1      -     51
UN14309        --> GGGATTTTCTCCAGATCCGTTTCGACGAGTAATCACCAGTAACATCTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ..................................................
EW727077       <-- ..................................................
EW727375       <-- ..................................................
EX766286       <-- ..................................................
FD988566       --> GGGATTTTCTCCAGATCCGTTTCGACGAGTAATCACCAGTAACATCTCTA
EX761900       --> ..................................................
EW722420       --> ..................................................
EW722509       --> ..................................................

               51     -    101
UN14309        --> ATCAAATCCTTGCCAAACTCATTCAATGGATTCCTTTCAATTTCTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ..................................................
EW727077       <-- ..................................................
EW727375       <-- ..................................................
EX766286       <-- ..................................................
FD988566       --> ATCAAATCCTTGCCAAACTCATTCAATGGATTCCTTTCAATTTCTTCTCT
EX761900       --> ..................................................
EW722420       --> ..................................................
EW722509       --> ..................................................

               101    -    151
UN14309        --> GTTTTTTTCTATTTATAGGCCTCTTTTCATTTCTTATTTCTCCACCGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- .......................TTTTCATTTCTTATTTCTCCACCGAAA
EW727077       <-- ..................................................
EW727375       <-- ..................................................
EX766286       <-- ..................................................
FD988566       --> GTTTTTTTCTATTTATAGGCCTCTTTTCATTTCTTATTTCTCCACCGAAA
EX761900       --> .........................................ggACCGAAA
EW722420       --> ..................................................
EW722509       --> ..................................................

               151    -    201
UN14309        --> TTGCTAAGCTACTCTTTGACACTCATCCTGATAGATCCCACCAGAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- TTGCTAAGCTACTCTTTGACACTCATCCTGATAGATCCCACCAGAAACTC
EW727077       <-- ..................................................
EW727375       <-- ..................................................
EX766286       <-- ..................................................
FD988566       --> TTGCTAAGCTACTCTTTGACACTCATCCTGATAGATCCCACCAGAAACTC
EX761900       --> TTGCTAAGCTACTCTTTGACACTCATCCTGATAGATCCCACCAGAAACTC
EW722420       --> ..................................................
EW722509       --> ..................................................

               201    -    251
UN14309        --> TTCACTCTCCAGCGTCCGCAAGAACGGCAATAAGACCGTCGTCTCCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- TTCACTCTCCAGCGTCCGCAAGAACGGCAATAAGACCGTCGTCTCTTCTG
EW727077       <-- ..................................................
EW727375       <-- ..................................................
EX766286       <-- ..................................................
FD988566       --> TTCACTCTCCAGCGTCCGCAAGAACGGCAATAAGACCGTCGTCTCCTCTG
EX761900       --> TTCACTCTCCAGCGTCCGCAAGAACGGCAATAAGACCGTCGTCTCCTCTG
EW722420       --> ..................................................
EW722509       --> ..................................................

               251    -    301
UN14309        --> CAAATCCGAAACCAAACTGGAAGTCTATTGTTTCCTCCGCCGCTGTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- CAAATCCGAAACCAAACTGGAAGTCTATTGTTTCCTCCGCCGCTGTAGAG  Raphanus raphanistrum subsp. landra
EW727077       <-- ..........gCCAAACTGGAAGTCCATTGTTTCCTCCGCCGCTGTAGAG  Raphanus sativus cv Early Scarlet Globe
EW727375       <-- .............................................TAGAG  Raphanus sativus cv Early Scarlet Globe
EX766286       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988566       --> CAAATCCGAAACCAAACTGGAAGTCTATTGTTTCCTCCGCCGCTGTAGAG  Raphanus raphanistrum subsp. landra
EX761900       --> CAAATCCGAAACCAAACTGGAAGTCTATTGTTTCCTCCGCCGCTGTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722420       --> ..........gCCAAACTGGAAGTCCATTGTTTCCTCCGCCGCTGTAGAG  Raphanus sativus cv Early Scarlet Globe
EW722509       --> ..........gCCAAACTGGAAGTCCATTGTTTCCTCCGCCGCTGTAGAG  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN14309        --> AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EW727077       <-- AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EW727375       <-- AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EX766286       <-- ..................................................
FD988566       --> AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EX761900       --> AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EW722420       --> AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA
EW722509       --> AAACCTAAGGAGAAGACTGCTTTGTTGTCCACCAATTCGATGAAACCAAA

