1      -     51
UN14120        --> ATAATTATATATGTATATATATTATACTTTTTGACTGGAATTTATTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ...................................tgaAATTTATTCTGA
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> ATAATTATATATGTATATATATTATACTTTTTGACTGGAATTTATTCTGA
EV541800       --> ................................GACTGGA-TTTATTCTGA
EW728223       --> ................................GACTGGA-TTTATTCTGA
EX892431       --> ................................GACTGGAATTTATTCTGA
FD529546       --> ................................GACTGGAATTTATTCTGA
FD960179       --> .................................ACTGGAATTTATTCTGA
EX893644       --> ................................ggCTGGAATTTATTCTGA
EY921010       --> ................................ggCTGGAATTTATTCTGA
FD552768       --> ..............................................CTGA
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               51     -    101
UN14120        --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
EV541800       --> TTGTTTTAAATATTATATTTTGTTCTAAAAACAAGGTTGTTCGAAAAAAA
EW728223       --> TTGTTTTAAATATTATATTTTGTTCTAAAAACAAGGTTGTTAGAAAAAAA
EX892431       --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
FD529546       --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
FD960179       --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
EX893644       --> TTGTTTTAAATATTATATTTTGTTCTAGAAACAAGTTTGTTCGAAAAAAA
EY921010       --> TTGTTTTAAATATTATATTTTGTTCTAAAAACAAGTTTGTTCGAAAAAAA
FD552768       --> TTGTTTTAAATATTATATTTTGCTCTAGAAACAAGTTTGTTCGAAAAAAA
EY934910       --> ..............................ACAAGGTTGTTAGAAAAAAA
FD566506       --> ..............................ACAAGTTTGTTCGAAAAAAA
FY444697       --> ...................................TTTGTTCGAAAAAAA
EY903567       --> .......................................cgaaAAAAAAA
EW719461       --> ..................................................
FD959102       --> ..................................................

               101    -    151
UN14120        --> AA-----A-CATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- AA-----AACATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> AA-----A-CATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
EV541800       --> AAGAAAAA-CATTCTCAATTGAAACAAAAAAA--CAAATGCAACACAAGA
EW728223       --> AA-------CATTCTCAATTGAAACAAAAAAA--CAAATGCAACACAAGA
EX892431       --> AA-----AACATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
FD529546       --> AA-----A-CATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
FD960179       --> A--------CATTCTCAATAAAAACAAAAAAA--CAAATGCAACACAAGA
EX893644       --> AA-------CATCCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
EY921010       --> AA-----A-CATTCTCAATAAAAACAAAAAAA--CAAATGCAACACAAGA
FD552768       --> AA-------CATTCTCAATAGAAACAAAAAAAAACAAATGCAACACAAGA
EY934910       --> AA-----A-CATTCTCAATTGAAACAAAAAAA--CAAATGCAACACAAGA
FD566506       --> AA-------CATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
FY444697       --> AA-----A-CATTCTCAATAGAAACACATTAA--CAAATGCAACACAAGA
EY903567       --> AA-----A-CATTCTCAATAGAAACAAAAAAA--CAAATGCAACACAAGA
EW719461       --> ..................................................
FD959102       --> ..................................................

               151    -    201
UN14120        --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EY925556       <-- ....................................GAGGTCTT-GAAAA
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EV541800       --> AAAAGAGTTTCCCCAGTTACTTAAAAGTCTCTATTTGAGGTCTTCGAAAA
EW728223       --> AAAAGAGTTTCCGCAGTTACATAA--GTCTCTATTTGAGGTCTTTGAAAA
EX892431       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
FD529546       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
FD960179       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EX893644       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EY921010       --> AAAAGAGTTTCCGCAGTTACTTAA-AGTCTCTATTTGAGGTCTTTGAAAA
FD552768       --> AAAAGAGTTTCCGCAGTTACTTAA-AGTCTCTATTTGAGGTCTTTGAAAA
EY934910       --> AAAAGAGTTTCCGCAGTTACATAA--GTCTCTATTTGAGGTCTTTGAAAA
FD566506       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
FY444697       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EY903567       --> AAAAGAGTTTCCGCAGTTACTTAA--GTCTCTATTTGAGGTCTTTGAAAA
EW719461       --> ..................................................
FD959102       --> ..................................................

               201    -    251
UN14120        --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EY925556       <-- CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EV569931       <-- .......................ATTGAATTCAAGCCATTGTCAACATAG
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EV541800       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EW728223       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EX892431       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
FD529546       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
FD960179       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EX893644       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EY921010       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAA
FD552768       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EY934910       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
FD566506       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
FY444697       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EY903567       --> CTGGACTGTCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
EW719461       --> ........TCGATGGCAACACCCATTGAATTCAAGCCATTGTCAACATAG
FD959102       --> ..................................................

