RadishBase

| | | |
Alignment for radish unigene UN13999

               1      -     51
UN13999        --> GGATCCCATGGCAAACAAGATGATTCACATAAACTAGTGTTCTCTCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> GGATCCCATGGCAAACAAGATGATTCACATAAACTAGTGTTCTCTCCACA
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               51     -    101
UN13999        --> AGCTATCTTCCACGTTTCATCAATCAATCTCAGCAACTCTTACATCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> AGCTATCTTCCACGTTTCATCAATCAATCTCAGCAACTCTTACATCTGAT
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               101    -    151
UN13999        --> TAGCCAATTGTAGCCACCAGCAGATCTCCCCAGATTCATTTCTAAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> TAGCCAATTGTAGCCACCAGCAGATCTCCCCAGATTCATTTCTAAATCTA
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               151    -    201
UN13999        --> TCAAAACCATGGCGATCAAGTCCGACAACAAAACAAGAAGTACGAACACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> TCAAAACCATGGCGATCAAGTCCGACAACAAAACAAGAAGTACGAACACG
EX762206       --> ........................gtgctgggagAAGAAGTACGAACACG
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               201    -    251
UN13999        --> GCGAGATCGCCATCTGGCAGAAGAGAGTCAACGACGAGGCGTGCCGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> GCGAGATCGCCATCTGGCAGAAGAGAGTCAACGACGAGGCGTGCCGCTCA
EX762206       --> GCGAGATCGCCATCTGGCAGAAGAGAGTCAACGACGAGGCGTGCCGCTCG
FD947274       --> .....................................GGCGTGCCGCTCA
FD552035       --> ..................................................
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               251    -    301
UN13999        --> AGACAAGACGACCCTAGAGCCAACTTCTGCAAAACCACTGATGACACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> AGACAAGACGACCCTAGAGCCAACTTCTGCAAAACCACTGATGACACCGA
EX762206       --> AGACAAGACGACCCTAGAGCCAACTTCTGCAAAACCACTGATGACACCGA
FD947274       --> AGACAAGACGACCCTATAGCCAACTTCTGCAAAACCACTGATGACACCGA
FD552035       --> ...............gGAGCCAACTTCTGCAAAACCACTGATGACACCGA
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               301    -    351
UN13999        --> TGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACGCCTTATCCCGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> TGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACGCCTTATCCCGAGA
EX762206       --> TGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACACCTTATCCCGAGA
FD947274       --> TGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACGCCTTATCCCGAGA
FD552035       --> TGACGTGTGGTACAAGAAAATGGAGGCGTGCATTACACCTTATCCCGAGA
EV565947       --> ..................................................
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               351    -    401
UN13999        --> CGAGCAGCTCTGACGAAGTGGCTGGAGGAGAGCTTCAGGTTTTCCCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ..................................................
EV571179       <-- ..................................................
EX766329       <-- ..................................................
FD566479       <-- ..................................................
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> CGAGCAGCTCTGACGAAGTGGCTGGAGGAGAGCTTCAGGTTTTCCCTGAT
EX762206       --> CGAGCAGCTCGGACGAAGTGGCTGGAGGAGAGCTTCAGGTGTTCCCTGAT
FD947274       --> CGAGCAGCTCTGACGAAGTGGCTGGAGGAGAGCTTCAGGTTTTCCCTGAT
FD552035       --> CGAGCAGCTCGGACGAAGTGGCTGGAGGAGAGCTTCAGGTGTTCCCTGAT
EV565947       --> ...................GGCTGGAGGAGAGCTTCAGGTTTTCCCTGAT
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               401    -    451
UN13999        --> AGGCTCAACGCGGTGCCGCCTAGGATCTCTAGCGGTTCGGTCTCTGGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ....TCAACGCGGTGCCGC-TAGGATATCTAGCGGTTCGGTCTCTGGTGT
EV571179       <-- .......................GATCTCTAGCGGTTCGGTCTCTGGCGT
EX766329       <-- .......................GATCTCTAGCGGCTCGGTCTCTGGCGT
FD566479       <-- ...........................TCTAGTGGTTCGGTCTCTGGTGT
FD974818       <-- ..................................................
EY909729       <-- ..................................................
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> AGGCTCAACGCGGTGCCGCCTAGGATCTCTAGCGGTTCGGTCTCTGGCGT
EX762206       --> AGGCTCAACGCGGTGCCGCCTAGGATATCTAGCGGTTCGATCTCTGGTGT
FD947274       --> AGGCTCAACGCGGTGCCGCCTAGGATCTCTAGCGGTTCGGTCTCTGGCGT
FD552035       --> AGGCTCAACGCGGTGCCGCCTAGGATATCTAGCGGTTCGGTCTCTGGTGT
EV565947       --> AGGCTCAACGCGGTGCCGCCTAGGATCTCTAGCGGTTCGGTCTCTGGCGT
FD978607       --> ..................................................
EY913509       --> ..................................................
FD948509       --> ..................................................

