> GGACTCTAGAAAAGACCATTCTGGTTCTATATTAACCGAGAACGTGAAAG
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               51     -    101
UN13877        --> CCTCCCATAAAATAATTGAAAGTCCTTTTAGCAAAATCATATCTAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> CCTCCCATAAAATAATTGAAAGTCCTTTTAGCAAAATCATATTTAAAGAA
FD940085       --> CCTCCCATAAAATAATTGAAAGTCCTTTTAGCAAAATCATATCTAAAGAA
FD535834       --> ....ggATAAAATAATTGAAAGTCCTTTTAGCAAAATCATATCTAAAGAA
EY898948       --> ......ggAAAATAATTGAAAGTCCTTTTAGCAAGATCATATCTAAAGAA
FD533502       --> ................gGAAAGTCCTTTTAGCAAAATCACATCTAAAGAA
FD570460       --> ...............ggGAAAGTCCTTTTAGCAAAATCATATCTAAAGAA
EW718249       --> ..................gAAGTCCTTTTAGCAAAATCATATCTAAAGAA
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               101    -    151
UN13877        --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGGTCATCATC
FD940085       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
FD535834       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
EY898948       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
FD533502       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
FD570460       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
EW718249       --> ATAAATAGTTACAGTCATCAATAATTCACTTTGTTCTCAAGATCATCATC
FD948528       --> ..............................ggGTTCTCAAGATC--C-TC
FD955385       --> ..................................................
FD950129       --> ..................................................

               151    -    201
UN13877        --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> ATC---TGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD940085       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD535834       --> ATC---TGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
EY898948       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD533502       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD570460       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
EW718249       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD948528       --> ATCATCTGACTACACGTTGATTGGTTTAAGAGGAAGGCTCGAATCTACCA
FD955385       --> ..................................................
FD950129       --> ..................................................

               201    -    251
UN13877        --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD940085       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD535834       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
EY898948       --> GAGTGGGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD533502       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD570460       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGATGTGGTTCGACGAT
EW718249       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD948528       --> GAGTGAGATCTGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD955385       --> .........ggGACTGGTTAAAAATGGGGAGGACGACGTGGTTCGACGAT
FD950129       --> ..................................................

               251    -    301
UN13877        --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCCGAGGAAGACCGGATGCTCGT
FD940085       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD535834       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
EY898948       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD533502       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD570460       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
EW718249       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD948528       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD955385       --> GACGGGTTAAAGAAAGGAGAGTGGACGGCGGAGGAAGACCGGATGCTCGT
FD950129       --> ..................................................

               301    -    351
UN13877        --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ................................GGCGTACCCTGC-TAAGA
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> CGTTTACATCAGCGAACACGGTCTCGGTGAGTGGCGTACCCTGCCTAAGA
FD940085       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD535834       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
EY898948       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD533502       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD570460       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
EW718249       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD948528       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD955385       --> CGTTTACATCAGCGAACACGGTCTCGGGGAGTGGCGTACCCTGCCTAAGA
FD950129       --> ..................................................

               351    -    401
UN13877        --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD531413       <-- ............................TTGTAGATTAAGGTGGCTGAAT
EY911018       <-- ..................................................
EW721998       <-- ..................................................
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD940085       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD535834       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
EY898948       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD533502       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD570460       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
EW718249       --> GAGCCGGTCTGCAAAGATGTGTAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD948528       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD955385       --> GAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAGGTGGCTGAAT
FD950129       --> ..................................................

