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Alignment for radish unigene UN13953

               1      -     51
UN13953        --> GGGATTCCCCTTCATCGTCAACAAACATCGTCTCTCCTCCATTGCTATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD967589       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD939471       --> GGGATTCCCCTTCATCGTCAACAAACATCGTCTCTCCTCCATTGCTATTC  Raphanus sativus var. oleiformis
FD940458       --> .............gggGTCAACAAACATCGTCTCTCCTCCATTGCTATTC  Raphanus sativus var. oleiformis
FD941825       --> ................ggCAACAAACATCGTCTCTCCTCCAATGCTATTC  Raphanus sativus var. oleiformis
FD989989       --> .................ggAACAAACATCGTCTCTCCTCCATTGCTATTG  Raphanus raphanistrum subsp. landra
FD988980       --> ......................................ggATTGCTATTG  Raphanus raphanistrum subsp. landra
EY901271       --> .............................................gATTG  Raphanus raphanistrum subsp. maritimus
EY914529       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN13953        --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ..................................................
FD984824       <-- ..................................................
FD967589       <-- ..................................................
FD985704       <-- ..................................................
FD939471       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
FD940458       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
FD941825       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
FD989989       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
FD988980       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
EY901271       --> GCTTCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC
EY914529       --> ..ggCCTGAATCTTCGTCGAAGATGAGGATCACGCAGATCTTATTACCTC

               101    -    151
UN13953        --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ..................................................
FD984824       <-- ..................................................
FD967589       <-- ..................................................
FD985704       <-- ..................................................
FD939471       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG
FD940458       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG
FD941825       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG
FD989989       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCAGATCAG
FD988980       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG
EY901271       --> TGCTAATAATTTCACTCTCTTCAATCTCCTCC-ATGTTTTGTCTGATCAG
EY914529       --> TGCTAATAACTTCACTCTCTTCAATCTCCTCCCATGTTTTGTCTGATCAG

               151    -    201
UN13953        --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD967589       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD939471       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAGCC  Raphanus sativus var. oleiformis
FD940458       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAGCC  Raphanus sativus var. oleiformis
FD941825       --> ATCTCTTCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAGCC  Raphanus sativus var. oleiformis
FD989989       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAACC  Raphanus raphanistrum subsp. landra
FD988980       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAACC  Raphanus raphanistrum subsp. landra
EY901271       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAGCC  Raphanus raphanistrum subsp. maritimus
EY914529       --> ATCTTTCCAGCTCATCTAGTAGGAACATTCAGCCGAAACAATCGTGAACC  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN13953        --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ..................................................
FD984824       <-- ..................................................
FD967589       <-- ..................................................
FD985704       <-- ..................................................
FD939471       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
FD940458       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
FD941825       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
FD989989       --> AAAGTACATGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
FD988980       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
EY901271       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG
EY914529       --> AAAGTACACGATCGAGTATCTCCCCGAAGATGCACCTTTTCACCCGGGTG

               251    -    301
UN13953        --> ATAATCTGGAATCGATGGTGATGCATGACAAGCAAGGACGTAGATTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ........................................TAGATTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD967589       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD939471       --> ATAATCTGGAATCTATGGTGATGCATGACAAGCAAGGACGTAGATTCTTA  Raphanus sativus var. oleiformis
FD940458       --> ATAATCTGGAATCTATGGTGATGCATGACAAGCAAGGACGTAGATTCTTA  Raphanus sativus var. oleiformis
FD941825       --> ATAATCTGGAATCTATGGTGATGTATGACAAGCAAGGACGTAGATTCTTA  Raphanus sativus var. oleiformis
FD989989       --> ATAATCTGGAATCGATGGTGATGCATGACAAGCAAGGACGTAGATTCTTA  Raphanus raphanistrum subsp. landra
FD988980       --> ATAATCTGGAATCGATGGCGATGCATGACAAGCAAGGACGTAGATTCTTA  Raphanus raphanistrum subsp. landra
EY901271       --> ATAATCTGGAATCGATGGTGATGCATGACAAGCAAGGACGCAGATTCTTA  Raphanus raphanistrum subsp. maritimus
EY914529       --> ATAATCTGGAATCGATGGTGATGCATGACAAGCAAGGACGTAGATTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN13953        --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
FD984824       <-- ..........................................TCTCCTCA
FD967589       <-- ..................................................
FD985704       <-- ..................................................
FD939471       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
FD940458       --> TGTTTCTTACCAAAGGAGGAAGAATCT-GTACCGGATGGACCTCTCCTCA
FD941825       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
FD989989       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
FD988980       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
EY901271       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA
EY914529       --> TGTTTCTTACCAAAGGAGGAAGAATCTAGTACCGGATGGACCTCTCCTCA

