RadishBase

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Alignment for radish unigene UN14250

               1      -     51
UN14250        --> CTCTCGGTTTCAGATCCTTTTGTTTTGCAGAAAGGTAGCAAAATGGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- ..................................................
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> CTCTCGGTTTCAGATCCTTTTGTTTTGCAGAAAGGTAGCAAAATGGCTGA
EW717701       --> .................ctctcggtttCAGAAAGGTAGCAAAATGGCTGA
EX757508       --> .................ctctcggtttCAGAAAGGTAGCAAAATGGCTGA
EX888515       --> .................ctctcggtttCAGAAAGGTAGCAAAATGGCTGA
FD963844       --> ...................ctcggtttCAGAAAGGTAGCAAAATGGCTGA
FY431975       --> ...............tttctctcggtttcGAAAGGTAGCAAAATGGCTGA
EX757662       --> .....................ctctcggtttcAGGTAGCAAAATGGCTGA

               51     -    101
UN14250        --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- ..................................................
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
EW717701       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
EX757508       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
EX888515       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAATGGAACTGGAATGGTTA
FD963844       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
FY431975       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA
EX757662       --> CGGTGAAGACATTCAACCTCTTGTCTGCGACAACGGAACTGGAATGGTTA

               101    -    151
UN14250        --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- ..................................................
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
EW717701       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
EX757508       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
EX888515       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
FD963844       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATT
FY431975       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC
EX757662       --> AGGCTGGTTTTGCTGGTGATGATGCACCTCGAGCTGTGTTTCCCAGCATC

               151    -    201
UN14250        --> GTGGGTCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> GTGGGTCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> GTGGGCCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAAGA  Raphanus sativus var. oleiformis
EX757508       --> GTGGGTCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> GTGGGCCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAGGA  Raphanus sativus var. oleiformis
FD963844       --> GTGGGTCGTCCACGTCACACCGGAGTGATGGTTGGTATGGGACAAAAAGA  Raphanus raphanistrum subsp. maritimus
FY431975       --> GTGGGCCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAAGA  Raphanus sativus cv GSK3-1
EX757662       --> GTGGGTCGTCCTCGTCACACCGGAGTGATGGTTGGTATGGGACAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN14250        --> TGCTTACGTTGGTGACGAAGCTCAATCCAAACGTGGTATCCTAACTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> TGCTTACGTTGGTGACGAAGCTCAATCCAAGCGTGGTATCCTAACGCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> TGCTTACGTTGGCGACGAAGCTCAATCCAAACGTGGTATTCTAACTCTCA  Raphanus sativus var. oleiformis
EX757508       --> TGCTTACGTTGGTGACGAAGCTCAATCCAAGCGTGGTATCCTAACGCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> TGCTTACGTTGGCGACGAAGCTCAATCCAAACGTGGTATTCTAACTCTCA  Raphanus sativus var. oleiformis
FD963844       --> TGCTTACGTTGGTGACGAAGCTCAATCCAAACGTGGTATCCTAACTCTCA  Raphanus raphanistrum subsp. maritimus
FY431975       --> TGCTTACGTTGGCGACGAAGCTCAATCCAAACGTGGTATTCTAACTCTCA  Raphanus sativus cv GSK3-1
EX757662       --> TGCTTACGTTGGTGACGAAGCTCAATCCAAGCGTGGTATCCTAACGCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN14250        --> AGTACCCTATTGAGCACGGTATTGTCAACAACTGGGACGACATGGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> AGTACCCTATCGAGCACGGTATTGTCAACAACTGGGACGACATGGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> AGTACCCTATTGAACACGGTATTGTCAACAACTGGGACGACATGGAGAAG  Raphanus sativus var. oleiformis
EX757508       --> AGTACCCTATCGAGCACGGTATTGTCAACAACTGGGACGACATGGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> AGTACCCTATTGAACACGGTATTGTCAACAACTGGGATGACATGGAGAAG  Raphanus sativus var. oleiformis
FD963844       --> AGTACCCTATTGAGCACGGTATTGTCAACAACTGGGATGACATGGAGAAG  Raphanus raphanistrum subsp. maritimus
FY431975       --> AGTACCCTATTGAACACGGTATTGTCAACAACTGGGACGACATGGAGAAG  Raphanus sativus cv GSK3-1
EX757662       --> AGTACCCTATCGAGCACGGTATTGTCAACAACTGGGACGACATGGAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN14250        --> ATTTGGCATCATACTTTCTACAACGAGCTCCGTGTTGCACCTGAGGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> ATTTGGCATCATACTTTCTACAACGAGCTCCGTGTTGCACCTGAGGAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> ATTTGGCATCATACTTTCTACAACGAGCTTCGTGTTGCACCTGAGGAGCA  Raphanus sativus var. oleiformis
EX757508       --> ATTTGGCATCATACTTTCTACAACGAGCTCCGTGCTGCACCTGAGGAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> ATTTGGCATCATACTTTCTACAACGAGCTTCGTGTTGCACCTGAGGAGCA  Raphanus sativus var. oleiformis
FD963844       --> ATTTGGCATCATACTTTCTACAACGAGCTCCGTGTTGCACCTGAGGAGCA  Raphanus raphanistrum subsp. maritimus
FY431975       --> ATTTGGCATCATACTTTCTACAACGAGCTTCGTGTTGCACCTGAGGAGCA  Raphanus sativus cv GSK3-1
EX757662       --> ATTTGGCATCATACTTTCTACAACGAGCTCCGTGTTGCACCTGAGGAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN14250        --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- ..................................................
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
EW717701       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
EX757508       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
EX888515       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
FD963844       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
FY431975       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA
EX757662       --> TCCCATTTTGTTGACTGAAGCACCTCTTAACCCGAAAGCTAACCGTGAGA

