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Alignment for radish unigene UN14234

               1      -     51
UN14234        --> CAGAATGATCTTATAAAATCTATTGTACCGTTTCTGTCAAGACTCACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> CAGAATGATCTTATAAAATCTATTGTACCGTTTCTGTCAAGACTCACACA
EX760453       --> ..................................................
EX760157       --> ..................................................

               51     -    101
UN14234        --> TCTTCAGAAAAAAACTTTCTCATGTGCTTAAAAGATGAACAAATCAATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> TCTTCAGAAAAAAACTTTCTCATGTGCTTAAAAGATGAACAAATCAATTA
EX760453       --> ....cgGAAAAAAACTTTCTCATGTGCTTAAAAGATGAACAAATCAATTA
EX760157       --> ..................................................

               101    -    151
UN14234        --> CATATAAACTCTGCTGCAAAAGAATTGGTACTAACATAAACTCGTACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> CATATAAACTCTGCTGCAAAAGAATTGGTACTAACATAAACTCGTACTAG
EX760453       --> CATATAAACTCTGCTGCAAAAGAATTGGTACTAACATAAACTCGTACTAG
EX760157       --> ............................TACTAACATAAACTCGTACTAG

               151    -    201
UN14234        --> AGCCTGTCTTTCAGTTTATACAAGTAACTTCATCAGTCTTAAACTTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> AGCCTGTCTTTCAGTTTATACAAGTAACTTCATCAGTCTTAAACTTCATT
EX760453       --> AGCCTGTCTTTCAGTTTATACAAGTAACTTCATCAGTCTTAAACTTCATT
EX760157       --> AGCCTGTCTTTCAGTTTATACAAGTAACTTCATCAGTCTTAAACTTCATT

               201    -    251
UN14234        --> GGACAGCTACTATGTACATGAGATAGGAAGGTTACACTGATTATATTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> GGACGGCTACTATGTACATGAGATAGGAAGGTTACACTGATTATATTTCC
EX760453       --> GGACAGCTACTATGTACATGAGATAGGAAGGTTACACTGATTATATTTCC
EX760157       --> GGACAGCTACTATGTACATGAGATAGGAAGGTTACACTGATTATATTTCC

               251    -    301
UN14234        --> TCAATTTTTGGAGGACTTTTGAACCTCTTGATCCACAGTTTCCGAGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> TCAATTTTTGGAGGACTTTTGAACCTCTTGATCCACAGTTTCCGAGGGAA
EX760453       --> TCAATTTTTGGAGGACTTTTGAACCTCTTGATCCACAGTTTCCGAGGGAA
EX760157       --> TCAATTTTTGGAGGACTTTTGAACCTCTTGATCCACAGTTTCCGAGGGAA

               301    -    351
UN14234        --> ATTTGCTGAGTAGCCAAACCAACACAACACCGACAAGAGCACCAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> ATTTGCTGAGTAGCCAAACCAACACAACACCGACAAGAGCACCAGAGAGA
EX760453       --> ATTTGCTGAGTAGCCAGACCAACACAACACCGACAAGAGCACCAGAGAGA
EX760157       --> ATTTGCTGAGTAGCCAAACCAACACAACACCGACAAGAGCACCAGAGAGA

               351    -    401
UN14234        --> TGCGCAATGTGATTAACAGTCTGCAAAGAATAGCCACCATATATAGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ..................................................
FD988103       <-- ..................................................
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> TGCGCAATGTGATTAACAGTCTGCAAAGAATAGCCACCATATATAGTCCC
EX760453       --> TGCGCAATGTGATTAGCAGTCTGCAAAGAATAGCCACCATATATAGTCCC
EX760157       --> TGCGCAATGTGATTAACAGTCTGCAAAGAATAGCCACCATATATAGTCCC

               401    -    451
UN14234        --> AGATACTCCAGCTGAAGCCTGAGCTGCTTCCATTACCCTCTCAATAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ......................GCTGCTTCCATTACCCTCTCAATAACGA
FD988103       <-- .......................................CTCAATAACGA
FD965608       <-- ..................................................
FD540553       <-- ..................................................
EX756696       <-- ..................................................
EY899598       <-- ..................................................
FD537034       --> AGATACTCCAGCTGAAGCCTGAGCTGCTTCCATTACCCTCTCAATAACGA
EX760453       --> AGATACTCCAGCTGAAGCCTGAGCTGCTTCCATTACCCTCTCAATAACGA
EX760157       --> AGATACTCCAGCTGAAGCCTGAGCTGCTTCCATTACCCTCTCAATAACGA

