Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN14321

               1      -     51
UN14321        --> CTCCTCTTCGAGTCTCTTCTTTATTGTTACATTTATGCACCGCAAAAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> CTCCTCTTCGAGTCTCTTCTTTATTGTTACATTTATGCACCGCAAAAGGG
FD531704       --> ..............................................AGGG
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               51     -    101
UN14321        --> AAAGGATCAAATGTCTACACGTGAAATGGTAACCAAATTGAAAGCCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> AAAGGATCAAATGTCTACACGTGAAATGGTAACCAAATTGAAAGCCAAAA
FD531704       --> AAAGGATCAAATGTCTACACGTGAAATGGTAACCAAATTGAAAGCCAAAA
EY910891       --> ...........................GGTAACCAAATTGAAAGCCAAAA
FD574432       --> ..........................aGGTAACCAAATTGAAAGCCAAAA
FD984673       --> ...........................GGTAACCAAATTGAAAGCCAAAA
FD986068       --> ...........................GGTAACCAAATTGAAAGCCAAAA
FD544908       --> .......................................ggAAGTCAAAA
FD565485       --> ..................................................
FD574612       --> ..................................................

               101    -    151
UN14321        --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- .....CGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> TCTTTCGTAGCAACACAGTAATAT--CATAACCCATAGAGAGGTACAAAG
FD531704       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
EY910891       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD574432       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD984673       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD986068       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD544908       --> TCTTTCGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD565485       --> .....CGTAGCAACACAGTAATATTTCATAACCCATAGAGAGGTACAAAG
FD574612       --> .........................................GGTACAAAG

               151    -    201
UN14321        --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD531704       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
EY910891       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD574432       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD984673       --> GGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD986068       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD544908       --> AGAAGAAGAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD565485       --> AGAAAAAAAATCTACTTTACGCTGAAAGCTGAAACAGGTAAAGAGGACTG
FD574612       --> AGAAAAAAAATCTACTTTACCCTGAAAGCTGAAACAGGTAAAGAGGACTG

               201    -    251
UN14321        --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
FD531704       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
EY910891       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
FD574432       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
FD984673       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
FD986068       --> TTGAACATGAAAGCTAAAACTTTAGTTACTTTTAAGGGTTTCAAAAGTCA
FD544908       --> TTGAACATGAAAGCTAAAACTTTAGTTTCTTTTAAGGGTTTCAAAAGTCA
FD565485       --> TTGAACATGAAAGCTAAAACTTTATTTTCTTTTAAGGGTTTCAAAAGTCA
FD574612       --> TTGAACATGAAAGCTAAAACTTTATTTTCTTTTAAGGGTTTCAAAAGTCA

               251    -    301
UN14321        --> ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus sativus var. oleiformis
EY914952       <-- ...........aatctgttgtctcaCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988813       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD990349       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD536188       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765392       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570427       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD964361       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD548766       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986182       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD570645       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY905884       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982474       --> ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACAGCAG  Raphanus raphanistrum subsp. landra
FD531704       --> ACTCTGCAATCTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. maritimus
EY910891       --> ACTCTGCAATCTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574432       --> ACTCTGCAATCTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus sativus cv Early Scarlet Globe
FD984673       --> ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. landra
FD986068       --> ACTCTGCAATCTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. landra
FD544908       --> ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565485       --> ACTCTGCAATTTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus sativus var. oleiformis
FD574612       --> ACTCTGCAATCTGTTTGTTCTTCACCTGAACCACCATCTCTGAACGGCAG  Raphanus sativus cv Early Scarlet Globe

               301    -    351
UN14321        --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
EY914952       <-- TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATTGGATTCACC
FD531704       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
EY910891       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD574432       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD984673       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATTGGATTCACC
FD986068       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD544908       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD565485       --> TCACCGGAGTATTCAAGAAGGGAGCGTAACGTTGGATCATCGGATTCACC
FD574612       --> TCACCGGAGTATTCAAAAAGGGAGCGTAACGTTGGATCATCGGATTCACC

               351    -    401
UN14321        --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
EY914952       <-- GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD988813       <-- ..................................................
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD531704       --> GTCCTCCCTATTTTGTTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
EY910891       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD574432       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD984673       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD986068       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTGTCCTGCTGTCACCGG
FD544908       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD565485       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGTGGTATCCTGCTGTCACCGG
FD574612       --> GTCCTCCCTATTTTGCTCCAATTGCTCTGGGGGTATCCTGCTGTCACCGG

               401    -    451
UN14321        --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
EY914952       <-- TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD988813       <-- .........................................TCTGTATAA
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD531704       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
EY910891       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD574432       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD984673       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD986068       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD544908       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD565485       --> TGCTTGATACATCAGCTTCAATAGCTGCCAGTACATGAATGTCTGTATAA
FD574612       --> TGCTTGATACATCAGCT.................................

