Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN13939

               1      -     51
UN13939        --> GAGGTTGTAGATCTCTAAATTCTTATTATAACCAATTGCTAGGTGATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ...........TCTCTAAATTCTTATTATAACCAATTGCTAGGTGATAAA
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> GAGGTTGTAGATCTCTAAATTCTTATTATAACCAATTGCTAGGTGATAAA
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               51     -    101
UN13939        --> AAAAAACAACTTTTTCGGCAAAGTGTGATGTGATAAACAACGTTCTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- AAAAAACAACTTTTTCGGCAAAGTGTGATGTGATAAACAACGTTCTTCTA
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> AAAAAACAACTTTTTCGGCAAAGTGTGATGTGATAAACAACGTTCTTCTA
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               101    -    151
UN13939        --> ACACAAGTAACAATGTTCTCATAGCAGGAGTAGTAGATGGTTTTGTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ACACAAGTAACAATGTTCTCATAGCAGGAGTAGTAGATGGTTTTGTCACA
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ACACAAGTAACAATGTTCTCATAGCAGGAGTAGTAGATGGTTTTGTCACA
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               151    -    201
UN13939        --> GTAGAAGTGTAATGCTCCTCTAGTTAGTTAGGACTAATCTTGATTGGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- GTAGAAGTGTAATGCTCCTCTAGTTAGTTAGGACTAATCTTGATTGGGGG
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> GTAAAAGTGTAATGCTCCTCTAGTTAGTTAGGACTAATCTTGATTGGGGG
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               201    -    251
UN13939        --> GGGAAAGAAACAAAAACCATCAGGTGAAGAAAGAAGAGATGTATGTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- GGGAAAGAAACAAAAACCATCAGGTGAAGAAAGAAGAGATGTATGTAATT
FY437030       <-- ..............AACCATCAGGTGAAGAAAGAAGAGATGTATGTAATT
FY438448       <-- ..............AACCATCAGGTGAAGAAAGAAGAGATGTATGTAATT
EX748675       <-- ..........................agttagGAAGAGATGTATGTAATT
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> GGGAAAGAAACAAAAACCATCAGGTGAAGAAAGAAGAAATGTATGTAATT
EX906506       --> .........................GAAGAAAGAAGAGATGTATGTAATT
FY430342       --> ..........................gAGAAA-AAGAGATGTATGTAATT
EX752542       --> ..........................agttagGAAGAGATGTATGTAATT
FD553513       --> ..................................................
EW728163       --> ..................................................

               251    -    301
UN13939        --> AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTA-------CCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTAGTCATTACCAT
FY437030       <-- AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTA-------CCAT
FY438448       <-- AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTA-------CCAT
EX748675       <-- AATTTTGTCGCGTGTACGTATATAGACACAATCTCATTA-------CCAT
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTAGTCATTACCAT
EX906506       --> AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTA-------CCAT
FY430342       --> AATTTTGTCGTGTGTACGTATATAGACACAATCTCATTA-------CCAT
EX752542       --> AATTTTGTCGCGTGTACGTATATAGACACAATCTCATTA-------CCAT
FD553513       --> ..............cACGTATATAGACACAATCTCATTA-------CCAT
EW728163       --> ...................tTATAGACACAATCTCATTA-------CCAT

               301    -    351
UN13939        --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
FY437030       <-- AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
FY438448       <-- AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
EX748675       <-- AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
FY430354       <-- ..................................................
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
EX906506       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
FY430342       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
EX752542       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
FD553513       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG
EW728163       --> AAATAGACAAGAAGCTCAGGTTTTGGGGGTATATTGGGTATCATTCCATG