               401    -    451
UN14250        --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- ..................................................
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
EW717701       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
EX757508       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
EX888515       --> AGATGACTCAGACCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
FD963844       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
FY431975       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG
EX757662       --> AGATGACTCAGATCATGTTTGAGACTTTCAATGCTCCGGCTATGTATGTG

               451    -    501
UN14250        --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus sativus var. oleiformis
EX757508       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus sativus var. oleiformis
FD963844       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus raphanistrum subsp. maritimus
FY431975       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus sativus cv GSK3-1
EX757662       --> GCTATTCAGGCTGTGCTTTCCCTTTACGCCAGTGGTCGTACAACCGGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN14250        --> CGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ................GATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus sativus cv GSK3-1
EX761084       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> CGTGCTCGACTCTGGAGATGGCGTTATCCACACGGTTCCTATCTACGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> TGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus sativus var. oleiformis
EX757508       --> CGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGGGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> TGTACTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus sativus var. oleiformis
FD963844       --> CGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus raphanistrum subsp. maritimus
FY431975       --> TGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus sativus cv GSK3-1
EX757662       --> CGTGCTCGACTCTGGAGATGGCGTGAGCCACACGGTTCCTATCTACGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN14250        --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
EX761084       <-- ...........................GTCTTGATCTCGCGGGTCGTGAC
FD537299       <-- ..................................................
EX761187       <-- ..................................................
FD540889       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
EW717701       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
EX757508       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
EX888515       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGAT...............
FD963844       --> GGTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
FY431975       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC
EX757662       --> GTTATGCACTTCCACATGCCATCCTACGTCTTGATCTCGCGGGTCGTGAC

               601    -    651
UN14250        --> CTCACGGACGCGTTTATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- CTCACGGACGCGTTCATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus sativus cv GSK3-1
EX761084       <-- CTCACGGACGCGTTTATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> CTCACGGACGCGTTTATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> CTCACGGACGCGTTCATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus sativus var. oleiformis
EX757508       --> CTCACGGACGCGTTTATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> ..................................................  Raphanus sativus var. oleiformis
FD963844       --> CTCACGGACGCGTTCATGAAGATCCTAACCGAGCGTGGCTACTCTTCCAC  Raphanus raphanistrum subsp. maritimus
FY431975       --> CTCACGGACGCGTTCATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus sativus cv GSK3-1
EX757662       --> CTCACGGACGCGTTTATGAAGATCCTAACCGAGCGTGGCTACTCTTTCAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN14250        --> CACCACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGAAGCTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- CACCACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGAAGCTCTGCT
EX761084       <-- CACCACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGAAGCTCTGCT
FD537299       <-- ............................................TCTGCT
EX761187       <-- ..................................................
FD540889       --> CACCACAGC.........................................
EW717701       --> CACCACAGCAGAGCGTGAA-TCGTCAGAGACATCAAGGAGAAGCTCTGCT
EX757508       --> CACCACAGCAGAGCGTGAAATCGTCAGAGACAT.................
EX888515       --> ..................................................
FD963844       --> CACCACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGAAGCTCTGCT
FY431975       --> CACCACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGAAGCTCTGCT
EX757662       --> -A-CACAGCAGAGCGTGAAATCGTCAGAGACATCAAGGAGA-GCTCTGCT

               701    -    751
UN14250        --> ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTAGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTAGCTCA
EX761084       <-- ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTAGCTCA
FD537299       <-- ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTAGCTCA
EX761187       <-- ..................................................
FD540889       --> ..................................................
EW717701       --> ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAA-CTAGCTCA
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTATCTCA
FY431975       --> ACATTGCTCTTGACTACGAGCAGGAGCTAGAGACATCCAAAACTAGCTCA
EX757662       --> ACATTG............................................