               401    -    451
UN13877        --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. maritimus
FD531413       <-- TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. maritimus
EY911018       <-- .....................................CTCAGGAGGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721998       <-- .............................................aggag  Raphanus sativus var. oleiformis
FD951457       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD936045       <-- ..................................................  Raphanus sativus var. oleiformis
FD945669       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944297       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD574456       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV535741       --> TATTTGAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940085       --> TATTTGAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus sativus var. oleiformis
FD535834       --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. maritimus
EY898948       --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. maritimus
FD533502       --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus raphanistrum subsp. maritimus
FD570460       --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus sativus cv Early Scarlet Globe
EW718249       --> TATTTGAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus sativus var. oleiformis
FD948528       --> TATTTAAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus sativus cv Early Scarlet Globe
FD955385       --> TATTTGAGGCCTGGAATTAAAAGAGGCAAGTTCACTCCTCAGGAGGAAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD950129       --> .......................................gAGGAGGAAGA  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN13877        --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- AGATATTACCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD531413       <-- AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
EY911018       <-- AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
EW721998       <-- AGATAT-ATCAAATTTCAT-CTC-TCTTGGAAACAGGTGGGCAGCAATAG
FD951457       <-- ...........................TGGAAACAGGTGGGCAGCAATAG
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> AGATATTATCAAATTTCATTCTCTCCTTGGAAACAGGTGGGCAGCAATAG
FD940085       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACGGGTGGGCAGCAATAG
FD535834       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
EY898948       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD533502       --> AGATATTACCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD570460       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
EW718249       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD948528       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD955385       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG
FD950129       --> AGATATTATCAAATTTCATTCTCTTCTTGGAAACAGGTGGGCAGCAATAG

               501    -    551
UN13877        --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD531413       <-- CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
EY911018       <-- CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
EW721998       <-- CAAAGCAAATGCCAAACCGAACTGACAATGAC-TAAAAA-TCATTGGAAC
FD951457       <-- CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD940085       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD535834       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
EY898948       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD533502       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD570460       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
EW718249       --> CAAAGCAAATGCCAAACCGAACTGACAATGAC-TAAAAAATCATTGGAAC
FD948528       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD955385       --> CAAAGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC
FD950129       --> CAAGGCAAATGCCAAACCGAACTGACAATGACATAAAAAATCATTGGAAC

               551    -    601
UN13877        --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD531413       <-- TCATGCCTAAAGAAGAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
EY911018       <-- TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
EW721998       <-- TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD951457       <-- TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> TCATGCCTAAAGAAAAGACTCGTTAGAAGCGGCATCGATCCCACGACCCA
FD940085       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD535834       --> TCATGCCTAAAGAAGAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
EY898948       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD533502       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD570460       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
EW718249       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD948528       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD955385       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA
FD950129       --> TCATGCCTAAAGAAAAGACTCGCTAGAAGCGGCATCGATCCCACGACCCA

               601    -    651
UN13877        --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
FD531413       <-- TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
EY911018       <-- TAGGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
EW721998       <-- TAAGCCTACCGTCACCGTTGCGAAAGCCACTTTCTCCTCGACGACGTCGT
FD951457       <-- TAAGCCTACCGTCACCGTTGCGAAAGCCACTTTCTCCTCGACGACGTCGT
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
FD940085       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTC-TCCTCGACGACGTCGT
FD535834       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
EY898948       --> TAAGCCTATCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
FD533502       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
FD570460       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
EW718249       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTTCTCCTCGACGACGTCGT
FD948528       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT
FD955385       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTTCTCCTCGACGACGTCGT
FD950129       --> TAAGCCTACCGTCACCGTTGCGAAAGCCACTTCCTCCTCGACGACGTCGT

               651    -    701
UN13877        --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
FD531413       <-- CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
EY911018       <-- CTCCAACACCGACCCCTTCGTCGTCCTCTTCTACTTCTTCCTCTTTTTCC
EW721998       <-- CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
FD951457       <-- CTCCAACACCGACCCCTTCTTCGTCCTCTTCTACTTCTTCCTCTTTTTCC
FD936045       <-- ...........................................TTTTTCC
FD945669       <-- ...........................................TTTTTCC
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCCTCTTTTTCC
FD940085       --> CTC-AACACCAACCCCTTCTTCGTC-TCTTCTACTTCTctct........
FD535834       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
EY898948       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTT..............
FD533502       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
FD570460       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTT---TTTCC
EW718249       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
FD948528       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC
FD955385       --> CTCCAACACCGACCCCTTCTTCGTCCTCTTCTACTTCTTCCTCTTTTTCC
FD950129       --> CTCCAACACCAACCCCTTCTTCGTCCTCTTCTACTTCTTCTTCTTTTTCC

