1      -     51
UN13960        --> TTTTTTGAGCTTAATATAGTTTCTTTTTGGTTGTTTGGTTTTGTTAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TTTTTTGAGCTTAATATAGTTTCTTTTTGGTTGTTTGGTTTTGTTAGTTT
FD560541       <-- .................................................T
FD987663       <-- ..................................................
EV525591       <-- ..................................................
EX765833       <-- ..................................................
FD562770       <-- ..................................................
FD940297       <-- ..................................................
FD532482       <-- ..................................................
FD988013       <-- ..................................................
EX771159       <-- ..................................................
EW717894       <-- ..................................................
EW718243       <-- ..................................................
EX748395       <-- ..................................................
FD532079       <-- ..................................................
FD557794       <-- ..................................................
EY914653       <-- ..................................................
FD959310       --> ......GAGCTTAATATAGTTTCTTTTTGGTTGTTTGGTTTTGTTAGTTT
FD983672       --> ..................................................
EV530298       --> ..................................................
FD566596       --> ..................................................
FD528943       --> ..................................................
EW720699       --> ..................................................
EW721921       --> ..................................................
EX752337       --> ..................................................
FD553825       --> ..................................................
FD528641       --> ..................................................
EX775254       --> ..................................................

               51     -    101
UN13960        --> GGCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- GGCAAATACAATAAGCATTTTCCCAGGCTTTAAAATCTCATCATATTCAT
FD560541       <-- GGCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
FD987663       <-- GGCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
EV525591       <-- gaCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
EX765833       <-- .......AGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
FD562770       <-- .............AGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
FD940297       <-- ...................TCCCAAGGCTTTAAAATCTCATCATATTCAT
FD532482       <-- ....................CCCAAGGCTTTAAAATCTCATCATATTCAT
FD988013       <-- .....................CCAAGGCTTTAAAATCTCATCATATTCAT
EX771159       <-- ....................ctCAAGGCTT-AAAATCTCATCATATTCAT
EW717894       <-- .........................GGCTTTAAAATCTCATCATATTCAT
EW718243       <-- .........................GGCTTTAAAATCTCATCATATTCAT
EX748395       <-- .........................GGCTTTAAAATCTCATCATATTCAT
FD532079       <-- ........................cGGCTTTAAAATCTCATCATATTCAT
FD557794       <-- .........................GGCTTTAAAATCTCATCATATTCAT
EY914653       <-- ..................................................
FD959310       --> GGCAAATACAATAAGCATTTTCCCAGGCTTTAAAATCTCATCATATTCAT
FD983672       --> GGCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
EV530298       --> gaCAAATAGAATAAGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
FD566596       --> .............AGCATTTCCCAAGGCTTTAAAATCTCATCATATTCAT
FD528943       --> ....................CCCAAGGCTTTAAAATCTCATCATATTCAT
EW720699       --> .........................GGCTTTAAAATCTCATCATATTCAT
EW721921       --> .........................GGCTTTAAAATCTCATCATATTCAT
EX752337       --> .........................GGCTTTAAAATCTCATCATATTCAT
FD553825       --> .........................GGCTTTAAAATCTCATCATATTCAT
FD528641       --> ..................................................
EX775254       --> ..................................................

               101    -    151
UN13960        --> TAAGCAACAAACCAAATAAGTACGAAACACATGTTCGTGTGTTTTCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TAAGCAACAAACCAAATAAGTA-GAACCACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD560541       <-- TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
FD987663       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
EV525591       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
EX765833       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
FD940297       <-- TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
FD532482       <-- TAAGCAGCAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD988013       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
EX771159       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
EW717894       <-- TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
EW718243       <-- TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
EX748395       <-- TAAGCAACAAACCAAATAAGTA-GAACCACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD532079       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD557794       <-- TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
EY914653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> TAAGCAACAAACCAAATAAGTA-GAACCACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD983672       --> TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
EV530298       --> TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD566596       --> TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
FD528943       --> TAAGCAGCAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
EW720699       --> TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
EW721921       --> TAAGCAACAAACCAAATAAGTA-GAAACACATGTTCGTGTGTTTTCTGAT  Raphanus sativus var. oleiformis
EX752337       --> TAAGCAACAAACCAAATAAGTA-GAACCACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
FD553825       --> TAAGCAACAAACCAAATAAG-ACGAAACACATGTTCGTGTGTTTTCTGAT  Raphanus raphanistrum subsp. landra
FD528641       --> ..................................TCGTGGGTTTTCTGAT  Raphanus raphanistrum subsp. maritimus
EX775254       --> ..................................................  Raphanus raphanistrum subsp. landra