               751    -    801
UN14250        --> TCTGTTGAGAAGAACTACGAGATGCCTGATGGACAGGTGATCACCATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- TCCGTTGAGAAGAACTACGAGATGCCTGATGGACAAGTGATCACCATCGG  Raphanus sativus cv GSK3-1
EX761084       <-- TCTGTTGAGAAGAACTACGAAATGCCTGACGGACAGGTGATCACCATCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537299       <-- TCTGTTGAGAAGAACTACGAAATGCCTGATGGACAGGTGATCACCATCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761187       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540889       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW717701       --> TCCGTTGAGA-G-ACTACGAGATGC-TGATGGACAG-TGATCACCATCG-  Raphanus sativus var. oleiformis
EX757508       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX888515       --> ..................................................  Raphanus sativus var. oleiformis
FD963844       --> TCTGTTGAGAAaaa....................................  Raphanus raphanistrum subsp. maritimus
FY431975       --> TCCGTTGAGAAGAACTACGAGATGCCTGATGGACAAGTGATCACCATCGG  Raphanus sativus cv GSK3-1
EX757662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN14250        --> TGCTGAACGGTTCCGTTGCCCTGAGGTTCTTTACCAGCCGTCTATGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- TGCTGAACGGTTCCGTTGTCCTGAGGTCCTTTACCAGCCGTCTATGATTG
EX761084       <-- TGCTGAACGGTTCCGTTGCCCTGAGGTTCTTTACCAGCCGTCTATGATTG
FD537299       <-- TGCTGAACGGTTCCGTTGCCCTGAGGTTCTTTACCAGCCGTCTATGATTG
EX761187       <-- .....AACGGTTCCGTTGCCCTGAGGTTCTTTACCAGCCGTCTATGATTG
FD540889       --> ..................................................
EW717701       --> TGCTGA............................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> TGCTGAACGGTTCCGTTGTCCTGAGGTCCTTTACCAGCCGTCTATGATTG
EX757662       --> ..................................................

               851    -    901
UN14250        --> GTATGGAGAATCCAGGTATCCATGAAACAACCTATAACTCCATAATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- GTATGGAGAATCCAGGTATCCATGAAACAACCTATAACTCCATAATGAAG
EX761084       <-- GTATGGAGAATCCAGGTATCCATGAAACAACCTATAACTCCATAATGAAG
FD537299       <-- GTATGGAGAATCCAGGTATCCATGAAACAACCTATAACTCCATAATGAAG
EX761187       <-- GTATGGAGAATCCAGGTATCCATGAAACAACCTATAACTCCATAATGAAG
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> GTATGGAGAATCCAGGTATC..............................
EX757662       --> ..................................................

