1      -     51
UN13958        --> TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD538144       <-- TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD539403       <-- TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD968105       <-- TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD969112       <-- TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EV572671       <-- .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EY911796       <-- .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EY920227       <-- .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD976406       <-- .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EW727922       <-- .....tcCAAACAATTTTATCATATAAAACTAACTAACTAAACATGAAGA
EY908333       --> TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD543609       --> TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD972155       --> TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD973411       --> TAAAATTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EV567812       --> .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EY916059       --> .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EY924608       --> .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
FD980532       --> .....TTCAAACAATTTTATCATACAAAACTAACTAACTAGTCATGAAGA
EW716761       --> .....tcCAAACAATTTTATCATATAAAACTAACTA----GTCATGAAGA
EW723046       --> .....tcCAAACAATTTTATCATATAAAACTAACTAACTAAACATGAAGA
EX898488       --> .....tcCAAACAATTTTATCATATAAAACTAACTAACTAAACATGAAGA
FY431219       --> .......................................AGTCATGAAGA
FD563704       --> ..................................................
EV548870       --> ..................................................
FY431040       --> ..................................................

               51     -    101
UN13958        --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- TCT--TCATTGGCACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD538144       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD539403       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD968105       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD969112       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EV572671       <-- TCTTGGCCTTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EY911796       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EY920227       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD976406       <-- TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EW727922       <-- TCTTGGCATTGACACTCATGGTTTTCGTCATTCTTTCGCCATCATTTGCG
EY908333       --> TCTT--CATTGGCACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD543609       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD972155       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD973411       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EV567812       --> TCTTGGCCTTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EY916059       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EY924608       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD980532       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EW716761       --> TCTTGGCATTGACACTCATGGTTTTGGTCATCCTTTCGCCATCATTTGCG
EW723046       --> TCTTGGCATTGACACTCATGGTTTTCGTCATTCTTTCGCCATCATTTGCG
EX898488       --> TCTTGGCATTGACACTCATGGTTTTCGTCATTCTTTCGCCATCATTTGCG
FY431219       --> TCTTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
FD563704       --> ..TTGGCATTGACACTCATGGTTTTGGTCATTCTTTCGCCATCATTTGCG
EV548870       --> ...........................gCATTCTTTCGCCATCATTTGCG
FY431040       --> ..................................................

               101    -    151
UN13958        --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD538144       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD539403       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD968105       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD969112       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EV572671       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EY911796       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EY920227       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD976406       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EW727922       <-- GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EY908333       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD543609       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD972155       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD973411       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EV567812       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EY916059       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EY924608       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD980532       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EW716761       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EW723046       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
EX898488       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FY431219       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FD563704       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGGGCGGCATGTGACGCCAA
EV548870       --> GCTCCAACTGAAGTGGTAGACACTGCTGTTGGAGCGGCATGTGACGCCAA
FY431040       --> ..................................................

               151    -    201
UN13958        --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538144       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539403       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968105       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969112       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572671       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAAGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. landra
EY911796       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACCGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920227       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. landra
FD976406       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACCGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW727922       <-- GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus cv Early Scarlet Globe
EY908333       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543609       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972155       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973411       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567812       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAAGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. landra
EY916059       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACCGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924608       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. landra
FD980532       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACCGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716761       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus var. oleiformis
EW723046       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus cv Early Scarlet Globe
EX898488       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus cv Early Scarlet Globe
FY431219       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus cv GSK3-1
FD563704       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACAGGAGGAGGCCAACCCTCGG  Raphanus sativus var. oleiformis
EV548870       --> GCAGCTTCAGCCTTGCCTGGCAGCGATTACCGGAGGAGGCCAACCCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431040       --> .........................................AACCCTCGG  Raphanus sativus cv GSK3-1