               251    -    301
UN14120        --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EY925556       <-- ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EV569931       <-- ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EV541800       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCAGC
EW728223       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EX892431       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
FD529546       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
FD960179       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EX893644       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EY921010       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
FD552768       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EY934910       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
FD566506       --> ATGGTTGCACCAGTTATGGCAGAGGCCAGTGGAGATACCAAGAAGGCTGC
FY444697       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EY903567       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
EW719461       --> ATGGTTGCACCAGTTATGGCAGAGGCCAATGGAGATACCAAGAAGGCTGC
FD959102       --> .........................CCAATGGAGATACCAAGAAGGCTGC

               301    -    351
UN14120        --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EY925556       <-- TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EV569931       <-- TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EW714051       <-- ........................CAATGTTTTCTGAACAGGCGCATTAT
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EV541800       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EW728223       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EX892431       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FD529546       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FD960179       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EX893644       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EY921010       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FD552768       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAC
EY934910       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FD566506       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FY444697       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
EY903567       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGGACAGGCGCATTAT
EW719461       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT
FD959102       --> TGCATTCCCAACTTCATCTGCGGTCAATGTTTTCTGAACAGGCGCATTAT

               351    -    401
UN14120        --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EY925556       <-- TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EV569931       <-- TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EW714051       <-- TGTATGAATACTCAATCATGGTGTCTATGGACCCAATTGCTTTTGCTGCT
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EV541800       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EW728223       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EX892431       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCCGCT
FD529546       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
FD960179       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EX893644       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EY921010       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
FD552768       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EY934910       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
FD566506       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
FY444697       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EY903567       --> TGTACGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
EW719461       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT
FD959102       --> TGTATGAATACTCAATCATGGTGTCTATGAACCCAATTGCTTTTGCTGCT

               401    -    451
UN14120        --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EY925556       <-- CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EV569931       <-- CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCTTAATGTTTTGTTT
EW714051       <-- CGGCTTCCCAAAGGAC-TGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EW714050       <-- ...........AGGACGTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
FY454370       <-- ..............................................GTTT
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EV541800       --> CGGCTTCCCAAAGGAACTGCAAAGATGGTGTTGACCCTAATGTTTTGTTT
EW728223       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EX892431       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGGTT
FD529546       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
FD960179       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EX893644       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EY921010       --> CGGCTTCCCAAAGGACCTGCAGAAATGGTGTTGACCCTAATGTTTTGTTT
FD552768       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTGATGTTTTGTTT
EY934910       --> CGGCTTCCCAAAGGACCTGCAGAAATGGTGTTGACCCTAATGTTTTGTTT
FD566506       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
FY444697       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EY903567       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
EW719461       --> CGGCTTCCCAAAGGACCTGCAGAGATGGTGTTGACCCTAATGTTTTGTTT
FD959102       --> CGGCTTCCCAAAGGACCTGCAAAAATGGTGTTGACCCTAATGTTTTGTTT

               451    -    501
UN14120        --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- CCTTCCAcc.........................................
EY925556       <-- CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EV569931       <-- CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EW714051       <-- CTTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EW714050       <-- CTTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FY454370       <-- CCTCCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FY432165       <-- ..................................................
FY439341       <-- ..................................................
FY447967       <-- ..................................................
FY448987       <-- ..................................................
FY449234       <-- ..................................................
FY449520       <-- ..................................................
EW714633       <-- ..................................................
FD962590       <-- ..................................................
EX764171       <-- ..................................................
FY438234       <-- ..................................................
FY447031       <-- ..................................................
EX888507       <-- ..................................................
EV549272       <-- ..................................................
EW723709       <-- ..................................................
FD556458       <-- ..................................................
FY447015       <-- ..................................................
EV537602       <-- ..................................................
EX755551       <-- ..................................................
EY938870       <-- ..................................................