               151    -    201
UN13960        --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD560541       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD987663       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EV525591       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EX765833       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD562770       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD940297       <-- TCAGATTACAGATGATGAAAGCTATTTAACATCATCAGCGACTTGCTCGT
FD532482       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD988013       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EX771159       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EW717894       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EW718243       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EX748395       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD532079       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD557794       <-- TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EY914653       <-- ..................................................
FD959310       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD983672       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EV530298       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD566596       --> TCAAATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD528943       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EW720699       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EW721921       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EX752337       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD553825       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
FD528641       --> TCAGATTACAGATGATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT
EX775254       --> ..............ATGAAAGCTCTTTAACATCATCAGCGACTTGCTCGT

               201    -    251
UN13960        --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD560541       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD987663       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EV525591       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EX765833       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD562770       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD940297       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD532482       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD988013       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EX771159       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EW717894       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EW718243       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EX748395       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD532079       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD557794       <-- AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EY914653       <-- ..................................................
FD959310       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD983672       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EV530298       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD566596       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD528943       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EW720699       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EW721921       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EX752337       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD553825       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
FD528641       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA
EX775254       --> AGTCTGACTTCAACTTTTCGAGATCCTCTGCACTTAGCTCTCCTTTTGCA

               251    -    301
UN13960        --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD560541       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
FD987663       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
EV525591       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
EX765833       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
FD940297       <-- GGTTTAAGCATGACCAGGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
FD532482       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD988013       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
EX771159       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
EW717894       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
EW718243       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
EX748395       <-- GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD532079       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD557794       <-- GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
EY914653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD983672       --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
EV530298       --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD566596       --> GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
FD528943       --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
EW720699       --> GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
EW721921       --> GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus sativus var. oleiformis
EX752337       --> GGTTTAAGCATGACCAAGACACAGCAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
FD553825       --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. landra
FD528641       --> GGTTTAAGCATGACCAAGACACAACAAGTTGGTCGTTTTGTAGCACCGGC  Raphanus raphanistrum subsp. maritimus
EX775254       --> GGTTTAAGCATGACCAAAACACAACAAGTTGGTCGTTTTGTAACACCGGC  Raphanus raphanistrum subsp. landra

               301    -    351
UN13960        --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD560541       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
FD987663       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
EV525591       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
EX765833       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
FD940297       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
FD532482       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD988013       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
EX771159       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
EW717894       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
EW718243       <-- TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
EX748395       <-- TTGCGCAAGATACTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD532079       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD557794       <-- TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
EY914653       <-- ........................................ATACCAGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD983672       --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
EV530298       --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD566596       --> TTGCGCAAGATCCTCTTTTGATGGAACGTAAACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
FD528943       --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
EW720699       --> TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
EW721921       --> TTGCGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus sativus var. oleiformis
EX752337       --> TTGCGCAAGATACTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
FD553825       --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra
FD528641       --> TTGGGCAAGATCCTCTTTTGATGGAACGTAGACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. maritimus
EX775254       --> TTGGGCAAAATCCTCTTTTGATGGAACGTAAACGTAAGGAATACCAGCTT  Raphanus raphanistrum subsp. landra

