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Alignment for radish unigene UN13952

               1      -     51
UN13952        --> GGTAGAGAAAATAAATAATCGATACAACACCGCAGGATAATGTAATTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- ............................................tttgGA
FD979740       <-- ..................................................
EW714294       <-- ..................................................
EX889551       <-- ..................................................
EX887844       <-- ..................................................
EX748175       <-- ..................................................
EX761860       <-- ..................................................
FD946557       <-- ..................................................
EX893253       --> GGTAGAGAAAATAAATAATCGATACAACACCGCAGGATAATGTAATTTGA
EX891893       --> ....GAGAAAATAAATAATCGATACAACACCGCAGGATAATGTAATTTGA
FD959971       --> .....................................cAATGTAATTGGA
FD976115       --> ...............................................gGA
EX766250       --> ..................................................
EW719049       --> ..................................................
FD975733       --> ..................................................

               51     -    101
UN13952        --> AGCTTTTCAGAACGAGATTTAGATGTCATAAGATCCACAAAGGTAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- AGCTTTTCAGAACGAGATTTAGATGTCATAAGATCCACAAAGGTAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- ..................................................  Raphanus sativus var. oleiformis
EX889551       <-- ..................................................  Raphanus sativus var. oleiformis
EX887844       <-- ..................................................  Raphanus sativus var. oleiformis
EX748175       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX761860       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893253       --> AGCTTTTCAGAACGAGATTTAGATGTCATAAGATCCA-AAAGGTAAAACA  Raphanus sativus var. oleiformis
EX891893       --> AGCTTTTCAGAACGAGATTTAGATGTCATAAGATCCA-AAAGGTAAAACA  Raphanus sativus var. oleiformis
FD959971       --> AGCTTTTCAAAACGAGATTTAGATGTCATAAGATCCACAAAGGTAAAACA  Raphanus raphanistrum subsp. maritimus
FD976115       --> AGCTTTTCAGAACGAGATTTAGATGTCATAAGATCCACAAAGGTAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> .......CAGAACGAGATTTAGATGTCATAAGATCCACAAAGGTAAA-CA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> ........gtAACGAGATTTAGATGTCATAAGATCCA-AAAGGTAAAACA  Raphanus sativus var. oleiformis
FD975733       --> .......................................AAGGTAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN13952        --> GTCTTACACATTTTTTTTTATTTGATTGAGTTTGCTTCTTCCAACTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- GTCTTACACATTTTTTTTTATTTGATTGAGTTTGCTTCTTCCAACTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- ..................................................  Raphanus sativus var. oleiformis
EX889551       <-- ..................................................  Raphanus sativus var. oleiformis
EX887844       <-- ..................................................  Raphanus sativus var. oleiformis
EX748175       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX761860       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893253       --> GTCTTACACATTTTTTATTATTTGATTGAGTTTGGTTCTTCCAACTTAAA  Raphanus sativus var. oleiformis
EX891893       --> GTCTTACACATTTTTTATTATTTGATTGAGTTTGGTTCTTCCAACTTAAA  Raphanus sativus var. oleiformis
FD959971       --> GTCTTACACATTTTTTTTTATTTGATTGAGTTTGCTTCTTCCAACTTAAA  Raphanus raphanistrum subsp. maritimus
FD976115       --> GTCTTACACATTTTTTTTTATTTGATTGAGTTTGCTTCTTCCAACTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> GTCTTACACATTTTTTTTTATTTGATTGAGTTTGCTTCTTCCAACTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> GTCTTACACATTTTTTATTATTTGATTGAGTTTGGTTCTTCCAACTTAAA  Raphanus sativus var. oleiformis
FD975733       --> GTCTTACACATTTTTTTT-ATTTGATTGAGTTTGCTTCTTCCAACTTAAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN13952        --> GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCTTCACCGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCTTCACCGAGAAA
FD979740       <-- ..............................AAAAAATCTTCACCGAGAAA
EW714294       <-- ..................................................
EX889551       <-- ..................................................
EX887844       <-- ..................................................
EX748175       <-- ..................................................
EX761860       <-- ..................................................
FD946557       <-- ..................................................
EX893253       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAA-TCTTCACCGAGAAA
EX891893       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAA-TCTTCACCGAGAAA
FD959971       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCTTCACCGAGAAA
FD976115       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCTTCACCGA-AAA
EX766250       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCCTCACCGAGAAA
EW719049       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAA-TCTTCACCGAGAAA
FD975733       --> GCTATATATACGACTCTCATAAAACCCTGAAAAAAATCTTCACCGAGAAA