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EV541800       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EW728223       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EX892431       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FD529546       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FD960179       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EX893644       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTACCACTCTCTAGTGCGGCTT
EY921010       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FD552768       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EY934910       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FD566506       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FY444697       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EY903567       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
EW719461       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT
FD959102       --> CCTTCCAGCTTCAAATGCAAGCACCCGTGTATCACTCTCTAGTGCGGCTT

               501    -    551
UN14120        --> TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. landra
EV569931       <-- TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. landra
EW714051       <-- TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
EW714050       <-- TCGCGGAACTCATACCCTCCACCCATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
FY454370       <-- TCGCAGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus cv GSK3-1
FY432165       <-- ..............................AGGAATGATCCTT-CAGAAA  Raphanus sativus cv GSK3-1
FY439341       <-- ............................................CAGAA-  Raphanus sativus cv GSK3-1
FY447967       <-- ..............................................GAA-  Raphanus sativus cv GSK3-1
FY448987       <-- ..............................................GAA-  Raphanus sativus cv GSK3-1
FY449234       <-- ...............................................AA-  Raphanus sativus cv GSK3-1
FY449520       <-- ..................................................  Raphanus sativus cv GSK3-1
EW714633       <-- ..................................................  Raphanus sativus var. oleiformis
FD962590       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX764171       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447031       <-- ..................................................  Raphanus sativus cv GSK3-1
EX888507       <-- ..................................................  Raphanus sativus var. oleiformis
EV549272       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY447015       <-- ..................................................  Raphanus sativus cv GSK3-1
EV537602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ..................................................  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- ..................................................  Raphanus sativus var. oleiformis
FD964055       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> TCGCAGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus cv GSK3-1
EV541800       --> TCGCAAAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus cv Early Scarlet Globe
EX892431       --> TCGCAGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
FD529546       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. maritimus
FD960179       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGGTCCTTTCAGAA-  Raphanus raphanistrum subsp. maritimus
EX893644       --> TCGCAGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
EY921010       --> TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. landra
FD552768       --> TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. landra
EY934910       --> TCGCGGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus cv Early Scarlet Globe
FD566506       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
FY444697       --> TCGCAGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus cv GSK3-1
EY903567       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus sativus var. oleiformis
FD959102       --> TCGCCGAACTCATACC-TCCACC-ATACCCAGGAATGATCCTTTCAGAA-  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN14120        --> GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus raphanistrum subsp. landra
EV569931       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTCCATAATTGGCA  Raphanus raphanistrum subsp. landra
EW714051       <-- GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
EW714050       <-- GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
FY454370       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY432165       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY439341       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY447967       <-- GCAATGTAAGTAAGAGATATAGAAGCGCTCCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY448987       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY449234       <-- GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
FY449520       <-- ..................ATAGAAGCGCCTCCCTGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
EW714633       <-- ..................................GGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
FD962590       <-- ................................cctGGTTCAT--ATGGCA  Raphanus raphanistrum subsp. maritimus
EX764171       <-- ....................................GTTCATAATTGGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447031       <-- ..................................................  Raphanus sativus cv GSK3-1
EX888507       <-- ..................................................  Raphanus sativus var. oleiformis
EV549272       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY447015       <-- ..................................................  Raphanus sativus cv GSK3-1
EV537602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ..................................................  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- ..................................................  Raphanus sativus var. oleiformis
FD964055       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
EV541800       --> GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv Early Scarlet Globe
EX892431       --> GCAATGTAAGTAAGAAATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
FD529546       --> GCAATGTAAGTAAGCGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus raphanistrum subsp. maritimus
FD960179       --> GCAATGTAAGTAAGCGACATAGA...........................  Raphanus raphanistrum subsp. maritimus
EX893644       --> GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
EY921010       --> GCAATGTAAGTA......................................  Raphanus raphanistrum subsp. landra
FD552768       --> GCAATGTAAGTAAGAGATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus raphanistrum subsp. landra
EY934910       --> GCAATGTAAGTAAGAAATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv Early Scarlet Globe
FD566506       --> GCAATGTAAGTAAGAGATATAGAAGCACCCCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
FY444697       --> GCAATGTAAGTAAGAGATATAGAAGCGCCTCC-TGGGTTCATAATTGGCA  Raphanus sativus cv GSK3-1
EY903567       --> GCAATGTAAGTAAGCGATATA.............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> GCAATGTAAGTAAGAAATATAGAAGCACCTCC-TGGGTTCATAATTGGCA  Raphanus sativus var. oleiformis
FD959102       --> GCAATGTAAGTAAGCGATATAGAA..........................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN14120        --> GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus raphanistrum subsp. landra
EV569931       <-- GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus raphanistrum subsp. landra
EW714051       <-- GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus var. oleiformis
EW714050       <-- GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus var. oleiformis
FY454370       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY432165       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY439341       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY447967       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY448987       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY449234       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY449520       <-- GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
EW714633       <-- GGAAATGC-TGAGGAGGGAAACAAA-GAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus var. oleiformis
FD962590       <-- GGAA-TG-CTGAGGAG--GAACAAA-GAGT-ACTCGA-GCAGAGATAGCA  Raphanus raphanistrum subsp. maritimus
EX764171       <-- GGAAATGCGTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- .........TGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
FY447031       <-- ................GGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
EX888507       <-- ................................................CA  Raphanus sativus var. oleiformis