               351    -    401
UN13953        --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACGGCTCA
FD984824       <-- GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
FD967589       <-- .....ACATCAGCACTGTGTTGATGGAAACTGATAAACAACAACAGCTCA
FD985704       <-- ..................................................
FD939471       --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
FD940458       --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
FD941825       --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
FD989989       --> GCAGAACATCAGCACTGTCTTGATGGAAACCGATAAACAACAACAGCTCA
FD988980       --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
EY901271       --> GCGGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACAGCTCA
EY914529       --> GCAGAACATCAGCACTGTCTTGATGGAAACTGATAAACAACAACGGCTCA

               401    -    451
UN13953        --> AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. landra
FD967589       <-- AGCTCAAGACCCCTGATCAACTTCTTCAACCCCTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD939471       --> AACTCAAGACCCCTGACGAACTTCTTCAACCACTCAACGACCAATGCCTT  Raphanus sativus var. oleiformis
FD940458       --> AACTCAAGACCCCTGACGAACTTCTTCAACCACTCAACGACCAATGCCTT  Raphanus sativus var. oleiformis
FD941825       --> AACTCAAGACCCCTGACGAACTTCTTCAACCACTCAACGACCAATGCCTT  Raphanus sativus var. oleiformis
FD989989       --> AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. landra
FD988980       --> AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. landra
EY901271       --> AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCGATGCCTT  Raphanus raphanistrum subsp. maritimus
EY914529       --> AGCTCAAGACCCCTGATCAACTCCTTCAACCACTCAACGACCAATGCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN13953        --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. landra
FD967589       <-- CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- .........................................CAAGTCAGT  Raphanus raphanistrum subsp. landra
FD939471       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTGAAGTCAGT  Raphanus sativus var. oleiformis
FD940458       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTGAAGTCAGT  Raphanus sativus var. oleiformis
FD941825       --> CTCAGGCAAGAGGGTAGGTGGTCCTATGAGTTTTGTCATCTGAAGTCAGT  Raphanus sativus var. oleiformis
FD989989       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. landra
FD988980       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. landra
EY901271       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTGAAGTCAGT  Raphanus raphanistrum subsp. maritimus
EY914529       --> CTCAGGCAAGAGGGTTGGTGGTCCTATGAGTTTTGTCATCTCAAGTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN13953        --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD984824       <-- AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD967589       <-- AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD985704       <-- AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD939471       --> AAGGCAGTTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD940458       --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGCTTTCTT
FD941825       --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD989989       --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
FD988980       --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT
EY901271       --> AAGGCAGCTACGCCTTGAGGATGGCACCAAGATTGTCCAAGAGTTCTCTT
EY914529       --> AAGGCAGCTACACCTTGAGGATGGCACCAAGATTGTCCAAGAGTTTTCTT