               201    -    251
UN13958        --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538144       <-- GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539403       <-- GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968105       <-- GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969112       <-- GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572671       <-- GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus raphanistrum subsp. landra
EY911796       <-- GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920227       <-- GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus raphanistrum subsp. landra
FD976406       <-- GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW727922       <-- GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus sativus cv Early Scarlet Globe
EY908333       --> GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543609       --> GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972155       --> GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973411       --> GTGATTGTTGTGCAAATCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567812       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus raphanistrum subsp. landra
EY916059       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924608       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus raphanistrum subsp. landra
FD980532       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716761       --> GTGATTGTTGTGCAAAGCTGAATGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus sativus var. oleiformis
EW723046       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus sativus cv Early Scarlet Globe
EX898488       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus sativus cv Early Scarlet Globe
FY431219       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus sativus cv GSK3-1
FD563704       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus sativus var. oleiformis
EV548870       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431040       --> GTGATTGTTGTGCAAAGCTGAAGGAGCAACAGCCATGCTTGTGTGGATTT  Raphanus sativus cv GSK3-1

               251    -    301
UN13958        --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD538144       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD539403       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD968105       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD969112       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EV572671       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EY911796       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EY920227       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD976406       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EW727922       <-- GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EY908333       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD543609       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD972155       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD973411       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EV567812       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EY916059       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EY924608       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD980532       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EW716761       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EW723046       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EX898488       --> GCTAAGAACCCTGCGTTTGCTCAGTACATT....................
FY431219       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FD563704       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
EV548870       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA
FY431040       --> GCTAAGAACCCTGCGTTTGCTCAGTACATTAGCTCTCCCAACTCTCGCAA

               301    -    351
UN13958        --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538144       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539403       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGCTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968105       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969112       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572671       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. landra
EY911796       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920227       <-- ACTCCTATCCACTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. landra
FD976406       <-- ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW727922       <-- ACTCCTATCCGCTTGTGGTGTTTTTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus sativus cv Early Scarlet Globe
EY908333       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543609       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGCTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972155       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973411       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAATAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567812       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. landra
EY916059       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924608       --> ACTCCTATCCACTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. landra
FD980532       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716761       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTGGAG  Raphanus sativus var. oleiformis
EW723046       --> ACTCCTATCCGCTTGTGGTGTTTCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus sativus cv Early Scarlet Globe
EX898488       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY431219       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAATTCCAGAG  Raphanus sativus cv GSK3-1
FD563704       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus sativus var. oleiformis
EV548870       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAAATCTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431040       --> ACTCCTATCCGCTTGTGGTGTTCCTTATCCAAGTTGCTAAAATTCCAGAG  Raphanus sativus cv GSK3-1

               351    -    401
UN13958        --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD538144       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD539403       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD968105       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD969112       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EV572671       <-- ATTTTATAATTAACCAAATAAATAAATAA----CGAGTACGGAAGATAAA
EY911796       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EY920227       <-- ATTTTATAATTAACCAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD976406       <-- ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EW727922       <-- ATTTTATCATTAACTAAATAAATAAATGA----CGAGTACGGAAGATAAA
EY908333       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD543609       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD972155       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD973411       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EV567812       --> ATTTTATAATTAACCAAATAAATAAATAA----CGAGTACGGAAGATAAA
EY916059       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EY924608       --> ATTTTATAATTAACCAAATAAATAAATAA----CGAGTACGGAAGATAAA
FD980532       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EW716761       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EW723046       --> ATTTTATCATTAACTAAATAAATAAATGA----CGAGTACGGAAGATAAA
EX898488       --> ..................................................
FY431219       --> ATTTTATAATTAACTAAATAAATAAATAAATAACGAGTACGGAAGATAAA
FD563704       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
EV548870       --> ATTTTATAATTAACTAAATAAATAAATAA----CGAGTACGGAAGATAAA
FY431040       --> ATTTTATAATTAACTAAATAAATAAATAAATAACGAGTACGGAAGATAAA