EV549272       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY447015       <-- ..................................................  Raphanus sativus cv GSK3-1
EV537602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ..................................................  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- ..................................................  Raphanus sativus var. oleiformis
FD964055       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
EV541800       --> GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv Early Scarlet Globe
EX892431       --> GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAAATAGCA  Raphanus sativus var. oleiformis
FD529546       --> GGAAATGCCTGAGGGGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> GGAAATGCCTGAGGAGGGAAACAAAaga......................  Raphanus raphanistrum subsp. landra
EY934910       --> GGAAATGCCTGAGGAGGGAAACAAAaga......................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus var. oleiformis
FY444697       --> GGAAATGCCTGAGGAGGGAAACAAACGAGTAACTCGAAGCAGAGATAGCA  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> GGAAATGCCTGAGGAGGGAAACAAAAGAGTAACTCGAAGCAGAAATAGCA  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN14120        --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. landra
EV569931       <-- GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. landra
EW714051       <-- GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus var. oleiformis
EW714050       <-- GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus var. oleiformis
FY454370       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY432165       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY439341       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY447967       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY448987       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY449234       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY449520       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTATGCTAACCTCTGG  Raphanus sativus cv GSK3-1
EW714633       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAAC-TCTGG  Raphanus sativus var. oleiformis
FD962590       <-- GCGAG-TAG-CTTTTCTTGATGTCTCCAGAAGAGGTT-GCTAAC-TCTGG  Raphanus raphanistrum subsp. maritimus
EX764171       <-- GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
FY447031       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTACCTTCTGG  Raphanus sativus cv GSK3-1
EX888507       <-- GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAAC-TCTGG  Raphanus sativus var. oleiformis
EV549272       <-- ..............TCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ..............TCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ..........................cAGAAGAGGTTTGCTAAC-TCTGG  Raphanus raphanistrum subsp. landra
FY447015       <-- ..................................................  Raphanus sativus cv GSK3-1
EV537602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ..................................................  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- ..................................................  Raphanus sativus var. oleiformis
FD964055       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
EV541800       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv Early Scarlet Globe
EX892431       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus var. oleiformis
FD529546       --> GCGAGGTAGCCTTTTCTTGATGTCTCCAGAAGAGGTTTGCTAACCTCTGG  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> GCGAGGTAGCCCTTTCTTGATGT...........................  Raphanus sativus var. oleiformis
FY444697       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> GCGAGGTAGCCCTTTCTTGATGTCTCTAGAAGAGGTTTGCTAACCTCTGG  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN14120        --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EV569931       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EW714051       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EW714050       <-- TCC-ATTTGCAAAGTGAGTGGA............................
FY454370       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY432165       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY439341       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY447967       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY448987       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY449234       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY449520       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EW714633       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FD962590       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGT-CCGAAATCTTT
EX764171       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY438234       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FY447031       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EX888507       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EV549272       <-- TCCCATTTGCAA-GTGAGTGGACAAGAATGTCAATGGT-CCGAAATCTTT
EW723709       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGGTCCGAAATCTTT
FD556458       <-- TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGT-CCGAAATCTTT
FY447015       <-- .....................ACAAGAATGTCAATGGTTCCGAAATCTTA
EV537602       <-- ........................................CGAAATCTTT
EX755551       <-- .........................................GAAATCTTT
EY938870       <-- ..............................................tcTT
FD939217       <-- ..................................................
EX890050       <-- ..................................................
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EV541800       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EW728223       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EX892431       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FD529546       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FD960179       --> ..................................................
EX893644       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAA......
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
EY903567       --> ..................................................
EW719461       --> TCC-ATTTGCAA-GTGAGTGGACAAGAATGTCAATGGTTCCGAAATCTTT
FD959102       --> ..................................................

               751    -    801
UN14120        --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EV569931       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EW714051       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EW714050       <-- ..................................................
FY454370       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY432165       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY439341       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY447967       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY448987       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY449234       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY449520       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EW714633       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FD962590       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTT-GATGATCCAGCAT
EX764171       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY438234       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FY447031       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EX888507       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EV549272       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EW723709       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAATTTGATGATCCAGCAT
FD556458       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTACAGTTTGATGATCCAGCAT
FY447015       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EV537602       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EX755551       <-- TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EY938870       <-- TCTCACACATTCAGCAGCTTC-TGTACTGTCCAGTTTGATGATCCAGCAT
FD939217       <-- ..TCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EX890050       <-- ...........................................CCAGCAT
FD562652       <-- ..................................................
FD964055       <-- ..................................................
FY435793       <-- ..................................................
EY907691       <-- ..................................................
FY436214       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EV541800       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EW728223       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAATTTGATGATCCAGCAT
EX892431       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FD529546       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
EY903567       --> ..................................................