               451    -    501
UN14234        --> ACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATC
FD988103       <-- ACTGACCCAATATAAGAACTTCAAGGATCT-CCTCCAATCCCAAGACATC
FD965608       <-- ......CCAATATAAGAACTTCAAGGATC--TCTCCAATCCCAAGACATC
FD540553       <-- ........................GGATCT-CCTCCA-TCCCAAGACATC
EX756696       <-- ...................................CAATCCCA-GACATC
EY899598       <-- ..................................................
FD537034       --> ACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATC
EX760453       --> ACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATC
EX760157       --> ACTGACCCAATATAAGAACTTCAAGGATCTTCCTCCAATCCCAAGACATC

               501    -    551
UN14234        --> TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
FD988103       <-- TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
FD965608       <-- TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
FD540553       <-- TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
EX756696       <-- T-GACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
EY899598       <-- ..................................................
FD537034       --> TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
EX760453       --> TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC
EX760157       --> TTGACGAGGACGCTAATAGCAAACAACCCAAAAACAGCTCCAGAGGCTCC

               551    -    601
UN14234        --> AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
FD988103       <-- AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACAAGGTTAACTC
FD965608       <-- AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACAAGGTTAGCTC
FD540553       <-- AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
EX756696       <-- AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
EY899598       <-- ..................................................
FD537034       --> AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
EX760453       --> AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC
EX760157       --> AACGGAAACAGCATTTCTCGGCAAAACTAACCAAGAAACCAGGTTAGCTC

               601    -    651
UN14234        --> CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
FD988103       <-- CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGCTCCCTTCCTCT
FD965608       <-- CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGCTCCCTTCCTCT
FD540553       <-- CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
EX756696       <-- CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
EY899598       <-- ..................................................
FD537034       --> CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
EX760453       --> CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT
EX760157       --> CAACACCAGTGAACAAGTAAGACAGCCACAAACCAAAGTTCCCTTCCTCT

               651    -    701
UN14234        --> TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGGGAG
FD988103       <-- TCTTCAACGAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
FD965608       <-- TCTTCAACGAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
FD540553       <-- TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
EX756696       <-- TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
EY899598       <-- ..................................................
FD537034       --> TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
EX760453       --> TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGAGAG
EX760157       --> TCTTCAACAAGCTTTCCAAAGATGTAGAGGAAGAAAAGGTTGCTGGGGAG

               701    -    751
UN14234        --> ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
FD988103       <-- ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTGACAAACTGGTACCACG
FD965608       <-- ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTGACAAACTGGTACCACG
FD540553       <-- ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
EX756696       <-- ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
EY899598       <-- ..................................................
FD537034       --> ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
EX760453       --> ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG
EX760157       --> ATGGTTCCAGCTAGCATGACAGAACGTTGCAGTTACAAACTGGTACCAGG

               751    -    801
UN14234        --> CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
FD988103       <-- CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCCGCGAACCTGAAAG
FD965608       <-- CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
FD540553       <-- CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
EX756696       <-- CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
EY899598       <-- ..................................................
FD537034       --> CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAA-
EX760453       --> CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCTGCGAACCTGAAAG
EX760157       --> CTGGAAAATTGTGATAGAGATAGAGAGACTTGATGCT.............

               801    -    851
UN14234        --> AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATAT
FD988103       <-- AAGTGATCTGCTACATAGATGCCAAGATTGATGAGTATGATCCAGAATAT
FD965608       <-- AAGTGATCTGCTACATAGATGCCAAGATTGATGAGTATGATCCAGAATAT
FD540553       <-- AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATAT
EX756696       <-- AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATAT
EY899598       <-- ..................................................
FD537034       --> AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTAT............
EX760453       --> AAGTGATCTGCTACATAGACGCCAAGATTGATGAGTATGATCCAGAATAT
EX760157       --> ..................................................

               851    -    901
UN14234        --> GCCATTGGCTCTCTTTTGTGGATTCTGTTTATCTCCTCCTTTACTAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- GCCATTGGCTCTCTTTTGTGGATTCTGTTTATCTCCTCCTTTACTAAGCT
FD988103       <-- GCCATTGGCTCTCTTTTGTGGCTTCTGTTTATCTCCTCCTTTACTAAGCT
FD965608       <-- GCCATTGGCTCTCTTTTGTGGCTTCTGTTTATCTCCTCCTTTACTAAGCT
FD540553       <-- GCCATTGGCTCTCTTTTGTGGATTCTGTTTATCTCCTCCTTTACTAAGCT
EX756696       <-- GCCATTGGCTCTCTTTTGTGGATTCTGTTTATCTCCTCCTTTACTAGGCT
EY899598       <-- ..................................................
FD537034       --> ..................................................
EX760453       --> GCCATTGGCTCTCTTTTGTGGATTCTGTTTATCT................
EX760157       --> ..................................................