               451    -    501
UN14321        --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
EY914952       <-- AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD988813       <-- AGTTGCGT-GCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD990349       <-- ..................................................
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD531704       --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
EY910891       --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD574432       --> AGTTGCGTTGCCATGAGAGCAGAAAGATAATCAGAAGGAAGCCAATGGCT
FD984673       --> AGTTGCGTTGCCATGAGAGCAGAAAGATAATCAGAAGGAAGCCAATGGCT
FD986068       --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD544908       --> AGTTGCGTTGCCATGAGAGCAGAGAGATAATCAGAAGGAAGCCAATGGCT
FD565485       --> AGTTGCGTTGCCATGAGAGCAAAAAGATAATCAAAAGGAAGCCAATGGCT
FD574612       --> ..................................................

               501    -    551
UN14321        --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
EY914952       <-- ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD988813       <-- ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD990349       <-- .......................................TTTGACTCCAC
FD536188       <-- ..................................................
EX765392       <-- ..................................................
FD570427       <-- ..................................................
FD964361       <-- ..................................................
FD548766       <-- ..................................................
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD531704       --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
EY910891       --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD574432       --> ATCTCAGCTTGCGATGAAAGGATGTTGAGGGTAGTTGTGTTTGAC.....
FD984673       --> ATCTCAGCTTGCGATGAAAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD986068       --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD544908       --> ATCTCAGCTTGCGATGAGAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD565485       --> ATCTCAGCTTGCGATGAAAGGATGTTGAGGGTAGTTGTGTTTGACTCCAC
FD574612       --> ..................................................

               551    -    601
UN14321        --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- CCAAACACAAGGGTCTTCCAAGTAATTCCTGTATATGGTGGAGCGAGTGA
EY914952       <-- CCAAACACAAGGGTCTTACAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD988813       <-- CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD990349       <-- CCAAACACAAGGGTCTTCCAAGTACT-CCTGTATATG-TGGAGCGAGTGA
FD536188       <-- ............GTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
EX765392       <-- ................TCCAAGTACT-CCTGTATATGGTGGAGCGAGTGA
FD570427       <-- .................................tatatgtGAGCGAGTGA
FD964361       <-- ................................gtatatgtGAGCGAGTGA
FD548766       <-- .................................................A
FD986182       <-- ..................................................
FD570645       <-- ..................................................
EY905884       <-- ..................................................
FD982474       --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD531704       --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
EY910891       --> CCAAACACAAGGGTCTTACAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD574432       --> ..................................................
FD984673       --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD986068       --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD544908       --> CCAAACACAAGGGTCTTCCAAGTACTTCCTGTATATGGTGGAGCGAGTGA
FD565485       --> CCAAACACAAGGGTCTTCCAAGTAATTCCTGTATATGGTGGAGCGAGTGA
FD574612       --> ..................................................

               601    -    651
UN14321        --> AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus sativus var. oleiformis
EY914952       <-- AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988813       <-- AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD990349       <-- AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD536188       <-- AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. maritimus
EX765392       <-- AATTACGTCTCAAGAACTTGGCT-CTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570427       <-- A-GTACGTCTCAAGAACT-GGCTACT-G-TCAAGTGCTCGACACA-GATG  Raphanus sativus cv Early Scarlet Globe
FD964361       <-- AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. maritimus
FD548766       <-- AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986182       <-- ....ACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD570645       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY905884       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982474       --> AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD531704       --> AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. maritimus
EY910891       --> AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574432       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD984673       --> AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD986068       --> AGTTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. landra
FD544908       --> AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565485       --> AATTACGTCTCAAGAACTTGGCTACTTGTTCAAGTGCTCGACACAAGATG  Raphanus sativus var. oleiformis
FD574612       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN14321        --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
EY914952       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD988813       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD990349       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD536188       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
EX765392       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAACGTAAGGCA
FD570427       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD964361       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD548766       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAACGTAAGGCA
FD986182       <-- GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD570645       <-- ..AATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
EY905884       <-- ..................................................
FD982474       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD531704       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
EY910891       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD574432       --> ..................................................
FD984673       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD986068       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAATGTAAGGCA
FD544908       --> GGAATCAAAGCAAACTTGAGACAGAGATGTGAAGTGACAAACGTAAGGCA
FD565485       --> GGAATCAAAGCAAACTTGAGACAGA.........................
FD574612       --> ..................................................