               201    -    251
UN13952        --> -AA-CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- -A--CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
FD979740       <-- -A--CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
EW714294       <-- ................................TGCAGCATCACCATTTGC
EX889551       <-- .................................GCAGCATCACCATTTGC
EX887844       <-- ..................................................
EX748175       <-- ..................................................
EX761860       <-- ..................................................
FD946557       <-- ..................................................
EX893253       --> GAAGTGCAGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
EX891893       --> GAAGTGCAGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
FD959971       --> -A--CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
FD976115       --> -AA-CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
EX766250       --> -A--CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
EW719049       --> GAAGTGCAGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC
FD975733       --> -A--CGCTGCTTCATTGCCTTTAGTCCTCCTTTGCAGCATCACCATTTGC

               251    -    301
UN13952        --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
FD979740       <-- AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EW714294       <-- AACATC-TTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EX889551       <-- AACATC-TTCTTCTCCGTGATTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EX887844       <-- ............CTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EX748175       <-- ..............................TTTCTCTTCTATGCTTGTAG
EX761860       <-- ..................................................
FD946557       <-- ..................................................
EX893253       --> AACATCCTTCTTCTCCGTGATTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EX891893       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
FD959971       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
FD976115       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
EX766250       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGGTTTCTCTTCTATGCTTGTAG
EW719049       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG
FD975733       --> AACATCCTTCTTCTCCGTGGTTTCTTCCGTTTTCTCTTCTATGCTTGTAG

               301    -    351
UN13952        --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
FD979740       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTACTGCTTCTTCTCCGGTG
EW714294       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX889551       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX887844       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX748175       <-- AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX761860       <-- ................AACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
FD946557       <-- ..................................................
EX893253       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX891893       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
FD959971       --> AAGTCTCACCGTGGGCAACCGCGGA-GCTTCTTCTGCTTCTTCTCCGGTG
FD976115       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EX766250       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
EW719049       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTTCTGCTTCTTCTCCGGTG
FD975733       --> AAGTCTCACCGTGGGCAACCGCGGAAGCTTCTACTGCTTCTTCTCCGGTG

               351    -    401
UN13952        --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
FD979740       <-- TTTGTAGCGGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EW714294       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX889551       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX887844       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX748175       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX761860       <-- TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGC-TTCTCCATCACT
FD946557       <-- ...........................................CATCACT
EX893253       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX891893       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
FD959971       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
FD976115       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EX766250       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
EW719049       --> TTTGTAGCAGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT
FD975733       --> TTTGTAGCGGGTTCCGAGTCTGCTGCACTTTCTTTGCCTTCTCCATCACT

               401    -    451
UN13952        --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
FD979740       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EW714294       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX889551       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX887844       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX748175       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX761860       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
FD946557       <-- CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX893253       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX891893       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
FD959971       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
FD976115       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EX766250       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
EW719049       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC
FD975733       --> CTTCTGAATGGTCCCGACTTTGACATACTTGCTCATGAACTTGTACTCCC

               451    -    501
UN13952        --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
EX889551       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
EX887844       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
EX748175       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. maritimus
EX761860       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus sativus cv Early Scarlet Globe
EX893253       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
EX891893       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
FD959971       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. maritimus
FD976115       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAAATGTCTCCG  Raphanus sativus var. oleiformis
FD975733       --> AGTCTTGTAACGCATCTAGCTCAAATGGACCTAGACCCGAGATGTCTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN13952        --> GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- GTCAAATCGGATTCCTCGAAGGAAATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
EX889551       <-- GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
EX887844       <-- GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
EX748175       <-- GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. maritimus
EX761860       <-- GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus cv Early Scarlet Globe
EX893253       --> GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
EX891893       --> GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
FD959971       --> GTCAAATCGGATTCCTCGAAGGACATCTT.....................  Raphanus raphanistrum subsp. maritimus
FD976115       --> GTCAAATCGGATTCCTCGAAGGACATCTTAACAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> GTCAAATCGGATTCCTCGAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> GTCAAATCGGATTCCTCAAAGGACATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus sativus var. oleiformis
FD975733       --> GTCAAATCGGATTCCTCGAAGGAAATCTTAGCAAGAGCTCGGCTTGCATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN13952        --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
FD979740       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EW714294       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX889551       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX887844       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX748175       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX761860       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
FD946557       <-- TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX893253       --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EX891893       --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
FD959971       --> ..................................................
FD976115       --> TTTCCCTGCAAACAGAACGTATGGTCCACCTGGTCCATAAAACATCCTGC
EX766250       --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
EW719049       --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC
FD975733       --> TTTCCCTGCAAACAGAGCGTATGGTCCACCTGGTCCATAGAACATCCTGC

