1      -     51
UN14244        --> GAGACCACTCAAGGAAATCCCGGAGAAGGCGATCCATCTAACACAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- ..................................................
FD575231       <-- ..................................................
EW724444       --> GAGACCACTCAAGGAAATCCCGGAGAAGGCGATCCATCTAACACAACAAT
EV539019       --> ..................................................
FD560617       --> ..................................................
FD571389       --> ..................................................
EX772340       --> ..................................................

               51     -    101
UN14244        --> TTTTGTTGGGGCTTTGGATGAAAGTGTGACAGAAGATGTTTTGAAGTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- ..................................................
FD575231       <-- ..................................................
EW724444       --> TTTTGTTGGGGCTTTGGATGAAAGTGTGACAGAAGATGTTTTGAAGTCTG
EV539019       --> ....GTTGGAGCTTTGGATGAAAGTGTGACAGAAGATGTTTTGAAGTCTG
FD560617       --> ..................................................
FD571389       --> ..................................................
EX772340       --> ..................................................

               101    -    151
UN14244        --> TTTTTGGTCAATTTGGTGAACTCGTTCATGTTAAAATACCAGCAGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- ..................................................
FD575231       <-- ..................................................
EW724444       --> TTTTTGGTCAATTTGGTGAACTCGTTCATGTTAAAATACCAGCAGGAAAA
EV539019       --> TTTTTGGTCAATTTGGTGAACTCGTTCATGTTAAAATACCAGCAGGAAAA
FD560617       --> ..................................................
FD571389       --> ..................................................
EX772340       --> ..................................................

               151    -    201
UN14244        --> CGTTGCGGATTTGTTCAATTTGCTAATAGGGCTTGTGCAGAGCAAGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- ..................................................
FD575231       <-- ..................................................
EW724444       --> CGTTGCGGATTTGTTCAATTTGCTAATAGGGCTTGTGCAGAGCAAGGACT
EV539019       --> CGTTGCGGATTTGTTCAATTTGCTAATAGGGCTTGTGCAGAGCAAGGACT
FD560617       --> ..................................................
FD571389       --> ..................................................
EX772340       --> ..................................................

               201    -    251
UN14244        --> CAACGCGTTGAATGGAACACAACTTGGGGGACAAAGCATTCGTCTTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- .............................GACAAAGCATTCGTCTTTCAT
FD575231       <-- ..................................................
EW724444       --> CAACGCGTTGAATGGAACACAACTTGGGGGACAAAGCATTCGTCTTTCAT
EV539019       --> CAACGCGTTGAATGGAACACAACTTGGGGGACAAAGCATTCGTCTTTCAT
FD560617       --> .............................GACAAAGCATTCGTCTTTCAT
FD571389       --> ..................................................
EX772340       --> ..................................................

               251    -    301
UN14244        --> GGGGTCGCAGTACTTCCAACAAACAGGCTCAACCTGATCAAGGCCAGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- GGGGTCGCAGTACTTCCAACAAACAGGCTCAACCTGATCAAGGCCAGTAT
FD575231       <-- ............................ggAACCTGATCAAGGCCAGTAT
EW724444       --> GGGGTCGCAGTACTTCCAACAAACAGACTCAACCTGATCAAGGCCAGTAT
EV539019       --> GGGGTCGCAGTACTTCCAACAAACAGACTCAACCTGATCAAGGCCAGTAT
FD560617       --> GGGGTCGCAGTACTTCCAACAAACAGGCTCAACCTGATCAAGGCCAGTAT
FD571389       --> ............................ggAACCTGATCAAGGCCAGTAT
EX772340       --> ..................................................

               301    -    351
UN14244        --> GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGAAGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCGGGGATACGAAGGTTA
FD575231       <-- GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGAAGGTTA
EW724444       --> GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGAAGGTTA
EV539019       --> GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGAAGGTTA
FD560617       --> GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCGGGGATACGAAGGTTA
FD571389       --> GGTGGTGGTGGTGGATACTATGGGTATCCTCCTCAGGGATACGAAGGTTA
EX772340       --> ..................................................