               351    -    401
UN14309        --> CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGGACAAGTTATGTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGAACAGGTTATGTTCTTCT  Raphanus raphanistrum subsp. landra
EW727077       <-- CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGGACAAGTTATGTTCTTCT  Raphanus sativus cv Early Scarlet Globe
EW727375       <-- CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGGACAAGTTATGTTCTTCT  Raphanus sativus cv Early Scarlet Globe
EX766286       <-- ...........................................TTCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988566       --> CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGAACAGGTTATGTTCTTCT  Raphanus raphanistrum subsp. landra
EX761900       --> CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGAACAGGTTATGTTCTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722420       --> CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGGACAAGTTATGTTCTTCT  Raphanus sativus cv Early Scarlet Globe
EW722509       --> CGCCGCTACCGCTCTCTCCTCCGCGCATGGTGGACAAGTTATGTTCTTCT  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN14309        --> GGGATGTTTCACTTGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- GGGA---------TGTTTCACACGAAGCCGTGATGAGGCTTATAAAGAAG
EW727077       <-- GGGATGTTTCACTTGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
EW727375       <-- GGGATGTTTCACTTGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
EX766286       <-- GGGATGTTTCACTCGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
FD988566       --> GGGATGTTTCAC---------ACGAAGCCGTGATGAGGCTTATAAAGAAG
EX761900       --> GGGATGTTTCACTCGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
EW722420       --> GGGATGTTTCACTTGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG
EW722509       --> GGGATGTTTCACTTGGCCCACACGAAGCCGTGATGAGGCTTATAAAGAAG

               451    -    501
UN14309        --> ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EW727077       <-- ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EW727375       <-- ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EX766286       <-- ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
FD988566       --> ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EX761900       --> ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EW722420       --> ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC
EW722509       --> ACTTTGGTGATGCATCAGAGCTTGCACCAATTTTAGGATATCTTCAACGC

               501    -    551
UN14309        --> ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EW727077       <-- ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EW727375       <-- ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EX766286       <-- ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
FD988566       --> ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EX761900       --> ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EW722420       --> ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC
EW722509       --> ATGAGTTCCACTCATCCCAGACGATGACGGATTGATGTCCCAAGCGATCC

               551    -    601
UN14309        --> AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
EW727077       <-- AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
EW727375       <-- AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
EX766286       <-- AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
FD988566       --> AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
EX761900       --> AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT
EW722420       --> AGCCGTCGATCAAGATGGAGTGACAACTAAAGCA................
EW722509       --> AGCCGTCGATCAAGATGGAGTGACAACTAAAGCATCAGAGAGAGGTGAGT

               601    -    651
UN14309        --> TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
EW727077       <-- TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
EW727375       <-- TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
EX766286       <-- TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
FD988566       --> TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAG-TCC
EX761900       --> TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC
EW722420       --> ..................................................
EW722509       --> TTGTGGCATTGTAACTGTGATGGAGGTAGGAATCAAGTTTTGGAAGGTCC

               651    -    701
UN14309        --> AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
EW727077       <-- AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
EW727375       <-- AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
EX766286       <-- AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
FD988566       --> AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTG..........
EX761900       --> AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA
EW722420       --> ..................................................
EW722509       --> AAGAAAGTCTGGAACTTACCGTCTGTGTAGAGCAAGTTTGTGAAATAAGA

               701    -    751
UN14309        --> GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGCTT  Raphanus raphanistrum subsp. landra
EW727077       <-- GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGGTT  Raphanus sativus cv Early Scarlet Globe
EW727375       <-- GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGGTT  Raphanus sativus cv Early Scarlet Globe
EX766286       <-- GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988566       --> ..................................................  Raphanus raphanistrum subsp. landra
EX761900       --> GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722420       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722509       --> GAGACAAGCCATGGCTGATGAGTTCTGGTCTGGTGTTTGATAAGACGGTT  Raphanus sativus cv Early Scarlet Globe