               451    -    501
UN13999        --> CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAACATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- CACGGCTGATGCGTATGAAGATGATAACAGACAGTGGAAGAAACATGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAGCATGTGA  Raphanus raphanistrum subsp. landra
EX766329       <-- CACGGCTGATGCGTATGAAGATGATAACAGACAGTGGAAGAAACATGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAGCATGTGA  Raphanus sativus var. oleiformis
FD974818       <-- ................gaaGATGATAACAGACAGTGGAAGAAACATGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- ..................................................  Raphanus sativus var. oleiformis
FD944279       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564031       --> CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAGCATGTGA  Raphanus sativus var. oleiformis
EX762206       --> CACGGCTGATGCGTATGAAGATGATAACAGACAGTGGAAGAAACATGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAGCATGTGA  Raphanus sativus cv Early Scarlet Globe
FD552035       --> CACGGCTGATGCGTATGAAGATGATAACAGACAGTGGAAGAAACATGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> CACGGCTGATGCGTATGAGGATGATAACAGACAGTGGAAGAAGCATGTGA  Raphanus raphanistrum subsp. landra
FD978607       --> ................gaaGATGATAACAGACAGTGGAAGAAACATGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN13999        --> AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- AGGCTTACAAGAGGATCAACAGTTTGATTGATACTGGGAGGTACCGTAAC
EV571179       <-- AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
EX766329       <-- AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
FD566479       <-- AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
FD974818       <-- AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
EY909729       <-- ..........GAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
EX762206       --> AGGCTTACAAGAGGATCAACAGTTTGATTGATACTGGGAGGTACCGTAAC
FD947274       --> ACGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
FD552035       --> AGGCTTACAAGAGGATCAACAGTTTGATTGATACTGGGAGGTACCGTAAC
EV565947       --> AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
FD978607       --> AGGCTTACAAGAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
EY913509       --> ..........GAGGATCAATAGTTTGATTGATACTGGGAGGTACCGTAAC
FD948509       --> ..............................................gAAC

               551    -    601
UN13999        --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAATC
EV571179       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
EX766329       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
FD566479       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
FD974818       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
EY909729       <-- ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
EX762206       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAATC
FD947274       --> ATCATGGACATGAAC...................................
FD552035       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAATC
EV565947       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
FD978607       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
EY913509       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC
FD948509       --> ATCATGGACATGAACGCAGGGTTTGGTGGGTTTGCTGCTGCTTTGGAGTC

               601    -    651
UN13999        --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EV571179       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EX766329       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
FD566479       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
FD974818       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EY909729       <-- ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> ACAGAAGCTTTGGGTTATGAATGTCGTTCCAACCATTGCTGAGAAGAATA
EX762206       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
FD947274       --> ..................................................
FD552035       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EV565947       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
FD978607       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
EY913509       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA
FD948509       --> ACAGAAGCTTTGGGTTATGAATGTTGTTCCAACCATTGCTGAGAAGAATA

               651    -    701
UN13999        --> GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EV571179       <-- GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EX766329       <-- GGCTTGGTGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
FD566479       <-- GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
FD974818       <-- GGCTTGGTGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EY909729       <-- GGCTTGGTGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EX766529       <-- ..................................................
FD567612       <-- ..................................................
FD944279       <-- ..................................................
FD564031       --> GGCTTGGAGTTGTGTATGAACGAG-ACTCATTGGTATCTACCATGACTGG
EX762206       --> GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
FD947274       --> ..................................................
FD552035       --> GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EV565947       --> GGCTTGGAGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
FD978607       --> GGCTTGGTGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
EY913509       --> GGCTTGGTGTTGTGTATGAACGAGGACTCATTGGTATCTACCATGACTGG
FD948509       --> GGCTTGGAGTTGTGTATGAACGAGGACT--TTGGTATCTACCATGACTGG

