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Alignment for radish unigene UN13902

               1      -     51
UN13902        --> AGATGCAGACATGACTCTTCTTATTGCAATCACATGTTCATATATGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- AGATGCAGACATGACTCTTCTTATTGCAATCACATGTTCATATATGTATG
FD948368       <-- ................................ttttTTCATATATGTATG
EY905107       <-- ........................................TATATGTATG
EX763749       <-- .........................................ATATGTATG
EX754748       <-- ..................................................
EY908892       <-- ..................................................
EY930402       <-- ..................................................
EY939871       <-- ..................................................
EX772361       <-- ..................................................
FD948863       <-- ..................................................
EY926614       --> ......................................CATATATGTATG
FD944167       --> ......................................CATATATGTATG
EY935727       --> .................................................G
FD944589       --> .................................................G
EX759008       --> ..................................................
EY904512       --> ..................................................
EX776333       --> ..................................................

               51     -    101
UN13902        --> ATTTTATTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- ATTTTATTCGATCAGATCATTTTACAGTACTCTATCAAATGTTCAGAGAC  Raphanus sativus var. oleiformis
FD948368       <-- ATTTT-TTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- ATTT-ATTCGATCAGATCATTT-ACGTTACTCTATCAAATGTTCAGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- ATTTTATTCGATCAGATCATTTTACAGTACTCTATCAAATGTTCAGAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- ..TTTTTTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- ........CGATCAGATCATTTTACATTACTCTATCAAATGT-CAGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- ........CGATCAGATCATTT-ACAGTACTCTATCAAATGTTCAGAGAC  Raphanus sativus var. oleiformis
EY939871       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD948863       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926614       --> ATTTTATTCGATCAGATCATTTTACAGTACTCTATCAAATGTTCAGAGAC  Raphanus sativus var. oleiformis
FD944167       --> ATTTTATTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus sativus cv Early Scarlet Globe
EY935727       --> ATTTTATTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus sativus cv Early Scarlet Globe
FD944589       --> ATTTTATTCGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus sativus cv Early Scarlet Globe
EX759008       --> ........CGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> ........CGATCAGATCATTTTACATTACTCTATCAAATGTTCAGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> ...........................................CAGAGAC  Raphanus raphanistrum subsp. landra

               101    -    151
UN13902        --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus sativus var. oleiformis
FD948368       <-- GACACTTT-ATTCGATCGGATCGTTCACATTATCGGCATTGCAACCATAC  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATCGCAGCCACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- GGCACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATCGCAGCCACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- GACACCTTTATTCGATCGGATCGTTTACATTATCGGCATCGCAGCCACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus sativus var. oleiformis
EY939871       <-- ...........TCGATCGGATCGTT-ACATTATCGGCATTGCAACCATAC  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- ..............................TATCGGCATTGCAACCATAC  Raphanus raphanistrum subsp. landra
FD948863       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus sativus var. oleiformis
FD944167       --> GACACTTTTATTCGATCGGATCGTTCACATTATCGGCATTGCAACCATAC  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus sativus cv Early Scarlet Globe
EX759008       --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATCGCAGCCACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> GACACCTTTATTCGATCGGATCGTTTACATTATCGGCATCGCAGCCACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> GACACTTTTATTCGATCGGATCGTTTACATTATCGGCATTGCAACCATAC  Raphanus raphanistrum subsp. landra

               151    -    201
UN13902        --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus var. oleiformis
FD948368       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- ATTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- ATTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- ATTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus var. oleiformis
EY939871       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATC-TAGGAGAGA  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- GTTAACACAAATCTCCCACACATTGATTTACAACACGATCGTAGGAGAGA  Raphanus raphanistrum subsp. landra
FD948863       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus var. oleiformis
FD944167       --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus sativus cv Early Scarlet Globe
EX759008       --> ATTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> ATTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> GTTAACACAAATCTCCCACACATTGATTTACAACACGATCCTAGGAGAGA  Raphanus raphanistrum subsp. landra

               201    -    251
UN13902        --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCAGGCAGTT
FD948368       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY905107       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EX763749       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EX754748       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY908892       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY930402       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY939871       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EX772361       <-- CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
FD948863       <-- ..................................................
EY926614       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
FD944167       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY935727       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
FD944589       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EX759008       --> CTCTTCCGGATCTCAAACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EY904512       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAGAAACCTGGCAGTT
EX776333       --> CTCTTCCGGATCTCAGACCCGACCCTACCGATAGGAAAAACCTGGCAGTT

               251    -    301
UN13902        --> GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus sativus var. oleiformis
FD948368       <-- GTTCCGCACGGCAGTGAGATTATAAGGCGGCGTATCGGTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus sativus var. oleiformis
EY939871       <-- GTTCCGCACGGCAGTGAGATTATAAGGCGGCGTATCGGTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus raphanistrum subsp. landra
FD948863       <-- .....................................GTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus sativus var. oleiformis
FD944167       --> GTTCCGCACGGCAGTGAGATTATAAGGCGGCGTATCGGTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GTTCCGCACGGCAGTGAGATTATAAGGCGGCGTATCGGTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GTTCCGCACGGCAGTGAGATTATAAGGCGGCGTATCGGTCGCAAGCCATT  Raphanus sativus cv Early Scarlet Globe
EX759008       --> GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCGGTCGCAAGCCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> GTTCCGCACGGCAGTGAGATTATACGGCGGCGTATCAGTCGCAAGCCATT  Raphanus raphanistrum subsp. landra