               401    -    451
UN13958        --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538144       <-- TAATATTTTATCAAACTATGTTCATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539403       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968105       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969112       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572671       <-- TAATATTTTATCGAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. landra
EY911796       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920227       <-- TAATATTTTATCGAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. landra
FD976406       <-- TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW727922       <-- TAATATTTTATCAAACTATGTTTATGAAACAATGTAAACGTTTGGACTAA  Raphanus sativus cv Early Scarlet Globe
EY908333       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543609       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972155       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973411       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567812       --> TAATATTTTATCGAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. landra
EY916059       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924608       --> TAATATTTTATCGAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. landra
FD980532       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW716761       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus sativus var. oleiformis
EW723046       --> TAATATTTTATCAAACTATGTTTATGAAACAATGTAAACGTTTGGACTAA  Raphanus sativus cv Early Scarlet Globe
EX898488       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY431219       --> TAATATTTTATCAAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus sativus cv GSK3-1
FD563704       --> TGATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus sativus var. oleiformis
EV548870       --> TAATATTTTATCAAACTATGTTTATGAAGCAATGTAAACGTTTGGATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY431040       --> TAATATTTTATCAAACTATGTTTATGAAACAATGTAAACGTTTGGATTAA  Raphanus sativus cv GSK3-1

               451    -    501
UN13958        --> TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY904049       <-- TGTAATCGTTTATACC..................................
FD538144       <-- TGTAATCGTTTATACCTAACATTTTATCGg....................
FD539403       <-- TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGC...........
FD968105       <-- TGTAATCGTTTATACCc.................................
FD969112       <-- TGTAATCGTTTATACCc.................................
EV572671       <-- TGTAATCGTTTAaccggttaactaaagaagtttcttat............
EY911796       <-- TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
EY920227       <-- TGTAATCGTTTAaccggttaactaaagaagtttcttattt..........
FD976406       <-- TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
EW727922       <-- TGTAATCGTTacggttaacc..............................
EY908333       --> TGTAATCGTTTATACC..................................
FD543609       --> TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGC...........
FD972155       --> TGTAATCGTTTATACCc.................................
FD973411       --> TGTAATCGTTTATACCc.................................
EV567812       --> TGTAATCGTTTAaccggttaactaaagaagtttcttat............
EY916059       --> TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
EY924608       --> TGTAATCGTTTAaccggttaactaaagaagtttcttattt..........
FD980532       --> TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
EW716761       --> TGTAATCGTTTATACC..................................
EW723046       --> TGTAATCGTTacggttaacc..............................
EX898488       --> ..................................................
FY431219       --> TGTAATCGTTTATACggttaactaaagaagtttcttattt..........
FD563704       --> TGTAATCGTTTATACCTAACATTTTATCGTAGTTGATGCGAAATCATAAT
EV548870       --> TGTAATCGTTTATACCTAACATTTTATCGTAG..................
FY431040       --> TGTAATCGTTTATACggttaactaaagaagtttcttatttatt.......

               501    -    551
UN13958        --> AAGATCGTTATGATACCCG
                   ~~~~~~~~~~~~~~~~~~~
EY904049       <-- ...................
FD538144       <-- ...................
FD539403       <-- ...................
FD968105       <-- ...................
FD969112       <-- ...................
EV572671       <-- ...................
EY911796       <-- AAGATCGTTATGATACCC.
EY920227       <-- ...................
FD976406       <-- AAGATCGTTATGATACCCG
EW727922       <-- ...................
EY908333       --> ...................
FD543609       --> ...................
FD972155       --> ...................
FD973411       --> ...................
EV567812       --> ...................
EY916059       --> AAGATCGTTATGATACCC.
EY924608       --> ...................
FD980532       --> AAGATCGTTATGATACCCG
EW716761       --> ...................
EW723046       --> ...................
EX898488       --> ...................
FY431219       --> ...................
FD563704       --> AAGATCGTTATGATACC..
EV548870       --> ...................
FY431040       --> ...................