               551    -    601
UN13953        --> TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984824       <-- TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. landra
FD967589       <-- TGGGTAATTATGACCCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD985704       <-- TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. landra
FD939471       --> TGGGTAATTATGACCCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus sativus var. oleiformis
FD940458       --> TGGGTAATTATGACCCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus sativus var. oleiformis
FD941825       --> TGGGTAATTATGACCCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus sativus var. oleiformis
FD989989       --> TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. landra
FD988980       --> TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. landra
EY901271       --> TGGGTAATTATGACCCAGAGGCAACTGCTGCTTTCAATCAAAATGTATCT  Raphanus raphanistrum subsp. maritimus
EY914529       --> TGGGTAATTATGACGCAGAGGCAACTGCTGCTTTTAATCAAAATGTATCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN13953        --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- CATGCTTTTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
FD984824       <-- CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
FD967589       <-- CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
FD985704       <-- CATGCTTTTACTATGAAAGAGAGGTATCATTTTCATATTTTCACCAATGG
FD939471       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATATTCACCAATGG
FD940458       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATATTCACCAATGG
FD941825       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATATTCACCAATGG
FD989989       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
FD988980       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
EY901271       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG
EY914529       --> CATGCTTCTACTATGAAAGAGAGGTATCATTCTCATATTTTCACCAATGG

               651    -    701
UN13953        --> GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
FD984824       <-- GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
FD967589       <-- GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
FD985704       <-- GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
FD939471       --> GACCACCTGTGATCTTACAGGGACGCCTCGTGAAGTCGAGGTGAGGTTTG
FD940458       --> GACCACCTGTGATCTT..................................
FD941825       --> GACCACCTGTGATCTTACAGGA-CGCCTCGTGAAGT..............
FD989989       --> GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
FD988980       --> GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
EY901271       --> GACCACCTGTGATCTTACAGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG
EY914529       --> GACCACCTGTGATCTTACCGGAACGCCTCGAGAAGTCGAGGTGAGGTTTG

               701    -    751
UN13953        --> TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT
FD984824       <-- TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT
FD967589       <-- TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTATCCACT
FD985704       <-- TATGGGCAGAAACCAGGGCTATGGTCACTTTTCTCACTGAGCTGTCCACT
FD939471       --> TCTGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTATCCACT
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT
FD988980       --> TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT
EY901271       --> TCTGCGCAGAAACCAGGGCAATGGTCACTTCTCTCACTGAGCTATCCACT
EY914529       --> TATGCGCAGAAACCAGGGCTATGGTCACTTCTCTCACTGAGCTGTCCACT

               751    -    801
UN13953        --> TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
FD984824       <-- TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
FD967589       <-- TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
FD985704       <-- TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
FD939471       --> TGCAAGTACGCACTGACTGTTCAGTGTCCGACCTTGTGCAAGCATCCGCT
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> TGCAAGTACGCACTGACTGTTCAGTGC.......................
FD988980       --> TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT
EY901271       --> TGCAAGTACGCACTGACTGT-CAGTGCTCGAC-TTGTGCA-GCATC-GCT
EY914529       --> TGCAAGTACGCACTGACTGTTCAGTGCCCGACCTTGTGCAAGCATCCGCT

               801    -    851
UN13953        --> GTTTCAGCTAGAGAAACCAGTATCACACACGATCCACTGCAATTTGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- GTTTCAGCTAGAGAAACCAGTATCACACACGATCCACTGCAATTTGATCC
FD984824       <-- GTTTCAGCTAGAGAAACCAGTATCACACACGATCCACTGCAATTTGATCC
FD967589       <-- GTTTCAGCTAGAGAAACCAGTATCACACACGATCCACTGCAATTTGATCC
FD985704       <-- GTTTCAGCTAGAGAAACCAGTATCACACACGATCCACTGCAATTTGATCC
FD939471       --> GTTTCAGCTAGAGAA-CCAGCGTCACACAC-ATCCACTGCA-TTTGATCC
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> ..................................................
FD988980       --> GTTTCAGCTAGAGAAAC-AGTATCACACACGATCCACTGCAATTTGAT..
EY901271       --> GTT-CAGCTAGAGAAcagtgtca...........................
EY914529       --> GTTTCAGCTA........................................