               301    -    351
UN13902        --> GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus sativus var. oleiformis
FD948368       <-- GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- GCTCCACATCAAAGTATTGATGTTCACTCTTTAAATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- GCTCCACATCAAAGTATTGATGTTCACTCTTTAAATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- GCTCCACATCAAAGTATTGATGTTCACTCTTTAAATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus sativus var. oleiformis
EY939871       <-- GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus raphanistrum subsp. landra
FD948863       <-- GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus sativus var. oleiformis
FD944167       --> GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GCTCCACATCAAAGTATTGATGTTCACTTTTTAAATGAACACTGACCGTC  Raphanus sativus cv Early Scarlet Globe
EX759008       --> GCTCCACATCAAAGTATTGATGTTCACTCTTTAAATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> GCTCCACATCAAAGTATTGATGTTCACTCTTTAAATGAACACTGACCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> GCTCCACATTGAAGTATTGATGTTCACTCTTAAGATGAACACTGACCGTC  Raphanus raphanistrum subsp. landra

               351    -    401
UN13902        --> GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus sativus var. oleiformis
FD948368       <-- GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAATCGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAATCGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAATCGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus sativus var. oleiformis
EY939871       <-- GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus raphanistrum subsp. landra
FD948863       <-- GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus sativus var. oleiformis
FD944167       --> GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GTGACGTCCACGTAGTTGACAAACCAGGCGGGGTAAACGCCGGAGCCGTC  Raphanus sativus cv Early Scarlet Globe
EX759008       --> GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAATCGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAATCGCCGGAGCCGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> GTGACGTCCACGTAGTTAACAAACCAGGCCGGGTAAACGCCGGAGCCGTC  Raphanus raphanistrum subsp. landra

               401    -    451
UN13902        --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus var. oleiformis
FD948368       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- TGAGGTCAGACTCAGTGAACAGACTAGGCTAGGAAGACACTGCGCCTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- TGAGGTCAGACTCAGTGAACAGACTAGGCTAGGAAGACACTGCGCCTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- TGAGGTCAGACTCAGTGAACAGACTAGGCTAGGAAGACACTGCGCCTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus var. oleiformis
EY939871       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus raphanistrum subsp. landra
FD948863       <-- TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
EY926614       --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus var. oleiformis
FD944167       --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
EY935727       --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
FD944589       --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus sativus cv Early Scarlet Globe
EX759008       --> TGAGGTCAAACTCAGTGAACAGACTAGGCTAGGAAGACACTGCGCCTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> TGAGGTCAGACTCAGTGAACAGACTAGGCTAGGAAGACACTGCGCCTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> TGAGGTCAGACTCAGTGAACAGACTGGGCTCGGAAGACACTGCGCTTTAC  Raphanus raphanistrum subsp. landra

               451    -    501
UN13902        --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
FD948368       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY905107       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EX763749       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EX754748       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY908892       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY930402       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY939871       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EX772361       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
FD948863       <-- CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY926614       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
FD944167       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY935727       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
FD944589       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EX759008       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EY904512       --> CACTGAAAATGTCCAAATTGCCTCTCTCGAAGTAGTCGTAACTTGGTCCC
EX776333       --> CACTGAAAATGTCCAAATTGCCTCTCTC......................

               501    -    551
UN13902        --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATACCAATGTCCTGTCCCGA
FD948368       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY905107       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EX763749       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EX754748       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY908892       <-- ATTGACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY930402       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY939871       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EX772361       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
FD948863       <-- ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY926614       --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
FD944167       --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY935727       --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
FD944589       --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EX759008       --> ATTAACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EY904512       --> ATTGACCCACCCCATGTCACTATGTCTGGGATATCAATGTCCTGTCCCGA
EX776333       --> ..................................................

               551    -    601
UN13902        --> ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- ATTGTCCGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus var. oleiformis
FD948368       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- ATTGTCCGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- ATTGTCCGAGATTTTAACGCTTATGAT--AATCTGTGCCGGCATTTTCCA  Raphanus sativus var. oleiformis
EY939871       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- ATTGTCCGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. landra
FD948863       <-- ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
EY926614       --> ATTGTCCGAGATTTTAACGCTTATGATA--ATCTGTGCCGGCATTTTCCA  Raphanus sativus var. oleiformis
FD944167       --> ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
EY935727       --> ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
FD944589       --> ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus sativus cv Early Scarlet Globe
EX759008       --> ATTGTCGGAAATTTTAACGCTTATGATAAAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> ATTGTCGGAGATTTTAACGCTTATGATAGAATCTGTGCCGGCATTTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> ..................................................  Raphanus raphanistrum subsp. landra