EW719461       --> TCTCACACATTCAGCAGCTTCCTGTACTGTCCAGTTTGATGATCCAGCAT
FD959102       --> ..................................................

               801    -    851
UN14120        --> ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. landra
EV569931       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. landra
EW714051       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
EW714050       <-- ..................................................  Raphanus sativus var. oleiformis
FY454370       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY432165       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY439341       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY447967       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY448987       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY449234       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY449520       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
EW714633       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
FD962590       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. maritimus
EX764171       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
FY447031       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
EX888507       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
EV549272       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. landra
FY447015       <-- ATCGGTTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
EV537602       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
EX890050       <-- ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGGGATTGTCAA  Raphanus sativus var. oleiformis
FD562652       <-- ...........................GGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
FD964055       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
EV541800       --> ATCG-CTTATTCGCTTTCACATCCTCAGGCACA.................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> ATCG-TTTATTCGCTTTCACATCCTCGGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv Early Scarlet Globe
EX892431       --> ATCG-CTTATTCGCTTTCACATCC..........................  Raphanus sativus var. oleiformis
FD529546       --> ATCG-CTTATTCGCTTTCACATCCTCAG-CACATCTTCAG--ATTGTCAA  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> ..................................................  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> ..................................................  Raphanus sativus var. oleiformis
FY444697       --> ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> ATCG-CTTATTCGCTTTCACATCCTCAGGCACATCTTCAGG-ATTGTCAA  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN14120        --> ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATgtttcctgagggagcctcc  Raphanus raphanistrum subsp. landra
EV569931       <-- ACACAGCATCCAAAGGATAGACCTTTTTAc....................  Raphanus raphanistrum subsp. landra
EW714051       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus var. oleiformis
EW714050       <-- ..................................................  Raphanus sativus var. oleiformis
FY454370       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY432165       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY439341       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY447967       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY448987       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY449234       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY449520       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
EW714633       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus var. oleiformis
FD962590       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. maritimus
EX764171       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
FY447031       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
EX888507       <-- ACACAGCGTCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus var. oleiformis
EV549272       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. landra
FY447015       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
EV537602       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- ACACAGCATCCAAAGGATAGACCTTTTTAACCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus var. oleiformis
EX890050       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus var. oleiformis
FD562652       <-- ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus var. oleiformis
FD964055       <-- .......................TTTTTAATCTCCATCAATGACCCGTCA  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> ACACAGCATC........................................  Raphanus sativus cv GSK3-1
EV541800       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCGTCA  Raphanus sativus cv Early Scarlet Globe
EX892431       --> ..................................................  Raphanus sativus var. oleiformis
FD529546       --> ACACAGCATCCAAAGGATAGACCTTTTTA-TCT-CATCAATGACCCGTCA  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> ..................................................  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> ..................................................  Raphanus sativus var. oleiformis
FY444697       --> ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGAACCGTCA  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> ACACAGCATCCAAAGGATAGACCTTTTTAATCTCCATCAATGACCCG...  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN14120        --> GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EW714050       <-- ..................................................
FY454370       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY432165       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY439341       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY447967       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY448987       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY449234       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY449520       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EW714633       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FD962590       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTTAGGCTCGTCTCAAA
EX764171       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY438234       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY447031       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EX888507       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EV549272       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EW723709       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FD556458       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY447015       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EV537602       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGCCTCAGGCTCGTCTCAAA
EX755551       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EY938870       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FD939217       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
EX890050       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FD562652       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FD964055       <-- GGCAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAGGCTCGTCTCAAA
FY435793       <-- ...............................................AAA
EY907691       <-- ..................................................
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> G-CAGCACGCGTGACTGGTCAAATTTTCCACGTCTCAG-CTCGTCTCAAA
EX892431       --> ..................................................
FD529546       --> G-CAGCACGCGTGACTG.................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> GGCAGCACGCGTGACTGGTC..............................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               951    -   1001
UN14120        --> AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGTACCAGCA
EW714050       <-- ..................................................
FY454370       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY432165       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY439341       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY447967       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY448987       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY449234       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY449520       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EW714633       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FD962590       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EX764171       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY438234       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY447031       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EX888507       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EV549272       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EW723709       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FD556458       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY447015       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EV537602       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EX755551       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EY938870       <-- AATGTTAAGTGCAGGAACCCATGTACCAA-CCAATATTTCAGCACCAGCA
FD939217       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EX890050       <-- AATGTTAAGTGCAGGAACCCATGTCCCAAACCAATATTTCAGCACCAGCA
FD562652       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FD964055       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
FY435793       <-- AATGTTAAGTGCAGGAACCCATGTCCCAA-CCAATATTTCAGCACCAGCA
EY907691       <-- ..................................................