               601    -    651
UN13952        --> TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
FD979740       <-- TCTGGGAA..........................................
EW714294       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX889551       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX887844       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX748175       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX761860       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
FD946557       <-- TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX893253       --> TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EX891893       --> TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
FD959971       --> ..................................................
FD976115       --> TCTGGGAAACATCGTA..................................
EX766250       --> TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
EW719049       --> TCTGGGAAACATCGTAGATCTGGCCTTTGATGGCCATGAGAAGGGGGTTT
FD975733       --> TCTGGGAAACAT......................................

               651    -    701
UN13952        --> TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- TTGGGATCGGAGCCGTCGTACTGCTTGAGCTCCTCCTCCGTGATTTCTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus var. oleiformis
EX889551       <-- TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus var. oleiformis
EX887844       <-- TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus var. oleiformis
EX748175       <-- TTGGGATCGGAGCCGTCGTACTGCTTGAGCTCCTCCTCCGTGATTTCTCC  Raphanus raphanistrum subsp. maritimus
EX761860       <-- TTGGGATCGGAGCCGTCGTACTGCTTGAGCTCCTCCTCCGTGATTTCTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- TTGGGATCGGAGCCGTCGTACTGCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus cv Early Scarlet Globe
EX893253       --> TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus var. oleiformis
EX891893       --> TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTT....  Raphanus sativus var. oleiformis
FD959971       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD976115       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> TTGGGATCGGAGCCGTCGTACTGCTTGAGCTCCTCCTCCGTGATTTCTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> TTGGGATCGGAGCCGTCGTACTTCTTAAGCTCCTCCTCCGTGATTTCTCC  Raphanus sativus var. oleiformis
FD975733       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN13952        --> GAGCTGAACCGGAGGCGGTAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- GAGCTGAACCGGAGGCGGGAGGGGCTCAc.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- GAGCTGAACCGGAGGCGGTAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG  Raphanus sativus var. oleiformis
EX889551       <-- GAGCTGAACCGGAGGCGGTAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG  Raphanus sativus var. oleiformis
EX887844       <-- GAGCTGAACCGGAGGCGGTAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG  Raphanus sativus var. oleiformis
EX748175       <-- GAGCTGAACCGGAGGCGGGAGGGGCTCAGGCTGAGGGTAATCCTCCGTGG  Raphanus raphanistrum subsp. maritimus
EX761860       <-- GAGCTGAACCGGAGGCGGGAGGGGCTCAGGCTGAGGGTAATCCTCCGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- GAGCTGAACCGGAGGCGGAAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG  Raphanus sativus cv Early Scarlet Globe
EX893253       --> GAGCTGAACCGGAGGCGGTAGGGGC.........................  Raphanus sativus var. oleiformis
EX891893       --> ..................................................  Raphanus sativus var. oleiformis
FD959971       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD976115       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> GAGCTGAACCGGAGGCGGGAGGGGCTCAGGCTGAGGGTAATCCTCCGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> GAGCTGAACCGGAGGCGGTAGGGGCTCAGGCTGAGGGTAATCCTCCGTTG  Raphanus sativus var. oleiformis
FD975733       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN13952        --> AACGAGGACGGTGTTCCTCGGGGGAGACGAAGAAACCGGAGACGACTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD979740       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW714294       <-- AACGAGGACGGTGTTCCTCGGGGGAGACGAAGAAACCGGAGACGACTTGG  Raphanus sativus var. oleiformis
EX889551       <-- AACGAGGACGGTGTTCCTCGGGGGAGACGAAGAAGCCGGAGACGACTTGG  Raphanus sativus var. oleiformis
EX887844       <-- AACGAGGACGGTATTCCTCGGGGGAGACGAAGAAACCGGAGACGACTTGG  Raphanus sativus var. oleiformis
EX748175       <-- AGCGAGGACGGTGTTCCTCGGGGGAGACGAAGAAGCCGGAGACGACTTGG  Raphanus raphanistrum subsp. maritimus
EX761860       <-- AGCGAGGACGGTGTTCCTCGGGGGAGACGAAGAAGCCGGAGACGACTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946557       <-- AACGAGGACGGTGTTCCTCGGGGGAGACGAAGAAACCGGAGACGACTTGG  Raphanus sativus cv Early Scarlet Globe
EX893253       --> ..................................................  Raphanus sativus var. oleiformis
EX891893       --> ..................................................  Raphanus sativus var. oleiformis
FD959971       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD976115       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766250       --> AGCGAGGACGGTGTTCCTCGGGGGAGACGAA...................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW719049       --> AACGAGGACGGTGTTCCTCGGGGGAGACGAAGAAACCGGAGACGACTTGG  Raphanus sativus var. oleiformis
FD975733       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN13952        --> TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-GGCAGCCGGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- ..................................................
FD979740       <-- ..................................................
EW714294       <-- TAGACGGCGAAAGCGAGAGCCGAGACGGTGAAAAA-GGCAGCCGGAGAGA
EX889551       <-- TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-GGCAGCCGGAGAGA
EX887844       <-- TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-GGCAGCCGGAGAGA
EX748175       <-- TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-GGCAGCCGGAGAGA
EX761860       <-- TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-GGCAGCCGGAGAGA
FD946557       <-- TAGACGGCGAAAGCGAGAGCCAAGACTGTGAAAAAAGGCAGCCGGAGAGA
EX893253       --> ..................................................
EX891893       --> ..................................................
FD959971       --> ..................................................
FD976115       --> ..................................................
EX766250       --> ..................................................
EW719049       --> TAGACGGCGAAAGCGAGAGCCAAGACGGTGAAAAA-G-CAGCCGGAGAGA
FD975733       --> ..................................................