               601    -    651
UN13902        --> CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- CCGGTCC-ATTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus var. oleiformis
FD948368       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- CCGGTCCAGTTTCGATGTAGAATGTGTAGACGCAGTGTG...........  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- CCGGTCCAGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus var. oleiformis
EY939871       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- CCGGTCCAGTTTCGATGTAGAATGCGTAGACGCAGTGTGGTTCACGGTCG  Raphanus raphanistrum subsp. landra
FD948863       <-- CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
EY926614       --> CCGGTCCAGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus var. oleiformis
FD944167       --> CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
EY935727       --> CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
FD944589       --> CCGGTCCGGTTTCGATGTAGAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus sativus cv Early Scarlet Globe
EX759008       --> CCGGTCCGGTTTCGATGTAAAATGTGTAGACGCAGTGTGGTTCACGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> CCGGTCCGGTTTCGATGTAGAATGTGTAGACGC.................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN13902        --> GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAGGGAGAGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- GCGAATGCAACGACAGAAAGGGTGAT---GACGAGGAGGGAGAGGAGGAG  Raphanus sativus var. oleiformis
FD948368       <-- GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAAGGAGAGGAGGAG  Raphanus sativus cv Early Scarlet Globe
EY905107       <-- GCGAATGCAACGACAGATAGGGTGATGATGACGAGGAGGGAGAGGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754748       <-- GCGAATGCAACGACAGATAGGGTGATGATGACGGGGAGGGAGAGGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908892       <-- GCGAATGCATCGACAGATAGGGTGATGATGACGAGGAGGGAGAGGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930402       <-- GCGAATGCAACGACAGAAAGGGTGAT---GACGAGGAGGGAGAGGAGGAG  Raphanus sativus var. oleiformis
EY939871       <-- GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAAGGAGAGGAGGAG  Raphanus sativus cv Early Scarlet Globe
EX772361       <-- GCGAATGCAACGACAGAAAGGGTGAT---GACGAGGAGGGAGAGGAGGAG  Raphanus raphanistrum subsp. landra
FD948863       <-- GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAAGGAGAGGAGGAG  Raphanus sativus cv Early Scarlet Globe
EY926614       --> GCGAATGCAACGACAGAAAGGGTGATGA---CGAGGAGGGAGAGGAGGAG  Raphanus sativus var. oleiformis
FD944167       --> GCGAATGCAACGACAGAAAGGGTGATGATGA...................  Raphanus sativus cv Early Scarlet Globe
EY935727       --> GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAAGGAGAGGAGGAG  Raphanus sativus cv Early Scarlet Globe
FD944589       --> GCGAATGCAACGACAGAAAGGGTGATGATGACGAGGAAGGAGAGGAGGAG  Raphanus sativus cv Early Scarlet Globe
EX759008       --> GCGAATGCAACGACAGATAGGGTGATGATGACGGGGAGGGAGAGGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904512       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776333       --> ..................................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN13902        --> AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCCGAAAATGGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTAAGAAAATcc....
FD948368       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTAAGAAAATGGACAA
EY905107       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCC............
EX763749       <-- ..................................................
EX754748       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTaag...........
EY908892       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATcc..............
EY930402       <-- AACGTCACGACCAGCCATAGTTGGTGATATGAATGTCC............
EY939871       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCC............
EX772361       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCC............
FD948863       <-- AACGTCACGGCCAGCCATAGTTGGTGATATGAATGT..............
EY926614       --> AACGTCACGACCAGCCATAGTTGGT.........................
FD944167       --> ..................................................
EY935727       --> AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTCC............
FD944589       --> AACGTCACGGCCAGCCATAGTTGGTGATATGAAT................
EX759008       --> AACGTCACGGCCAGCCATAGTTGGTGATATGAATGTAAGAAAATcc....
EY904512       --> ..................................................
EX776333       --> ..................................................

               751    -    801
UN13902        --> CTAATATGTCCCACCTACTAATATAGTTTGAGACTTGGGAAGCGCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888202       <-- ..................................................
FD948368       <-- CTAATATGTCCCACCTACTAATATAGTTTGAGACTTGGGAAGCGCAGATA
EY905107       <-- ..................................................
EX763749       <-- ..................................................
EX754748       <-- ..................................................
EY908892       <-- ..................................................
EY930402       <-- ..................................................
EY939871       <-- ..................................................
EX772361       <-- ..................................................
FD948863       <-- ..................................................
EY926614       --> ..................................................
FD944167       --> ..................................................
EY935727       --> ..................................................
FD944589       --> ..................................................
EX759008       --> ..................................................
EY904512       --> ..................................................
EX776333       --> ..................................................

               801    -    851
UN13902        --> AAAA
                   ~~~~
EX888202       <-- ....
FD948368       <-- AAAA
EY905107       <-- ....
EX763749       <-- ....
EX754748       <-- ....
EY908892       <-- ....
EY930402       <-- ....
EY939871       <-- ....
EX772361       <-- ....
FD948863       <-- ....
EY926614       --> ....
FD944167       --> ....
EY935727       --> ....
FD944589       --> ....
EX759008       --> ....
EY904512       --> ....
EX776333       --> ....