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> Atg...............................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1001   -   1051
UN14120        --> GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EW714050       <-- ..................................................
FY454370       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY432165       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY439341       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY447967       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY448987       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY449234       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY449520       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EW714633       <-- GCAGCAAGAGATTTGGCTATGGCCCAG-CCATATCCATTATCATCAGCAA
FD962590       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCCTATCCATTATCATCAGCAA
EX764171       <-- G---CAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY438234       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY447031       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EX888507       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCGGCAA
EV549272       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EW723709       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FD556458       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY447015       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EV537602       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EX755551       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EY938870       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FD939217       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EX890050       <-- GCAGCAAGAGATTTGGCTATGGCCCAAACCATATCCATTATCATCAGCAA
FD562652       <-- GCAGCAAGAGATTTGGCTATGGCCCAG-CCATATACATTATCATCAGCAA
FD964055       <-- G---CAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
FY435793       <-- GCAGCAAGAGATTTGGCTATGGCCCAA-CCATATCCATTATCATCAGCAA
EY907691       <-- ..................................................
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1051   -   1101
UN14120        --> -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569931       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714051       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus var. oleiformis
EW714050       <-- ..................................................  Raphanus sativus var. oleiformis
FY454370       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY432165       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY439341       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY447967       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY448987       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY449234       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY449520       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
EW714633       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus var. oleiformis
FD962590       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. maritimus
EX764171       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
FY447031       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
EX888507       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus var. oleiformis
EV549272       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. landra
FY447015       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
EV537602       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus var. oleiformis
EX890050       <-- ATACCAGCAAT.......................................  Raphanus sativus var. oleiformis
FD562652       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus sativus var. oleiformis
FD964055       <-- -TACCAGCAATGAAAGCCCTTTTCCCTCTCAAATCAATAGGAAGTCCAGA  Raphanus raphanistrum subsp. maritimus
FY435793       <-- -TACCAGCAATGAAAGCTCTTTTCCCTCTCAAATCAATAGGAAGTCCAAA  Raphanus sativus cv GSK3-1
EY907691       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> ..................................................  Raphanus sativus cv GSK3-1
EV541800       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892431       --> ..................................................  Raphanus sativus var. oleiformis
FD529546       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> ..................................................  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> ..................................................  Raphanus sativus var. oleiformis
FY444697       --> ..................................................  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> ..................................................  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN14120        --> AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EW714050       <-- ..................................................
FY454370       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY432165       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY439341       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY447967       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY448987       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY449234       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY449520       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EW714633       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCTTTTGTTGAAAAGGAAA
FD962590       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EX764171       <-- AGAAGCGCTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY438234       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY447031       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EX888507       <-- AGAAGCGTTGTTCTCGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EV549272       <-- AGAAGCGCTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EW723709       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FD556458       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY447015       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EV537602       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EX755551       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EY938870       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FD939217       <-- AGAAGCGTTGTTCTCGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EX890050       <-- ..................................................
FD562652       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCTTTTGTTGAAAAGGAAA
FD964055       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
FY435793       <-- AGAAGCGTTGTTCTGGCTGGATTCAGACATTGCCTTTGTTGAAAAGGAAA
EY907691       <-- ..................................................
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1151   -   1201
UN14120        --> AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- AACTCTTTTTAGAAGTTGGAAGc...........................
EW714050       <-- ..................................................
FY454370       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY432165       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY439341       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY447967       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY448987       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY449234       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY449520       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EW714633       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTT-TCAAACATCCGAGG
FD962590       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EX764171       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY438234       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY447031       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EX888507       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EV549272       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EW723709       <-- AACTCTTTTTAGAAGTTGGAAGAGAATTGTTGTTTCTCAAACATCCGAGG
FD556458       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY447015       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EV537602       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EX755551       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EY938870       <-- AACTCTTTTTAGAAGTTGGAAGAGAATTGTTGTTTCTCAAACATCCGAGG
FD939217       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EX890050       <-- ..................................................