               701    -    751
UN13999        --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATCCATGCGAA  Raphanus raphanistrum subsp. landra
EX766329       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATCCATGCGAA  Raphanus sativus var. oleiformis
FD974818       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- ....AGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- ..................................................  Raphanus sativus var. oleiformis
FD944279       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564031       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATCCATGCGA-  Raphanus sativus var. oleiformis
EX762206       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD552035       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATCCATGCGAA  Raphanus raphanistrum subsp. landra
FD978607       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATTCATGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> TGCGAGGCTTTCTCGACATACCCGAGAACATATGACTTAATCCATGCGAA  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN13999        --> CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCAGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGTAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. landra
EX766329       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- CCATTTTTTCAGTCTTTACAAGAACAAGTGTAATGCGGAAGACATTTTTC  Raphanus sativus var. oleiformis
FD974818       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCAGAAGACATTTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- ...ttttTTCAGTCTTTACAAGAACAAGTGTAATGCGGAAGACATTCTTC  Raphanus sativus var. oleiformis
FD944279       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564031       --> CCATCTCTTCAGTCTTTACAAGAACAAGTG-TATGCGGAAGACA......  Raphanus sativus var. oleiformis
EX762206       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCAGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD552035       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCAGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGTAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. landra
FD978607       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGCAATGCGGAAGACATTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> CCATCTCTTCAGTCTTTACAAGAACAAGTGTAATGCG-AAGACATTCTTC  Raphanus sativus cv Early Scarlet Globe

               801    -    851
UN13999        --> TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TGGAGATGGATAGGATTCTGCGTCCAGGAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCCGGGAC  Raphanus raphanistrum subsp. landra
EX766329       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- TGGAGATGGATAGGACTCTGCGTCCAGAAGGAGCGGTTATAATCCGGGAC  Raphanus sativus var. oleiformis
FD974818       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCCGGGAC  Raphanus sativus var. oleiformis
FD944279       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564031       --> ..................................................  Raphanus sativus var. oleiformis
EX762206       --> TGGAGATGGATAGGATTCTGCGTCCAGAAAGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD552035       --> TGGAGATGGATAGGATTCTGCGTCCAGGAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCCGGGAC  Raphanus raphanistrum subsp. landra
FD978607       --> TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCAGGGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> TGGAGATGGATAGGATTCTGCGTCCAGAAGGAGCGGTTATAATCCGGGAC  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN13999        --> GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATTTCTGGAATGAGATG
EV571179       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
EX766329       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
FD566479       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATTTCTGGAATGAGATG
FD974818       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCCGGAATGAGATG
EY909729       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
EX766529       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
FD567612       <-- GATGTTGACACATTGATGAAGGTGAAGGGAATCATTTCTGGAATGAGATG
FD944279       <-- ........................................GAATGAGATG
FD564031       --> ..................................................
EX762206       --> GATGTTGACACATTGATGAAG.............................
FD947274       --> ..................................................
FD552035       --> GATGTTGACACATTGATGAAAGTG..........................
EV565947       --> GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
FD978607       --> GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCCGGAATGAGATG
EY913509       --> GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG
FD948509       --> GATGTTGACACATTGATGAAGGTGAAGGGAATCATCTCTGGAATGAGATG

               901    -    951
UN13999        --> GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- GGACTCGAAGATGGTTGACCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. landra
EX766329       <-- GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- GGACTCGAAGATGGTTGACCATTAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus sativus var. oleiformis
FD974818       <-- GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- GGACTCGAAGATGGTTGATCATGTGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- GGACTCGAAGATGGTTGACCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus sativus var. oleiformis
FD944279       <-- GGACTCGAAGATGGTTGACCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus sativus cv Early Scarlet Globe
FD564031       --> ..................................................  Raphanus sativus var. oleiformis
EX762206       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD552035       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> GGACTCGAAGATGGTTGACCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. landra
FD978607       --> GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> GGACTCGAAGATGGTTGATCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> GGACTCGAAGATGGTTGACCATGAGGATGGTCCTTTGGTTCCTGAGAAGG  Raphanus sativus cv Early Scarlet Globe

               951    -   1001
UN13999        --> TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
EV571179       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
EX766329       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD566479       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD974818       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
EY909729       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
EX766529       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD567612       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD944279       <-- TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD564031       --> ..................................................
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD978607       --> TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
EY913509       --> TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC
FD948509       --> TTTTGATTGCTGTGAAGCAGTATTGGGTCACCAACTCCACTGCGTCTCAC