               701    -    751
UN14321        --> GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
EY914952       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD988813       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD990349       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD536188       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
EX765392       <-- GTAGATGAAATAGATGAAGTCCTTTGCTCCCACAATTGACTGAAAATAAA
FD570427       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD964361       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAA-
FD548766       <-- GTAGATGAAATAGATGAAGTCCTTTGCTCCCACAATTGACTGAAAATAAA
FD986182       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD570645       <-- GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
EY905884       <-- ..................................................
FD982474       --> GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD531704       --> GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
EY910891       --> GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD574432       --> ..................................................
FD984673       --> GTAGATGAAAT.......................................
FD986068       --> GTAGATGAAATAGATGAAATCCTTTGCTCCCACAATTGACTGAAAATAAA
FD544908       --> GTAGATGAAATAGATGAAGTCCTTTGCTCCCACAATTGACTGAAAATAAA
FD565485       --> ..................................................
FD574612       --> ..................................................

               751    -    801
UN14321        --> CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- CTTGCATCCCTTGCATATT...............................
EY914952       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD988813       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD990349       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD536188       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
EX765392       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD570427       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD964361       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD548766       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD986182       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD570645       <-- CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
EY905884       <-- ....................................CGTAAAGAGAGTAC
FD982474       --> CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTA.
FD531704       --> CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
EY910891       --> CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> CTTGCATCCCTTGCATATTCCATGCCCTTGGCCTCCCGTAAAGAGAGTAC
FD544908       --> CTTGCATCCCTTGCATATTCCATGCCCTTGG...................
FD565485       --> ..................................................
FD574612       --> ..................................................