FD562652       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FD964055       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY435793       <-- AACTCTTTTTAGAAGTTGGAAGAGAACTGTTGTTTCTCAAACATCCGAGG
EY907691       <-- ...................AAGAGAACTGTTGTTTCTCAAACATCCGAGG
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1201   -   1251
UN14120        --> TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569931       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714051       <-- ..................................................  Raphanus sativus var. oleiformis
EW714050       <-- ..................................................  Raphanus sativus var. oleiformis
FY454370       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY432165       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY439341       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY447967       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY448987       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY449234       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY449520       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
EW714633       <-- TTCGATAGAGGGCGAGTGCAAGCAAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus var. oleiformis
FD962590       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. maritimus
EX764171       <-- TTCGATAGAGGGCGAGTGCAAGCAAGTTTGTCCCc...............  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
FY447031       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
EX888507       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus var. oleiformis
EV549272       <-- TTCGATAGAGGGCGAGTGCAAGCAAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. landra
FY447015       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
EV537602       <-- TTCGATAGAGGACGAGTGCAAGCAAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- TTCGATAGAGGACGAGTGCAAGCAAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- TTCGATAGAGGGCGAGTGCAAGCAAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus var. oleiformis
FD964055       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. maritimus
FY435793       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus sativus cv GSK3-1
EY907691       <-- TTCGATAGAGGGCGAGTGCAAGCGAGTTTGTCCCATGATGCGTTCCTGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> ..................................................  Raphanus sativus cv GSK3-1
EV541800       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892431       --> ..................................................  Raphanus sativus var. oleiformis
FD529546       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> ..................................................  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> ..................................................  Raphanus sativus var. oleiformis
FY444697       --> ..................................................  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> ..................................................  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1251   -   1301
UN14120        --> ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY432165       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY439341       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY447967       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY448987       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY449234       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY449520       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EW714633       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FD962590       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAGACTTTGCTAGAGATGC
EX764171       <-- ..................................................
FY438234       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY447031       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EX888507       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EV549272       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EW723709       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FD556458       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FY447015       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EV537602       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EX755551       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EY938870       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FD939217       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EX890050       <-- ..................................................
FD562652       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
FD964055       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAGACTTTGCTAGAGATGC
FY435793       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAAACTTTGCTAGAGATGC
EY907691       <-- ATTGGCACCGACAATGCAGGTCCCTGCTTTAAAGACTTTGCTAGAGATGC
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1301   -   1351
UN14120        --> TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- TTGGCCTTATTGTAGCAAATg.............................
FY432165       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY439341       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY447967       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY448987       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY449234       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY449520       <-- TTGGCCTTATGGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCA..
EW714633       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCTGTCGCCGCCATT
FD962590       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EX764171       <-- ..................................................
FY438234       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY447031       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EX888507       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EV549272       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EW723709       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCTGTCGCCGCCATT
FD556458       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY447015       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EV537602       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTC.........
EX755551       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCGGCCGTCGCCGCCATT
EY938870       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCTGTCGCCGCCATT
FD939217       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGTCATT
EX890050       <-- ..................................................
FD562652       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCTGTCGCCGCCATT
FD964055       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY435793       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
EY907691       <-- TTGGCCTTATTGTAGCAAATTGCAAGCTTGAAGCTGCCGTCGCCGCCATT
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1351   -   1401
UN14120        --> CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................
EY925556       <-- ..................................................
EV569931       <-- ..................................................
EW714051       <-- ..................................................
EW714050       <-- ..................................................
FY454370       <-- ..................................................
FY432165       <-- CTCACGACCTTTCTAA..................................
FY439341       <-- CTCACGACCT........................................
FY447967       <-- CTCACGACCTT.......................................
FY448987       <-- CTCACGACCTTTCTAA..................................
FY449234       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
FY449520       <-- ..................................................
EW714633       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGAGAA
FD962590       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
EX764171       <-- ..................................................
FY438234       <-- CTCACGACCTTTCTAATGTTTT-TGAGAGAGCCTAGAGAG..........
FY447031       <-- CTCACGACCTTTCTAAT-TTTTCTGAGAGAGCCTAGAGAGAG........
EX888507       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
EV549272       <-- CTCACCACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
EW723709       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAGTGAGA--A
FD556458       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGAGAA
FY447015       <-- CTCACGACCTTTCTAA..................................
EV537602       <-- ..................................................
EX755551       <-- CTCACAACCTTTTTAATGTTTTTTGAGAGAGCCTAGAGAGAG--AGA--A
EY938870       <-- CTCACGACCTTTTTAATGTTTTCTGAGAGAGCCTAGAGAGAGTGAGA--A
FD939217       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
EX890050       <-- ..................................................
FD562652       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGAGAA
FD964055       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTA-AGAGAG--AGA--A
FY435793       <-- CTCACGACCTTTCTAAT-TTTTCTGAGAGAGCCTAGAGAGA.........
EY907691       <-- CTCACGACCTTTCTAATGTTTTCTGAGAGAGCCTAGAGAGAG--AGA--A
FY436214       --> ..................................................
EV541800       --> ..................................................
EW728223       --> ..................................................
EX892431       --> ..................................................
FD529546       --> ..................................................
FD960179       --> ..................................................
EX893644       --> ..................................................
EY921010       --> ..................................................
FD552768       --> ..................................................