               351    -    401
UN14244        --> CGGATATGCACCCCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- CGGATATGCACCTCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
FD575231       <-- CGGATATGCACCCCCTCCTCAGGACCCTAACGCCTATTATGGTGGCTACC
EW724444       --> CGGATATGCACCCCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
EV539019       --> CGGATATGCACCCCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
FD560617       --> CGGATATGCACCTCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
FD571389       --> CGGATATGCACCCCCTCCTCAGGACCCTAACGCCTACTATGGTGGCTACC
EX772340       --> ........................................GGTGGCTACC

               401    -    451
UN14244        --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCTGGTGGTGGCTACCAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- CTGGTGGTGGCTATGGAAACTACCAGCAGCCAGGT---GGCTACCAGCAG  Raphanus sativus var. oleiformis
FD575231       <-- CTGGTGGTGGCTATGGAAACTACCAGCAGCCTGGTGGTGGCTACCAGCAG  Raphanus sativus cv Early Scarlet Globe
EW724444       --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCTGG--GTGGCTACCAGCAG  Raphanus sativus cv Early Scarlet Globe
EV539019       --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCTGGTGGTGGCTACCAGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD560617       --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCAGGTGG---CTACCAGCAG  Raphanus sativus var. oleiformis
FD571389       --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCTGGTGGTGGCTACCAGCAG  Raphanus sativus cv Early Scarlet Globe
EX772340       --> CTGGTGGTGGCTATGGAAACTACCAGCAGCCAGGTGG---CTACCAGCAT  Raphanus raphanistrum subsp. landra

               451    -    501
UN14244        --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
FD575231       <-- CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
EW724444       --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
EV539019       --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
FD560617       --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
FD571389       --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG
EX772340       --> CAACAGCAGTGAAGCATGATGTGAATGTCGTGGTCGAGCTGAAGTACTAG

               501    -    551
UN14244        --> AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT
FD575231       <-- AAAGCTGTCTGTGCATTAGC..............................
EW724444       --> AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT
EV539019       --> AAAGCTGTCTGTGCATTAGCTTTTT-CTCTCTACAACTCTCTCTTTT-CT
FD560617       --> AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT
FD571389       --> AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT
EX772340       --> AAAGCTGTCTGTGCATTAGCTTTTTTCTCTCTACAACTCT-TCTTTTTCT

               551    -    601
UN14244        --> TTTGCTTT-GTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- TTTGCTTT-GTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA
FD575231       <-- ..................................................
EW724444       --> TTTGCTTTTGTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA
EV539019       --> TTTTCTTT-GTTTCTCTCTC--GCGTGACAATTGTTGAGTGCCCTCCGTA
FD560617       --> TTTGCTTT-GTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA
FD571389       --> TTTGCTTTTGTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA
EX772340       --> TTTGCTTC-GTTTCTCTCTCTCGCGTGACAATTGTTGAGTGCCCTCCGTA

               601    -    651
UN14244        --> CACAAAGAGGCTTTACCTGAAATACCCTTTT-TTT-GTCAATTTGACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- CACAAAGAGGCTTTACCTGAAATACCCTTTTCTTT-GTCAATTTGACTAT
FD575231       <-- ..................................................
EW724444       --> CACAAAGAGGCTTTACCTGAAATACCCTTTT-TT--GTCAATTTGACTAT
EV539019       --> TACAAAGAGGCTTTAACTGAAATACTTTTTT-TTT-GTCA-TTTGATTAT
FD560617       --> CACAAAGAGGCTTTACCTGAAATACCCTTTTCTTT-GTCAATTTGACTAT
FD571389       --> CACAAAGAGGCTTTACCTGAAATACCCTTTT-TT--GTCAATTTGACTAT
EX772340       --> CACAAAGAGGCTTTACCTGAAATACCCTTTT-TTTTGTCAATTTGACTAT

               651    -    701
UN14244        --> TACATTTCTCTTTGTTGTTTCAGTACCGTTTCTATTGCATCCACATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD564992       <-- TACATTTCTCTTTGTTGTTTCAGTACCGTTTCTATTGCATCCACATTTC
FD575231       <-- .................................................
EW724444       --> TACATTTCTCTTTGTTGTTT.............................
EV539019       --> TACATTTC.........................................
FD560617       --> TACATTTCTCTTTGTTGTTTCAGTACCGTTTCTATTGCATCCACATTTC
FD571389       --> TACATTTCTCTTTGTTGTTcc............................
EX772340       --> TACATTTCTCag.....................................