               701    -    751
UN13877        --> TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus raphanistrum subsp. maritimus
FD531413       <-- TCTACAGGCTCCGCACGTCTACTTAACAAGCCTGCTACTGGAATCTCGTC  Raphanus raphanistrum subsp. maritimus
EY911018       <-- TCTACAGGCTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721998       <-- TCTACAGGCTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus var. oleiformis
FD951457       <-- TCTACAGGCTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD936045       <-- TCTACAGGCTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus var. oleiformis
FD945669       <-- TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Early Scarlet Globe
FD944297       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD574456       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV535741       --> TCTACAAGCTCTGCACGTCTACTTAACAAGCTTGCTGCTGGAATCTCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940085       --> ..................................................  Raphanus sativus var. oleiformis
FD535834       --> TCTACAGGCTCCGCACGTCTACTTAACAAGCCTGCTACTGGAATCTCGTC  Raphanus raphanistrum subsp. maritimus
EY898948       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD533502       --> TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus raphanistrum subsp. maritimus
FD570460       --> TCTACAG-CTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Early Scarlet Globe
EW718249       --> TCTACAG-CTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus var. oleiformis
FD948528       --> TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Early Scarlet Globe
FD955385       --> TCTACAGGCTCTGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD950129       --> TCTACAGGCTCCGCACGTCTACTTAACAAGCTTGCTACTGGAATCTCGTC  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN13877        --> GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD531413       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
EY911018       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
EW721998       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCACGTCGGAGCCA
FD951457       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD936045       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD945669       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD944297       <-- GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD574456       <-- ......................A-TCAAGAATGTCATCATGTCGGAGCCA
EV535741       --> GAGAAAACATGAACTCGACAGGAATCAAGAATGTCATCACGTCAGAGCCA
FD940085       --> ..................................................
FD535834       --> GAGAAA-CATGAACTCGATAGGA-TCAAGAATGTCATCATG.........
EY898948       --> ..................................................
FD533502       --> GAGAAA-CATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD570460       --> GAGAAA-CATGAACTCGATAGGA-TCAg......................
EW718249       --> GAGAAA-CATGA-CTCGATAGGA-TCAAGA-TGTCATCACGTCG-AG-CA
FD948528       --> GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD955385       --> GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA
FD950129       --> GAGAAAACATGAACTCGATAGGA-TCAAGAATGTCATCATGTCGGAGCCA

               801    -    851
UN13877        --> AGACAAGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- AGACAAGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus raphanistrum subsp. maritimus
FD531413       <-- AGACAAGTCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus raphanistrum subsp. maritimus
EY911018       <-- AGACAAGCCGTTGAAGAGGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721998       <-- AGACAAGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus var. oleiformis
FD951457       <-- AGACAGGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Rat-Tail Radish #3870
FD936045       <-- AGACAAGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus var. oleiformis
FD945669       <-- AGACAGGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Early Scarlet Globe
FD944297       <-- AGACAGGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Early Scarlet Globe
FD574456       <-- AGACAGCCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Early Scarlet Globe
EV535741       --> AGACAGTCGGTTG-AGAAGAC.............................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940085       --> ..................................................  Raphanus sativus var. oleiformis
FD535834       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY898948       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD533502       --> AGACAAGCCGTTGAAGAAGACGAGATGATGATA.................  Raphanus raphanistrum subsp. maritimus
FD570460       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW718249       --> AGACA-GCCGTTGA-G-AGACGAGATGATGATA-GCAGCAgagatgagag  Raphanus sativus var. oleiformis
FD948528       --> AGACAGGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Early Scarlet Globe
FD955385       --> AGA...............................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950129       --> AGACAGGCCGTTGAAGAAGACGAGATGATGATAAGCAGCAAGGAAGATGA  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN13877        --> GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD531413       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
EY911018       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
EW721998       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD951457       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD936045       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD945669       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD944297       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
FD574456       <-- GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> gag...............................................
FD948528       --> GGAGGAAGTGATTGGCTGTTCCA...........................
FD955385       --> ..................................................
FD950129       --> GGAGGAAGTGATTGGCTGTTCCATGGAGATTGATGGGAATCTGATCAGTA