               351    -    401
UN13939        --> AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus var. oleiformis
FY437030       <-- AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus cv GSK3-1
FY438448       <-- AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus cv GSK3-1
EX748675       <-- AACCCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGACGCT  Raphanus raphanistrum subsp. maritimus
FY430354       <-- .....................................GACATGTGAGGCT  Raphanus sativus cv GSK3-1
FD557413       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW723149       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX902179       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX892578       --> AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus var. oleiformis
EX906506       --> AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus cv Rat-Tail Radish #3870
FY430342       --> AACTCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGAGGCT  Raphanus sativus cv GSK3-1
EX752542       --> AACCCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGACGCT  Raphanus raphanistrum subsp. maritimus
FD553513       --> AACCCCACCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGACGCT  Raphanus raphanistrum subsp. landra
EW728163       --> AACCCCAGCATTTAGCATGGGGGCTCCACTTGGTGTTGACATGTGACGCT  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN13939        --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCGAAGACTTTGGC
FY437030       <-- TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
FY438448       <-- TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
EX748675       <-- TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
FY430354       <-- TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCGAAGACTTTGGC
EX906506       --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
FY430342       --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
EX752542       --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC
FD553513       --> TTGTAGCGTTTCCAGTCACGAAAAACAAAAGTGAGATCAAAAACTTTGGC
EW728163       --> TTGTAGCGTTTCCAGTCACGAAGAACAAGAGTGAGATCAAAGACTTTGGC

               451    -    501
UN13939        --> AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
FY437030       <-- AGAGATGTGACGGCAGCAG...............................
FY438448       <-- AGAGA.............................................
EX748675       <-- AGAGATGTGACGGCAGCAGTTGGCATGAACGGTGGTGACAGCGCCCATGT
FY430354       <-- AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> AGAAATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
EX906506       --> AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
FY430342       --> AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
EX752542       --> AGAGATGTGACGGCAGCAGTTGGCATGAACGGTGGTGACAGCGCCCATGT
FD553513       --> AAAAATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCGCCCATGT
EW728163       --> AGAGATGTGACGGCAGCAGTTGGCGTGAACGGTGGTGACAGCTCCCATGT

               501    -    551
UN13939        --> CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAACCA
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- CAGTGCTATCTTGGCAGAAACCGCT.........................
FY430354       <-- CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> CAGTGCTATCTTGGCAGAAACCGCTGA.......................
EX906506       --> CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
FY430342       --> CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
EX752542       --> CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
FD553513       --> CAGTGCTATCTTGGCAAAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA
EW728163       --> CAGTGCTATCTTGGCAGAAACCGCTGAAGTGGGTGGTGCTGAGGAAGCCA

               551    -    601
UN13939        --> ACAGTGAGACCGAGCTGGTTGAAGAAACCTGAGTCGAGAAGCTTCTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ACAGTGAGACCGAGCTGGTTGAAGAAACCAGAGTCGAGGAGCTTCTTGAG
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ACAGTGAGACCGAGCTGGTTGAAGAAACCTGAGTCGAGAAGCTTCTTGAG
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> ACAGTGAGACCGAGCTGGTTGAAGAAACCTGAGTCGAGAAGCTTCTTGAG
FY430342       --> ACAGTGAGACCGAGCTGGTTGAAGAAACCTGAGTCGAGAAGCTTCTTGAG
EX752542       --> ACAGTGAGACCGAGCTGc................................
FD553513       --> ACAGTGAGACCGAGCTGGTTGAAAAAACCTGAGTCGAGAAGCTTCTTGAG
EW728163       --> ACAGTGAGACCGAGCTGGTTGAAGAAACCTGAGTCGAGAAGCTTCTTGAG

               601    -    651
UN13939        --> GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> GACGTCTTGTTCCTTCATGCCCGAGGAGTTGAGTCTCATGTCGTACCATT
FY430342       --> GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT
EX752542       --> ..................................................
FD553513       --> GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT
EW728163       --> GACGTCTTGTTCCTTCATGCCCGTGGAGTTGAGTCTCATGTCGTACCATT

               651    -    701
UN13939        --> TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAGTAGAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- TTTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAc.........
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAGTAGAAGCCA
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAGTAGAAGCCA
FY430342       --> TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAGTAGAAGCCA
EX752542       --> ..................................................
FD553513       --> TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGG...............
EW728163       --> TCTGGAAAAGAGAGATGGTCCTATTGTTGGAACGGACGTAGTAGAAGCCA