               851    -    901
UN13952        --> GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- ..................................................
FD979740       <-- ..................................................
EW714294       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
EX889551       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
EX887844       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
EX748175       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
EX761860       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
FD946557       <-- GTCCGGTGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATACTTCAACC
EX893253       --> ..................................................
EX891893       --> ..................................................
FD959971       --> ..................................................
FD976115       --> ..................................................
EX766250       --> ..................................................
EW719049       --> GTCCG-TGTAAGCTGTGATTGTTTCCTTGACCGTCTCCCATAGTTCAACC
FD975733       --> ..................................................

               901    -    951
UN13952        --> ACCATGATTAAAGGAGAGA--AGAGATAGATAGAGAGAGAGAGAGAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD980182       <-- ..................................................
FD979740       <-- ..................................................
EW714294       <-- AC................................................
EX889551       <-- ACCATGATTAAAGGAGAGA--AGAGATAGAGAGAGAGAGAGAtaatcggt
EX887844       <-- ACCATGATTAAAGGAGAGA--AGAGATAGATAGAGAGAGAGAtaatcggt
EX748175       <-- ACCATGATTAAAGGAGAGA--AGAGATAGATAGAGAGAGAGAtaatcggt
EX761860       <-- ACCATGATTAAAGGAGAGA--AGAGATAGATAGAGAGAGAGAtaatcggt
FD946557       <-- ACCATGATTAAAGGAGAGAGAAGAGATAGATAGAGAGAGAGAGAGAGATA
EX893253       --> ..................................................
EX891893       --> ..................................................
FD959971       --> ..................................................
FD976115       --> ..................................................
EX766250       --> ..................................................
EW719049       --> ACCATGATTAAAGGAGAGA---GAGATAGAGAGAGAGAGAGAtaatcgtg
FD975733       --> ..................................................

               951    -   1001
UN13952        --> ATCGGTGACTGGTTCC
                   ~~~~~~~~~~~~~~~~
FD980182       <-- ................
FD979740       <-- ................
EW714294       <-- ................
EX889551       <-- cc..............
EX887844       <-- gactggttcc......
EX748175       <-- gactggttcc......
EX761860       <-- gactcc..........
FD946557       <-- ATCGGTGACTGGTTCC
EX893253       --> ................
EX891893       --> ................
FD959971       --> ................
FD976115       --> ................
EX766250       --> ................
EW719049       --> actggttagagagcc.
FD975733       --> ................