               851    -    901
UN13953        --> CGGTGGAAGAAGACGCAACAAGAAACGAGGAAGAACGAGTAGTGAGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- CGGTGGAAGAAGACGCAACAAGAAACGAGGAAGAACGAGTAGTGAGCGAA
FD984824       <-- CGGTGGAAGAAGACGCAACAAGAAACGAGGAAGAACGAGTAGTGAGGGAA
FD967589       <-- CGGTGGAAGAAGACGCAACAAGAAACGAGGAAGAACGAGTAGTGAGCGAA
FD985704       <-- CGGTGGAAGAAGACGCAACAAGAAACGAGGAAGAACGAGTAGTGAGCGAA
FD939471       --> Ccaggagaga........................................
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> ..................................................
FD988980       --> ..................................................
EY901271       --> ..................................................
EY914529       --> ..................................................

               901    -    951
UN13953        --> TCACCTAAGGTTGCCGATTCTTGAAAACCACTTAAGTGAAATACAGGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TCACCTAAGGTTGCCGATTCTTGAAAACCACTTAAGTGAAATACAGGAGT
FD984824       <-- TCACCTAAGGTTGCCGATTCTTGAAAACCACTTAAGTGAAATACAGGAGT
FD967589       <-- TCACCTAAGGTTGCCGATTCTTGAAAACCACTTAAGTGAAATACAGGAGT
FD985704       <-- TCACCTAAGGTTGCCGATTCTTGAAAACCACTTAAGTGAAATACAGGAGT
FD939471       --> ..................................................
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> ..................................................
FD988980       --> ..................................................
EY901271       --> ..................................................
EY914529       --> ..................................................

               951    -   1001
UN13953        --> AACAGTTAAAACAGTAACTATATATAAGAAGAGCTAGTATATATCCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- AACAGTTAAAGCAGTAACTATATATAAGAAGAGCTAGTATATATCCAGTG
FD984824       <-- AACAGTTAAAACAGTAACTATATATAAGAAGAGCTAGTATATATCCAGTG
FD967589       <-- AACAGTTAAAACAGTAACTATATATAAGAAGAGCTAGTATATATCCAGTG
FD985704       <-- AACAGTTAAAACAGTAACTATATATAAGAAGATTTAGTATATATCCAGTG
FD939471       --> ..................................................
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> ..................................................
FD988980       --> ..................................................
EY901271       --> ..................................................
EY914529       --> ..................................................

               1001   -   1051
UN13953        --> TCGGTGAATTGCTCATGGTTATAAACCTGTTTTCATGAAGAATGAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- TCGGTGAATTGCTCATGGTTATAAACCTGTTTTCATGAAGAATGAATGAG
FD984824       <-- TCGGTGAATTGCTCATGGTTATAAACCTGTTTTCATGAAGAATGAATGAG
FD967589       <-- TCGGTGAATTGCTCATGGTTATAAACCTGTTTTCATGAAGAATGAATGAG
FD985704       <-- TCGGTGAATTGCTCATGGTTATAAACCTGTTTTCATGAAGAATGAATGAG
FD939471       --> ..................................................
FD940458       --> ..................................................
FD941825       --> ..................................................
FD989989       --> ..................................................
FD988980       --> ..................................................
EY901271       --> ..................................................
EY914529       --> ..................................................

               1051   -   1101
UN13953        --> ATGAATCTATCCAAGTTTTACTTTA....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY910554       <-- ATTAATCTATCCAAGTTTTACTTTAg...
FD984824       <-- ATGAATCCATCCAAGTTTTACT.......
FD967589       <-- ATGAATCTATCCAAGTTTTACTTTAttcc
FD985704       <-- ATGAATCTATCCAAGTT............
FD939471       --> .............................
FD940458       --> .............................
FD941825       --> .............................
FD989989       --> .............................
FD988980       --> .............................
EY901271       --> .............................
EY914529       --> .............................