               1001   -   1051
UN13999        --> TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TGAAGTAATGTTTTACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
EV571179       <-- TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
EX766329       <-- TGAAGTAATGTTT-AC----TACCCGGTGTGAGTGACCTGACATTTTGAT
FD566479       <-- TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTTAT
FD974818       <-- TGAAGTAATGTTT-AC----TACCCGGTGTGAGTGACCTGACATTTTGAT
EY909729       <-- TGAAGTAATGTTT-AC----TACCCGGTGTGAGTGACCTGACATTTTGAT
EX766529       <-- TGAAGTAATGTTTTACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
FD567612       <-- TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
FD944279       <-- TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
FD564031       --> ..................................................
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT
FD978607       --> TGAAGTAATGTTT-ACTAC----CCGGTGTGAGTGACCTGACATTTTGAT
EY913509       --> TGAAGTAATGTTT-ACTAC----CCGGTGTGAGTGACCTGACATTTTGAT
FD948509       --> TGAAGTAATGTTT-ACTACGTACCCGGTGTGAGTGACCTGACATTTTGAT

               1051   -   1101
UN13999        --> CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTTTGTTACCACTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTTTGTTACCACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV571179       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus raphanistrum subsp. landra
EX766329       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTCTGTTAC-ACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566479       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus sativus var. oleiformis
FD974818       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTCTGTTAC-ACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909729       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTCTGTTAC-ACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766529       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTTTGTTACCACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD567612       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus sativus var. oleiformis
FD944279       <-- CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus sativus cv Early Scarlet Globe
FD564031       --> ..................................................  Raphanus sativus var. oleiformis
EX762206       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD947274       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD552035       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV565947       --> CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus raphanistrum subsp. landra
FD978607       --> CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTCTGTTAC-ACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY913509       --> CTTATGATAGAGCTTTCGAGCTACATTCTCTGTCTCTGTTAC-ACTTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD948509       --> CTTATGATAGAGCTTTCGAGCTACATTCTCTCTCTTTGTTACCACTTTTA  Raphanus sativus cv Early Scarlet Globe

               1101   -   1151
UN13999        --> TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTCTG
EV571179       <-- TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
EX766329       <-- TAAGTACAATCTCTATTTATTAA-TGTAATAGTTTATATTTGTTTCTTTG
FD566479       <-- TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
FD974818       <-- TAAGTACAATCTCTATTTATTAA-TGTAATAGTTTATATTTG........
EY909729       <-- TAAGTACAATCTCTATTTATTAA-TGTAATAGTTTATATTTGTTTCTTTG
EX766529       <-- TAAGTACAA.........................................
FD567612       <-- TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
FD944279       <-- TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
FD564031       --> ..................................................
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG
FD978607       --> TAAGTACAATCTCTATTTATTAA...........................
EY913509       --> TAAGTACAATCTCTATTTATTAA-TGTAATAGTTTATATTTGTTTCTTTG
FD948509       --> TAAGTACAATCTCTATTTATTAAATGTAATAGTTTATATTTGTTTCTTTG

               1151   -   1201
UN13999        --> TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- TCCCAAAAGCTTGGAACTTTTATGATGTATCATTGAATTATCAACTTTAT
EV571179       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
EX766329       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
FD566479       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
FD974818       <-- ..................................................
EY909729       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
EX766529       <-- ..................................................
FD567612       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
FD944279       <-- TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
FD564031       --> ..................................................
EX762206       --> ..................................................
FD947274       --> ..................................................
FD552035       --> ..................................................
EV565947       --> TCCC..............................................
FD978607       --> ..................................................
EY913509       --> TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT-T
FD948509       --> TCCCAAAAGCTTGGAACTTTTGTGGTGTATCATTGAATTATCAACTTT..

               1201   -   1251
UN13999        --> -AT-AATGACCGAGTTATGCTTCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547869       <-- AATCAATCACTGAGTTATGCTTCAAGC
EV571179       <-- -AT-AATGACCGAGTTATGCTTC....
EX766329       <-- -AT-AATGACCGAGTTATGCTTCAAGt
FD566479       <-- -AT-AATGACCGAGTTATGCTTCAAGC
FD974818       <-- ...........................
EY909729       <-- -AT-AATGACC................
EX766529       <-- ...........................
FD567612       <-- -AT-AATGACCGAGTTATGCTTCAAGC
FD944279       <-- -AT........................
FD564031       --> ...........................
EX762206       --> ...........................
FD947274       --> ...........................
FD552035       --> ...........................
EV565947       --> ...........................
FD978607       --> ...........................
EY913509       --> -AT-AATGACC................
FD948509       --> ...........................