EY934910       --> ..................................................
FD566506       --> ..................................................
FY444697       --> ..................................................
EY903567       --> ..................................................
EW719461       --> ..................................................
FD959102       --> ..................................................

               1401   -   1451
UN14120        --> AGAGGGGAGTCCGTTTGTTTGGTGTGAGCTGTGAAGTGATATGTAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY932343       <-- ..................................................  Raphanus sativus var. oleiformis
EY925556       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV569931       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW714051       <-- ..................................................  Raphanus sativus var. oleiformis
EW714050       <-- ..................................................  Raphanus sativus var. oleiformis
FY454370       <-- ..................................................  Raphanus sativus cv GSK3-1
FY432165       <-- ..................................................  Raphanus sativus cv GSK3-1
FY439341       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447967       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448987       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449234       <-- AGAGGGGAGT........................................  Raphanus sativus cv GSK3-1
FY449520       <-- ..................................................  Raphanus sativus cv GSK3-1
EW714633       <-- AGAGGGGAGTAGGTTTGTTTGGTGTccc......................  Raphanus sativus var. oleiformis
FD962590       <-- ATAGGGGAGTagcc....................................  Raphanus raphanistrum subsp. maritimus
EX764171       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY438234       <-- ..................................................  Raphanus sativus cv GSK3-1
FY447031       <-- ..................................................  Raphanus sativus cv GSK3-1
EX888507       <-- AGAGGGGAGTCC......................................  Raphanus sativus var. oleiformis
EV549272       <-- AGAGGGGAGTC.......................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW723709       <-- ATAGGGGAGTCC......................................  Raphanus sativus cv Early Scarlet Globe
FD556458       <-- AGAGGGGAGTCC......................................  Raphanus raphanistrum subsp. landra
FY447015       <-- ..................................................  Raphanus sativus cv GSK3-1
EV537602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755551       <-- AGTGGGGAGTCC......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY938870       <-- ATAGGGGAGTagcc....................................  Raphanus sativus cv Early Scarlet Globe
FD939217       <-- AGAGGGGAGTCC......................................  Raphanus sativus var. oleiformis
EX890050       <-- ..................................................  Raphanus sativus var. oleiformis
FD562652       <-- AGAGGGGAGTAGGTTTGTTTGGTGTGAGCTGTGAAGTGATATGTAAGAGG  Raphanus sativus var. oleiformis
FD964055       <-- ATAGGGGAGTC.......................................  Raphanus raphanistrum subsp. maritimus
FY435793       <-- ..................................................  Raphanus sativus cv GSK3-1
EY907691       <-- ATAGGGGAGTAGGTTTGTTTGGTGTGAGCTGTGAAGTGATATGTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY436214       --> ..................................................  Raphanus sativus cv GSK3-1
EV541800       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728223       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892431       --> ..................................................  Raphanus sativus var. oleiformis
FD529546       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD960179       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX893644       --> ..................................................  Raphanus sativus var. oleiformis
EY921010       --> ..................................................  Raphanus raphanistrum subsp. landra
FD552768       --> ..................................................  Raphanus raphanistrum subsp. landra
EY934910       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD566506       --> ..................................................  Raphanus sativus var. oleiformis
FY444697       --> ..................................................  Raphanus sativus cv GSK3-1
EY903567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719461       --> ..................................................  Raphanus sativus var. oleiformis
FD959102       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1451   -   1501
UN14120        --> AGATTCCC
                   ~~~~~~~~
EY932343       <-- ........
EY925556       <-- ........
EV569931       <-- ........
EW714051       <-- ........
EW714050       <-- ........
FY454370       <-- ........
FY432165       <-- ........
FY439341       <-- ........
FY447967       <-- ........
FY448987       <-- ........
FY449234       <-- ........
FY449520       <-- ........
EW714633       <-- ........
FD962590       <-- ........
EX764171       <-- ........
FY438234       <-- ........
FY447031       <-- ........
EX888507       <-- ........
EV549272       <-- ........
EW723709       <-- ........
FD556458       <-- ........
FY447015       <-- ........
EV537602       <-- ........
EX755551       <-- ........
EY938870       <-- ........
FD939217       <-- ........
EX890050       <-- ........
FD562652       <-- AGATTCCC
FD964055       <-- ........
FY435793       <-- ........
EY907691       <-- AGATTCCC
FY436214       --> ........
EV541800       --> ........
EW728223       --> ........
EX892431       --> ........
FD529546       --> ........
FD960179       --> ........
EX893644       --> ........
EY921010       --> ........
FD552768       --> ........
EY934910       --> ........
FD566506       --> ........
FY444697       --> ........
EY903567       --> ........
EW719461       --> ........
FD959102       --> ........