               351    -    401
UN13960        --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD560541       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD987663       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EV525591       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EX765833       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD562770       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGTGATATGTTT
FD940297       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATACGTTT
FD532482       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD988013       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EX771159       <-- CCTCACACAAGATTGGAACATGGGTAATCGCATCGATGGGAGATATGTTT
EW717894       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCAATGGGAGATATGTTT
EW718243       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EX748395       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD532079       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD557794       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EY914653       <-- CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD959310       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD983672       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EV530298       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD566596       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGTGATATGTTT
FD528943       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EW720699       --> CCTCACACAAGATTGGAACATGGGTAATCACATCAATGGGAGATATGTTT
EW721921       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EX752337       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD553825       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
FD528641       --> CCTCACACAAGATTGGAACATGGGTAATCACATCGATGGGAGATATGTTT
EX775254       --> CCTCACACAAAATTGGAACATGGGTAATCCCATCGATGGGAAATATGTTT

               401    -    451
UN13960        --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD560541       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
FD987663       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
EV525591       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
EX765833       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- CCAGCTATAACACATATTCCCTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
FD940297       <-- CCAGCTATAACACATATTCCCTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
FD532482       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD988013       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
EX771159       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
EW717894       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
EW718243       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
EX748395       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD532079       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD557794       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
EY914653       <-- CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTCACCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD983672       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
EV530298       --> CCAGCTATAACACATATTC...............................  Raphanus raphanistrum subsp. maritimus
FD566596       --> CCAGCTATAACACATATTCCCTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
FD528943       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
EW720699       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
EW721921       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCGAATGCTCTTAACCAC  Raphanus sativus var. oleiformis
EX752337       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
FD553825       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra
FD528641       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. maritimus
EX775254       --> CCAGCTATAACACATATTCCTTTCTGACCACGTCTTATGCTCTTAACCAC  Raphanus raphanistrum subsp. landra

               451    -    501
UN13960        --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD560541       <-- TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
FD987663       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
EV525591       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
EX765833       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
FD940297       <-- TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
FD532482       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD988013       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
EX771159       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
EW717894       <-- TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
EW718243       <-- TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
EX748395       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD532079       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD557794       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
EY914653       <-- TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD983672       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
EV530298       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566596       --> TTCTTTAACGCCCCTCTTCAAACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
FD528943       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
EW720699       --> TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
EW721921       --> TTCTTTAACGCCCCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus sativus var. oleiformis
EX752337       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD553825       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. landra
FD528641       --> TTCTTTAACGCCTCTCTTCAGACACTTCTTTCCAGCAGCTTTTTGAATGA  Raphanus raphanistrum subsp. maritimus
EX775254       --> TTCTTTAACGCCTCTC..................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN13960        --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD560541       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
FD987663       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
EV525591       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
EX765833       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCAGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
FD940297       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
FD532482       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD988013       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
EX771159       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
EW717894       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
EW718243       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
EX748395       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD532079       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD557794       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
EY914653       <-- GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD983672       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTTCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
EV530298       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566596       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCAGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
FD528943       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
EW720699       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
EW721921       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCCAGAGGTTTAGCGATA  Raphanus sativus var. oleiformis
EX752337       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
FD553825       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. landra
FD528641       --> GCTTGAATGTCCTCTTCTGGAGCTTTTTCCCGGCGAGAGGTTTAGCGATA  Raphanus raphanistrum subsp. maritimus
EX775254       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN13960        --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD560541       <-- GGAGCAAGAGAGATG...................................
FD987663       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EV525591       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EX765833       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD562770       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD940297       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD532482       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD988013       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EX771159       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTAC
EW717894       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EW718243       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EX748395       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD532079       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD557794       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EY914653       <-- GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTAC
FD959310       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD983672       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EV530298       --> ..................................................
FD566596       --> GGAGCAAGAAAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD528943       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EW720699       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EW721921       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EX752337       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD553825       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
FD528641       --> GGAGCAAGAGAGATGACCTTCTTCTTCTCCTTTTGAATCGACTTCTCTGC
EX775254       --> ..................................................