               751    -    801
UN14309        --> GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
EW727077       <-- GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
EW727375       <-- GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
EX766286       <-- GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
FD988566       --> ..................................................
EX761900       --> GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT
EW722420       --> ..................................................
EW722509       --> GACGAGTACTTCGTTTATAAGGACTGTAAGAGTGGCTGATTAGTTCTGGT

               801    -    851
UN14309        --> CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- CTCGTGTTTGATCTGGATGCCCTCCAGATCTACTTATCTATGTATAAACA
EW727077       <-- CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA
EW727375       <-- CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA
EX766286       <-- CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA
FD988566       --> ..................................................
EX761900       --> CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA
EW722420       --> ..................................................
EW722509       --> CTCGTGTTTGATCTGGATGCCCTCCGGATCTACTTATCTATGTATAAACA

               851    -    901
UN14309        --> AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA
EW727077       <-- AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA
EW727375       <-- AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA
EX766286       <-- AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA
FD988566       --> ..................................................
EX761900       --> AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAcgaggtctagcattat
EW722420       --> ..................................................
EW722509       --> AACATGCTTCTTCCTTGCATGTGGCTCTGTTTTAACCGAGGGTCTAGCCA

               901    -    951
UN14309        --> TTTATTCCACACTTATATGTCTTCACAGCTTCAGTTTCCTTACCAATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- TTTATTC...........................................
EW727077       <-- TTTATTCCACACTTATATGTCTTCACAGCTTCAGTTTCCTTACCAATACA
EW727375       <-- TTTATTCCACACTTATATGTCTTCACAGCTTCAGTTTCCTTACCAATACA
EX766286       <-- TTTATTCCACACTTA--TGTCTTCACAGCTTCAGTTTCCTTATCAATACA
FD988566       --> ..................................................
EX761900       --> cacactatgtctcaca..................................
EW722420       --> ..................................................
EW722509       --> TTTATTCCACACTTATATGTCTTCACAGCTT...................

               951    -   1001
UN14309        --> TATTTAAGCTGTCAACTGTTTAGTATTCTGTTCTTCAATCTTAATTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ..................................................
EW727077       <-- TATTTAAGCTGTCAACTGTTTAGTATTCTGTTCTTCAATCTTAATTTTAT
EW727375       <-- TATTTAAGCTGTCAACTGTTTAGTATTCTGTTCTTCAATCTTAATTTTAT
EX766286       <-- TATTTAAGCTGTCAACTGTTTAGTATTCTGTCCTTGAAACTTAATTTTAT
FD988566       --> ..................................................
EX761900       --> ..................................................
EW722420       --> ..................................................
EW722509       --> ..................................................

               1001   -   1051
UN14309        --> CATGTATACTGCATAAATAGAAATTGAATTCAAACTATTAAAAATTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ..................................................
EW727077       <-- CATGTATACTGCATAAATAGAAATTGAATTCAAACTATTAAAAATTTGTT
EW727375       <-- CATGTATACTGCATAAATAGAAATTGAATTCAAACTATTAAAAATTTGTT
EX766286       <-- CATGTATACTGCATAAATAGAAAaatttgtttaagc..............
FD988566       --> ..................................................
EX761900       --> ..................................................
EW722420       --> ..................................................
EW722509       --> ..................................................

               1051   -   1101
UN14309        --> TAATCATAAATCGTTGCATATATATTATTATGATACCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984439       <-- ........................................
EW727077       <-- TAATCATAAATCGTTGCATATATATTATTATGATACCACC
EW727375       <-- TAATCATAAATCGTTGCATATATATTATTATGATACCACC
EX766286       <-- ........................................
FD988566       --> ........................................
EX761900       --> ........................................
EW722420       --> ........................................
EW722509       --> ........................................