               901    -    951
UN13877        --> CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- CGACTTCGTTTGATGAGTACTTAACATGTGACTTTACTCCTTCGGATACA
FD531413       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTTACTCCTTCGGATACA
EY911018       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
EW721998       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTCCGGATACA
FD951457       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
FD936045       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTCCGGATACA
FD945669       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
FD944297       <-- CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
FD574456       <-- CGACTTTGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> CGACTTCGTTTGATGAGTACTTAACGTGTGACTTCACTCCTACGGATACA

               951    -   1001
UN13877        --> ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ACTGGCTTCGTGTCCGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus raphanistrum subsp. maritimus
FD531413       <-- ACTGGCTTCGTGTCCGCTTTTGATGACTACTCATT-AGTCGAGCCATATG  Raphanus raphanistrum subsp. maritimus
EY911018       <-- ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721998       <-- ACTGGCTTCGTGTCCGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus sativus var. oleiformis
FD951457       <-- ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus sativus cv Rat-Tail Radish #3870
FD936045       <-- ACTGGCTTCGTGTCCGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus sativus var. oleiformis
FD945669       <-- ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTAT.  Raphanus sativus cv Early Scarlet Globe
FD944297       <-- ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus sativus cv Early Scarlet Globe
FD574456       <-- ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATT-AGTCGAGCCGTATG  Raphanus sativus cv Early Scarlet Globe
EV535741       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940085       --> ..................................................  Raphanus sativus var. oleiformis
FD535834       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY898948       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD533502       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD570460       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW718249       --> ..................................................  Raphanus sativus var. oleiformis
FD948528       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD955385       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950129       --> ACTGGCTTCGTGTCTGCTTTTGATGACTACTCATTGAGTCGAGCCGTATG  Raphanus sativus cv Early Scarlet Globe

               1001   -   1051
UN13877        --> ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
FD531413       <-- ATCTATATCAATTTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
EY911018       <-- ATCTATATCAATCTGATTTCTATCATGAGACCACTGATGATCAACTTGAC
EW721998       <-- ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
FD951457       <-- ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
FD936045       <-- ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
FD945669       <-- ..................................................
FD944297       <-- ATCTATATCAATCTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
FD574456       <-- ATCTATATCAATTTGATTTCTATCATGAGACTACTGATGATCAACTTGAC
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ATCTATATCAATCTGATTTCTATC..........................