               601    -    651
UN13960        --> TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
FD560541       <-- ..................................................  Raphanus sativus var. oleiformis
FD987663       <-- TTCGGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
EV525591       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
EX765833       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562770       <-- TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA-  Raphanus sativus var. oleiformis
FD940297       <-- TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCCGAGTGAAAA-  Raphanus sativus var. oleiformis
FD532482       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
FD988013       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
EX771159       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
EW717894       <-- TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA-  Raphanus sativus var. oleiformis
EW718243       <-- TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA-  Raphanus sativus var. oleiformis
EX748395       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
FD532079       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
FD557794       <-- TTCTGTATCGCTTCCCATGTCTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
EY914653       <-- TTCTGTATCGCTTCCCATGTTTTTAGCTAACAAAGCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959310       --> TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
FD983672       --> TTCGGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
EV530298       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566596       --> TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA-  Raphanus sativus var. oleiformis
FD528943       --> TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
EW720699       --> TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA-  Raphanus sativus var. oleiformis
EW721921       --> TTCTGTATCGCTTCCCATATTTTTAGCTAACAAAGCAGCTGAGTGAAAA.  Raphanus sativus var. oleiformis
EX752337       --> TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAATGAAAAA  Raphanus raphanistrum subsp. maritimus
FD553825       --> TTCTGTATCGCTTCCCATGTCTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. landra
FD528641       --> TTCTGTATCGCTTCCCATGTTTTTAGCTAACAA-GCAGCTGAGTGAAAAA  Raphanus raphanistrum subsp. maritimus
EX775254       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN13960        --> TGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTTAAGCGGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD962850       <-- TGGCGGAAGAGTAGaggtagtggttcgagcggttcc..............
FD560541       <-- ..................................................
FD987663       <-- TGGCGGAAGAGTAGaggtagtggttttagcggttgccc............
EV525591       <-- TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
EX765833       <-- TGGCGGAAGAGTAGaggtagtggttcaagcggttgctcgacc........
FD562770       <-- TGGCGGAAGAGTAGCGGAAACAGGTAGAGGTAGTGGTTTAAGCGGTTGCT
FD940297       <-- TGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTTAAGCGGTTGCT
FD532482       <-- TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
FD988013       <-- TGGCGGAAGAGTAGaggtagtggttttagcggttgctccc..........
EX771159       <-- TGGCGGAAGAGTAGaggtagtggttttagcggttgctccc..........
EW717894       <-- TGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTTAAGCGGTTGCT
EW718243       <-- TGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTTAAGCGGTTGCT
EX748395       <-- TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
FD532079       <-- TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
FD557794       <-- TGGCGGAAGAGTAGaggtagtggttttagcggttgctccc..........
EY914653       <-- TGGCGGAAGAGTAGCGGAAACAAATGGAGGTAGGGGTTTTAGCGGTTGCT
FD959310       --> TGGCGGAAGAGTAGaggtagtggttcgagcggttcc..............
FD983672       --> TGGCGGAAGAGTAGaggtagtggttttagcggttgccc............
EV530298       --> ..................................................
FD566596       --> TGGCGGAAGAGTAGCGGAAACAGGTAGAGGTAGTGGTTTAAGCGGTTGCT
FD528943       --> TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
EW720699       --> TGGCGGAAGAGTAGCGGAAACAAGTAGAGGTAGTGGTTTAAGCGGTTGCT
EW721921       --> ..................................................
EX752337       --> TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
FD553825       --> TGGCGGAAGAGTAGaggtagtggttttagcggttgctccc..........
FD528641       --> TGGCGGAAGAGTAGaggtagtggttcaagcggttgctccc..........
EX775254       --> ..................................................

               701    -    751
UN13960        --> CCC....
                   ~~~~~~~
FD962850       <-- .......
FD560541       <-- .......
FD987663       <-- .......
EV525591       <-- .......
EX765833       <-- .......
FD562770       <-- CCC....
FD940297       <-- Cgagacc
FD532482       <-- .......
FD988013       <-- .......
EX771159       <-- .......
EW717894       <-- Cgagccc
EW718243       <-- CCC....
EX748395       <-- .......
FD532079       <-- .......
FD557794       <-- .......
EY914653       <-- Cgagacc
FD959310       --> .......
FD983672       --> .......
EV530298       --> .......
FD566596       --> CCC....
FD528943       --> .......
EW720699       --> Cgagccc
EW721921       --> .......
EX752337       --> .......
FD553825       --> .......
FD528641       --> .......
EX775254       --> .......