               901    -    951
UN14234        --> CAAGTTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATAGGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- CAAGTTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATACGAGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988103       <-- CAAGCTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATAGGAGAT  Raphanus raphanistrum subsp. landra
FD965608       <-- CAAGCTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATAGGAGAT  Raphanus raphanistrum subsp. maritimus
FD540553       <-- CAAGTTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATACGAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756696       <-- CAAGTTGTGGCGTTATGTCGGATTGGCTGAACCTGCAAGCGATACGAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899598       <-- ........................................GATAGGAGAT  Raphanus raphanistrum subsp. maritimus
FD537034       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               951    -   1001
UN14234        --> TTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- TTTGAGAAGGTGGGTGGGCGAAAGGTTGAGGCTTTTGATGAATTGAGCT-
FD988103       <-- TTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCT-
FD965608       <-- CTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCT-
FD540553       <-- TTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCTT
EX756696       <-- TTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCTT
EY899598       <-- TTTGAGAAGGTGGGTGGGCGAAAGGTTGTGGCTTTTGATGAATTGAGCT-
FD537034       --> ..................................................
EX760453       --> ..................................................
EX760157       --> ..................................................

               1001   -   1051
UN14234        --> CGGAGATTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- CGGAAGCTGAGGAAAGTTGGAAGCTTTTGTTGTTGTTGGTAAGTGGTATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988103       <-- CGGAAAGTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGAATC  Raphanus raphanistrum subsp. landra
FD965608       <-- CGGAAAGTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGAATC  Raphanus raphanistrum subsp. maritimus
FD540553       <-- AGGAG-TTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGTATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756696       <-- AGGAG-TTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGTATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899598       <-- CGGAGAGTGAGGAAAGTTGGAAGCTTTTGATGTTGTTGGTGAGTGGAATC  Raphanus raphanistrum subsp. maritimus
FD537034       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               1051   -   1101
UN14234        --> GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- GGCGACGGAGGTGCGCGGCGGCGATGGGAGGGAGGTGAAGGCGGTGTTGT
FD988103       <-- GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTCGT
FD965608       <-- GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGT
FD540553       <-- GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGT
EX756696       <-- GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGT
EY899598       <-- GGCGACGGAGGTGCGCGGCGGAGATGGGAGGGAGGTGAAGGCGGTGTTGT
FD537034       --> ..................................................
EX760453       --> ..................................................
EX760157       --> ..................................................

               1101   -   1151
UN14234        --> GAAACGAGTGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAGCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- GAAACGAGTGGAAGATTGTGGGAGAGAGAGACGGTGAAGGTGAAGCTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988103       <-- GAAACGAGGGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAACTGCG  Raphanus raphanistrum subsp. landra
FD965608       <-- GAAACGAGGGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAGCTGCG  Raphanus raphanistrum subsp. maritimus
FD540553       <-- GAAACGAGTGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAGCTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756696       <-- GAAACGAGTGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAGCTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899598       <-- GAAACGAGGGGAAGATTGTGGGAGGGAGAGACGGTGAAGGTGAAGCTGCG  Raphanus raphanistrum subsp. maritimus
FD537034       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               1151   -   1201
UN14234        --> ACATTTGCGAGCTCGTTTGTATTGTACTCAGCAAGCAGAGCAAGCAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX756313       <-- ACATTTGCGAGCTTGTTTGTATTGTACTCAGCAAGCAGAGCAAGCcc...
FD988103       <-- ACATTTGCGAGCTCGTTTGTATTGTcc.......................
FD965608       <-- ACATTTGCGAGCTCGTTTGTATTGTcc.......................
FD540553       <-- ACATTTGCGAACTCGTTTGTATTGTACTCAGCAAGCAGAGCAAGCcc...
EX756696       <-- ACATTTGCGAGCTCGTTTGTATTGTACTCAGCAAGCAGAGCAAGCAAGAG
EY899598       <-- ACATTTGCGAGCTCGTTTGTATTGTc........................
FD537034       --> ..................................................
EX760453       --> ..................................................
EX760157       --> ..................................................

               1201   -   1251
UN14234        --> ACCAAACCTCC
                   ~~~~~~~~~~~
EX756313       <-- ...........
FD988103       <-- ...........
FD965608       <-- ...........
FD540553       <-- ...........
EX756696       <-- ACCAAACCTCC
EY899598       <-- ...........
FD537034       --> ...........
EX760453       --> ...........
EX760157       --> ...........