               701    -    751
UN13939        --> GTGTTTACCAAGTGTCCTCCTATGCCGCTGTCCACACTTATCTGCATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- GTGTTTACCAAGTGTCCTCCTATGCCGCTGTCCACACTTATCTGCATATC
FD557413       <-- ..................................................
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> GTGTTTACCAAGTGTCCTCCTATGCCGCTGTCCACACTTATCTGCATATC
FY430342       --> GTGTTTACCAAGTGTCCTCCTATGCCGCTGTCCACACTTATCTGCATATC
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> GTGTTTACCAAGTGTCCTCCTATGCCGCTGTCCACACTTATCTGCATATC

               751    -    801
UN13939        --> CAGGGTCCCGTTGTTGCTTAGCCGGGAGAAGGGGTTCCTTAGCCACATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- CAGGGTCCCGTTGTTGCTTAGCCGGGAGAAGGGGTTCCTTAGCCACATCA
FD557413       <-- ..........................................CCACATCA
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> CAGGGTCCCGTTGTTGCTTAGCCGGGAGAAGGGGTTCCTTAGCCACATCA
FY430342       --> CAGGGTCCCGTTGTTGCTTAGCCGGGAGAAGGGGTTCCTTAGCCACATCA
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> CAGGGTCCCGTTCTTGCTTAGCCGAGAGAAGGGGTTCCTTAGCCACATCA

               801    -    851
UN13939        --> CATCAGTGTCCGTGAAAATGAGATGGTAGCCACGGCGGAGGACGTCTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- CATCAGTGTCCGTGAAAATGAGATGGTAGCCACGGCGGAGGACGTCTAGG
FD557413       <-- CATCAGTGTCCGTGAAAATGGGATGGTAGCCACGGCGGAGGACGTCTAGG
EW723149       <-- ..................................................
EX902179       <-- ..................................................
EX892578       --> ..................................................
EX906506       --> CATCAGTGTCCGTGAAAATGAGATGGTAGCCACGGCGGAGGACGTCTAGG
FY430342       --> CATCAGTGTCCGTGAAAATGAGATGGTAGCCACGGCGGAGGACGTCTAGG
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> CATCAGTGTCCGTGAAAATGAGATGGTAGCCACGGCGGAGGACGTCTAGG

               851    -    901
UN13939        --> AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA
FD557413       <-- AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA
EW723149       <-- ................................GAAATCGTTTGACATGTA
EX902179       <-- ................................GAAATCGTTTGACATGTA
EX892578       --> ..................................................
EX906506       --> AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA
FY430342       --> AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> AGCAATTGAGTCCTCCGCCACATCATCTCAATGAAATCGTTTGACATGTA

               901    -    951
UN13939        --> GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
FD557413       <-- GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
EW723149       <-- GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
EX902179       <-- GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
EX892578       --> ..................................................
EX906506       --> GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
FY430342       --> GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> GACTTTCTCTCCCTGCAAGTCAACTCCCTCTGTCTCCATCTTGTAGCAGT

               951    -   1001
UN13939        --> GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
FD557413       <-- GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
EW723149       <-- GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
EX902179       <-- GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
EX892578       --> ..................................................
EX906506       --> GTAGCCTCCTGAAGCGGCAGCGATC.........................
FY430342       --> GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> GTAGCCTCCTGAAGCGGCAGCGATCGTAGGCCGTCTGATCCGCTGCCACC

               1001   -   1051
UN13939        --> ACCATCAGATGGTCCAGAAGTGACACAGTACCCTCTCCTTCCCAGAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ACCATCAGATGGTCCAGAAGTGACACGGTACCCTCTCCTTCCCATAAACT
FD557413       <-- ACCATCAGATGGTCCAGAAGTGACACAGTACCCTCTCCTTCCCAGAAACT
EW723149       <-- ACCATCAGATGGTCCAGAAGTGACACAGTACCCTCTCCTTCCCAGAAACT
EX902179       <-- ACCATCAGATGGTCCAGAAGTGACACGGTACCCTCTCCTTCCCATAAACT
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ACCATC............................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ACCATCAGATGGTCCAGAAGTGACACAGTACCCTCTCCTTCCCAGAAACT

               1051   -   1101
UN13939        --> CTCTAGGAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- CTCTAGAAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT
FD557413       <-- CTCTAGGAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT
EW723149       <-- CTCTAGGAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT
EX902179       <-- CTCTAGAAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> CTCTAGGAACAGATCCAACATCGTCCTCCCTCCTTCAACCTCCTCCACAT

               1101   -   1151
UN13939        --> ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCTATTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCTATTGCC
FD557413       <-- ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCTATAGCC
EW723149       <-- ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCTATTGCC
EX902179       <-- ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCTATTGCC
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ACGCTTTGTTCACCATCGTTATTATCACCGTCTTGTTGTTTCCT......