               901    -    951
UN14250        --> TGTGATGTCGACATCAGAAAGGACTTGTACGGTAACATTGTGCTTAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- TGTGATGTCGACATCAGAAAGGACTTGTATGGTAACATTGTGCTTAGTGG
EX761084       <-- TGTGATGTCGACATCAGAAAGGACTTGTACGGTAACATTGTGCTTAGTGG
FD537299       <-- TGTGATGTCGACATCAGAAAGGACTTGTACGGTAACATTGTGCTTAGTGG
EX761187       <-- TGTGATGTCGACATCAGAAAGGACTTGTACGGTAACATTGTGCTTAGTGG
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               951    -   1001
UN14250        --> TGGAACCACAATGTTCCCGGGGATTGCTGATAGAATGAGCAAAGAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- TGGAACCACAATGTTCCCGGGGATTGCTGATAGAATGAGCAAAGAGATCA
EX761084       <-- TGGAACCACAATGTTCCCGGGGATTGCTGATAGAATGAGCAAAGAGATCA
FD537299       <-- TGGAACCACAATGTTCCCGGGGATTGCTGATAGAATGAGCAAAGAGATCA
EX761187       <-- TGGAACCACAATGTTCCCGGGGATTGCTGATAGAATGAGCAAAGAGATCA
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1001   -   1051
UN14250        --> CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTTGTTGCTCCTCCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTTGTTGCTCCTCCTGAG
EX761084       <-- CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTTGTTGCTCCTCCTGAG
FD537299       <-- CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTTGTTGCTCCTCCTGAG
EX761187       <-- CTGCTTTGGCTCCAAGCAGCATGAAGATCAAAGTTGTTGCTCCTCCTGAG
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1051   -   1101
UN14250        --> AGGAAATACTCTGTCTGGATTGGAGGGTCTATCTTGGCCTCACTCAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- AGGAAATACTCTGTCTGGATCGGAGGGTCTATCTTGGCCTCACTCAGTAC
EX761084       <-- AGGAAATACTCTGTCTGGATTGGAGGGTCTATCTTGGCCTCACTCAGTAC
FD537299       <-- AGGAAATACTCTGTCTGGATTGGAGGGTCTATCTTGGCCTCACTCAGTAC
EX761187       <-- AGGAAATACTCTGTCTGGATTGGAGGGTCTATCTTGGCCTCACTCAGTAC
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1101   -   1151
UN14250        --> CTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCAGGCCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- CTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCAGGCCCAT
EX761084       <-- CTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCAGGCCCAT
FD537299       <-- CTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCAGGCCCAT
EX761187       <-- CTTCCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCAGGCCCAT
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1151   -   1201
UN14250        --> CCATTGTTCACAGGAAGTGTTTTTAAGCTCAAGATTCATCATTCTTCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- CCATTGTTCACAGGAAGTGCTTCTAAGCTCAAAATTCATCATTCTTCTGA
EX761084       <-- CCATTGTTCACAGGAAGTGTTTCTAAGCTCAAGATTCATCATTCTTCTGA
FD537299       <-- CCATTGTTCATAGGAAGTGTTTTTAAGCTCAAGATTCATCATTCTTCTGA
EX761187       <-- CCATTGTTCACAGGAAGTGTTTTTAAGCTCAAGATTCATCATTCTTCTGA
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1201   -   1251
UN14250        --> AAAGAAGTGGTTATGCTGCTCTTTGTTTTTT------TTTAATGTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- AAAGAAGTGGTTATGCTGCTCTTTGTTTTTTCTTTTCTTTTATGTTCTTT
EX761084       <-- AAAGAAGTGGTTATGCTGCTCTTTGTTTTTT------TTTAATGTTCTTT
FD537299       <-- AAAGAAGTGGTTATTCTGC--TTTGTTTTTT------TT-AATGTTCTTT
EX761187       <-- AAAGAAGTGGTTATGCTGCTCTTTGTTTTTT------TTTAATGTTCTTT
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1251   -   1301
UN14250        --> TTATTTTGAAATTCTGGCATAAGACATTTTCAAGGATTTATTTTCTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- TTTTTTTGAAATTGTGGCATAAGACTTTTTCAAGGATTTATTTTCT....
EX761084       <-- TTATTTTGAAATTCTGGCATAAGACATTTTCAAGGATTTATTTTCTTAAT
FD537299       <-- TTATTTTGAAATTCTGGCATAAGACATTTTCAAGGATTTATTTTCTTAAT
EX761187       <-- TTATTTTGAAATTCTGGCATAAGACATTTTCAAGGATTTATTTTCTTAAT
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1301   -   1351
UN14250        --> TCTTATTTAGTTTCAACTGTCTTTTTGAGTGAATAAAAGACCTCTATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- TCTTATTTAGTTTCAACTGTCTTTTTGAGTGAATAAAAGACCTCTATGAT
FD537299       <-- TCTTATT--TTTTCAACTGTCTTTTTGAGTGAATAAAAGACCTCTATGAT
EX761187       <-- TCTTATTTAGTTTCAACTGTCTTTTTGAGTGAATAAAGGACCTCTATGAT
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1351   -   1401
UN14250        --> TATCATAAAGCAGTTTGTTTCAAGTTCTCTCTGTTTTATCCTTTTATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- ..................................................
EX761084       <-- TATCATAAAGCAGTTTGTTTCAAGTT........................
FD537299       <-- TATCATAAAGCAGTTTGTTcc.............................
EX761187       <-- TATCATAAAGCAGTTTGTTTCAAGTTCTCTCTGTTTTATCCTTTTATCAG
FD540889       --> ..................................................
EW717701       --> ..................................................
EX757508       --> ..................................................
EX888515       --> ..................................................
FD963844       --> ..................................................
FY431975       --> ..................................................
EX757662       --> ..................................................

               1401   -   1451
UN14250        --> TTAAAGTAGTAAACTATAGAAAGTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY441109       <-- .............................
EX761084       <-- .............................
FD537299       <-- .............................
EX761187       <-- TTAAAGTAGTAAACTATAGAAAGTTTTGC
FD540889       --> .............................
EW717701       --> .............................
EX757508       --> .............................
EX888515       --> .............................
FD963844       --> .............................
FY431975       --> .............................
EX757662       --> .............................