               1051   -   1101
UN13877        --> CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGC.......
FD531413       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTC
EY911018       <-- CTGTTCCTCCTTTGAAATTCACTCCCTTGAACAAGTTTCTTGCTTTTTCT
EW721998       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTT-
FD951457       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTC
FD936045       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTT
FD945669       <-- ..................................................
FD944297       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTC
FD574456       <-- CTGTTCCTCCTTTGAAATTCACTCTCTTGAACAAGTTTCTTGCTTTTTTC
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               1101   -   1151
UN13877        --> TTTTTTTTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- TTTTTTTTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
EY911018       <-- TTTTTTTTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGTATCTC
EW721998       <-- TCTTTTTTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
FD951457       <-- TTTTTTTTT-GTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
FD936045       <-- CTTTTTTTTTGTATCCGTTAG---TTTGTGACGAAAGAGAGAGGT-----
FD945669       <-- ..................................................
FD944297       <-- TTTTTTTTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
FD574456       <-- T-----TTTTGTATCCGTTAGTTCAGTGTGACGAAAGAGAGAGGT-----
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               1151   -   1201
UN13877        --> --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTGTGAGTGACATGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD531413       <-- --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTGTGAGTGACATGTATG  Raphanus raphanistrum subsp. maritimus
EY911018       <-- CGTATCTGAAAAAGGGCAAGTACTCATCAGTACTGTGAGTGACATGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW721998       <-- --T-TCTG-AAAGGGGCAAGTACTCATCAGTACTGTGAGTGACATGTATG  Raphanus sativus var. oleiformis
FD951457       <-- --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTATGAGTGACATGTATG  Raphanus sativus cv Rat-Tail Radish #3870
FD936045       <-- --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTGTGAGTGACATGTATG  Raphanus sativus var. oleiformis
FD945669       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD944297       <-- --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTATGAGTGACATGTATG  Raphanus sativus cv Early Scarlet Globe
FD574456       <-- --T-TCTG-AAAAGGGCAAGTACTCATCAGTACTATGAGTGACATGTATG  Raphanus sativus cv Early Scarlet Globe
EV535741       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940085       --> ..................................................  Raphanus sativus var. oleiformis
FD535834       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY898948       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD533502       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD570460       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW718249       --> ..................................................  Raphanus sativus var. oleiformis
FD948528       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD955385       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD950129       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1201   -   1251
UN13877        --> GTCAATGTTTCTGTGTTTTGACTGTTAACTTCCCTTTTTTTTTAAGTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- GTCAATGTTTCTGTGTTTTGACTGTT........................
EY911018       <-- GTCAATGTTTCTGTGTTTTGACTGTTAACAGCCCTTTTTTTTTAAGTC..
EW721998       <-- GTCAATGTTTCTGTGTTTTGACTGTTAACAGCCCTTTTTCTTTAAGTCGA
FD951457       <-- GTCAATGTTTCTGTGTTTTGACTGTTAACTTCCCTTTTTTTT........
FD936045       <-- GTCAATGTTTCTGTGTTTTGACTGTTAACa....................
FD945669       <-- ..................................................
FD944297       <-- GTCAATGTTTCTGTGTTTTGACTGgc........................
FD574456       <-- GTCAATGTTTCTGTGTTTTGACTGTTAACTTCCCTTTTTTTT........
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               1251   -   1301
UN13877        --> TTACCTCTGTCTCTTAGAGCAGCTGCAATGGTGAACTTCACCAATGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD529668       <-- ..................................................
FD531413       <-- ..................................................
EY911018       <-- ..................................................
EW721998       <-- TTACCTCTGTCTCTTAGAGCAGCTGCAATGGTGAACTTCACCAATGAATC
FD951457       <-- ..................................................
FD936045       <-- ..................................................
FD945669       <-- ..................................................
FD944297       <-- ..................................................
FD574456       <-- ..................................................
EV535741       --> ..................................................
FD940085       --> ..................................................
FD535834       --> ..................................................
EY898948       --> ..................................................
FD533502       --> ..................................................
FD570460       --> ..................................................
EW718249       --> ..................................................
FD948528       --> ..................................................
FD955385       --> ..................................................
FD950129       --> ..................................................

               1301   -   1351
UN13877        --> CTTAGCAATAAG
                   ~~~~~~~~~~~~
FD529668       <-- ............
FD531413       <-- ............
EY911018       <-- ............
EW721998       <-- CTTAGCAATAAG
FD951457       <-- ............
FD936045       <-- ............
FD945669       <-- ............
FD944297       <-- ............
FD574456       <-- ............
EV535741       --> ............
FD940085       --> ............
FD535834       --> ............
EY898948       --> ............
FD533502       --> ............
FD570460       --> ............
EW718249       --> ............
FD948528       --> ............
FD955385       --> ............
FD950129       --> ............