               1151   -   1201
UN13939        --> GCACTGTCCAGCGCCGACTCTAGCTCGTTCACCGGTAACTTGATCGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- GCACTGTCCAGTGCCGACTCTAGCTCGTTCACCGGTAACTTGATCGTTCT
FD557413       <-- GCACTGTCCAGCGCCGACTCTAGCTCGTCCACCGGTAACTTGATCGTTCT
EW723149       <-- GCACTGTCCAGCGCCGACTCTAGCTCGTCCACCGGTAACTTGATCGTTCT
EX902179       <-- GCACTGTCCAGCGCCGACTCTAGCTCGTTCACCGGTAACTTGATCGTTCT
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               1201   -   1251
UN13939        --> CAGAGGGTTACCAATGTGTTCTAGACCGGAGATAGGATCAGAGATCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- CAGAGGGTTACCAATGTGTCCTAGACCGGAGATAGGATCAGAGATCAAAC
FD557413       <-- CAGAGGGTCACCAATGTGTTCGAGACCGGAGATAGGATCAGAGATCAAAC
EW723149       <-- CAGAGGGTCACCAATGTGTTCGAGACCGGAGATA................
EX902179       <-- CAGAGGGTTACCAATGTGTCCTAGACCGGAGATAGGATCAGAGATCAAAC
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               1251   -   1301
UN13939        --> GTGAGGAGAAGCAGACATATAGAGCGCCGACAAAGAGGAGAGCAACGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- GTGAGGAGAAGCAGACATATAGAGCGCCGACAAAGAGGAGAGCAACGGCC
EW723149       <-- ..................................................
EX902179       <-- GTGAGGAGAAGCAGACATATAGAGCGCCGACAAAGAGGAGAGCAACGGCC
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               1301   -   1351
UN13939        --> ACAACGAGATTTCCGGAAGAGTAATTGGAGATAAACATGTGTGTTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ACAACGAGATTTCCGGAAGAGTAATTGGAGATAAACATGTGTGTTTTATT
EW723149       <-- ..................................................
EX902179       <-- ACAACGAGATTTCCGGAAGAGGAATTGGAGATAAACATGTGTGTTTTATT
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               1351   -   1401
UN13939        --> ATATGTTAGATTAATTCAAAGAAAGATAGCCTGCTTTTACATTAGGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ..................................................
FY437030       <-- ..................................................
FY438448       <-- ..................................................
EX748675       <-- ..................................................
FY430354       <-- ..................................................
FD557413       <-- ATATGTTAGATTAATTCAAAGAAAGATAGCCTGCTTTTACATTAGGTGTA
EW723149       <-- ..................................................
EX902179       <-- ATATGTTAGATTAATTCcc...............................
EX892578       --> ..................................................
EX906506       --> ..................................................
FY430342       --> ..................................................
EX752542       --> ..................................................
FD553513       --> ..................................................
EW728163       --> ..................................................

               1401   -   1451
UN13939        --> TATATAGAGCATGGAAATTTTGGAACTTTTAAGTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX888680       <-- ......................................
FY437030       <-- ......................................
FY438448       <-- ......................................
EX748675       <-- ......................................
FY430354       <-- ......................................
FD557413       <-- TATATAGAGCATGGAAATTTTGGAACTTTTAAGTTTCC
EW723149       <-- ......................................
EX902179       <-- ......................................
EX892578       --> ......................................
EX906506       --> ......................................
FY430342       --> ......................................
EX752542       --> ......................................
FD553513       --> ......................................
EW728163       --> ......................................