               801    -    851
UN14321        --> AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD988813       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD990349       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD536188       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
EX765392       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD570427       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD964361       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD548766       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD986182       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD570645       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
EY905884       <-- AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> AAGGAATATAGAGA....................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> AAGGAATATAGAGAGGAGCACGCAGTTCCCATGAAAGATAGACGATAAGC
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               851    -    901
UN14321        --> CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAACACAGCAA
FD988813       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD990349       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD536188       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
EX765392       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD570427       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD964361       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD548766       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
FD986182       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCTAGCACAGCAA
FD570645       <-- CCTACTAGAGAGGTTCTTTGGAACTAGAGGTAACACTGCCAGCACAGCAA
EY905884       <-- CCTACTAGAGAGGTTCTTTGGTACTAGAGGTAACACTGCCAGCACAGCTA
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> CCTACTAG..........................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               901    -    951
UN14321        --> TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTc..........
FD988813       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD990349       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD536188       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
EX765392       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD570427       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD964361       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD548766       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD986182       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
FD570645       <-- TAACGAAAACCCAAGCATTGACAGAGAAGTGAATAGTCTGCTGATCCCAG
EY905884       <-- TAACGAAAACCCAAGCATTGACAGAGAACTGAATAGTCTGCTGATCCCAG
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               951    -   1001
UN14321        --> CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
FD990349       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
FD536188       <-- CGCACTGGACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
EX765392       <-- CGCACTGAACTTGGGCTTGCACCAGTCGAAGCAGACGGCCCAGTACTTCG
FD570427       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
FD964361       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTGCG
FD548766       <-- CGCACTGAACTTGGGCTTGCACCAGTCGAAGCAGACGGCCCAGTACTTCG
FD986182       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
FD570645       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCGCAGTACTACG
EY905884       <-- CGCACTGAACTTGGGCTTGCACCAGTCGTAGCAGACGGCCCAGTACTACG
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1001   -   1051
UN14321        --> AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................  Raphanus sativus var. oleiformis
EY914952       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988813       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. landra
FD990349       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. landra
FD536188       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. maritimus
EX765392       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGCATTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD570427       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGCATTAG  Raphanus sativus cv Early Scarlet Globe
FD964361       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. maritimus
FD548766       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGCATTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD986182       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. landra
FD570645       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGCATTAG  Raphanus sativus cv Early Scarlet Globe
EY905884       <-- AGGAACCGATCCAGAGTTCCGTGAACGAGCTTGTTGTTCATTTGAATTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982474       --> ..................................................  Raphanus raphanistrum subsp. landra
FD531704       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY910891       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD574432       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD984673       --> ..................................................  Raphanus raphanistrum subsp. landra
FD986068       --> ..................................................  Raphanus raphanistrum subsp. landra
FD544908       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD565485       --> ..................................................  Raphanus sativus var. oleiformis
FD574612       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               1051   -   1101
UN14321        --> TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
FD990349       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
FD536188       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
EX765392       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTGGACGACATA
FD570427       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACGTA
FD964361       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
FD548766       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTGGACGACATA
FD986182       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
FD570645       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTCGAGGACATA
EY905884       <-- TAGCAGTTGCAGGAGTAGCAGATGGTCTTGCAGATGAATTGGACGACATA
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1101   -   1151
UN14321        --> GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD990349       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD536188       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
EX765392       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD570427       <-- GGCTCCACAACAAGATCAGGATCCA--TAGCGTTGGTAGAATTTGCGCTT
FD964361       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD548766       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD986182       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
FD570645       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTTGGTAGAATTTGCGCTT
EY905884       <-- GGCTCCACAACAAGATCAGGATCCATGTAGCGTGGGTAGAATTTGCGCTT
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1151   -   1201
UN14321        --> GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- GTAGTGc...........................................
FD990349       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD536188       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
EX765392       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD570427       <-- GTAGTGGTCGACAACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD964361       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD548766       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD986182       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD570645       <-- GTAGTGGTCGACAACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
EY905884       <-- GTAGTGGTCGACGACCTCGGGGCGAGAAGCCATGTGAGGAGGGATCAGGA
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1201   -   1251
UN14321        --> TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
FD536188       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
EX765392       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
FD570427       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
FD964361       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
FD548766       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGAT
FD986182       <-- TATTCGACCAGTAATCCGTCCACCAAGCGTCGTTATCGTAGTCGTATGCT
FD570645       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCGTAGTCGTATGCT
EY905884       <-- TATTCGACCAGTAATCCGTCCACCGAGCGTCGTTATCATAGTCGTATGCT
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1251   -   1301
UN14321        --> GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
FD536188       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
EX765392       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
FD570427       <-- GCCGCCGCTATCTTCTTCACTCACTGGGGATCATCGCCGCCGCCTTCCGC
FD964361       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
FD548766       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
FD986182       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCC..
FD570645       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
EY905884       <-- GCCGCCGCTATCTTCTTCACTCGCTGGGGATCATCGCCGCCGCCTTCCGC
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1301   -   1351
UN14321        --> CATCGATGCGATCGCTTCAACTCAATCTATTTCTCTCTCTCTCTCCGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD561264       <-- ..................................................
EY914952       <-- ..................................................
FD988813       <-- ..................................................
FD990349       <-- CATCGATGCGATCGCTTCttcaactccgatccc.................
FD536188       <-- CATAGATGCGATCGCTTCttcaactcccc.....................
EX765392       <-- CATAGATGCCATCGCTTCttcaactctctctctatctcttcgcctc....
FD570427       <-- CATCGATGCGATCGCTTCttcaactccgatagattcgattcc........
FD964361       <-- CATCGATGCGATCGCTTCttcaactccgatcc..................
FD548766       <-- CATCGATGCCATCGCTTCttcaactctctctctatctcttcgcctcc...
FD986182       <-- ..................................................
FD570645       <-- CATCGATGCGATCGCTTCttcaactccgatagattccc............
EY905884       <-- CATCGATGCGATCGCTTCAACTCAATCTATTTCTCTCTCTCTCTCCGCCC
FD982474       --> ..................................................
FD531704       --> ..................................................
EY910891       --> ..................................................
FD574432       --> ..................................................
FD984673       --> ..................................................
FD986068       --> ..................................................
FD544908       --> ..................................................
FD565485       --> ..................................................
FD574612       --> ..................................................

               1351   -   1401
UN14321        --> CC
                   ~~
FD561264       <-- ..
EY914952       <-- ..
FD988813       <-- ..
FD990349       <-- ..
FD536188       <-- ..
EX765392       <-- ..
FD570427       <-- ..
FD964361       <-- ..
FD548766       <-- ..
FD986182       <-- ..
FD570645       <-- ..
EY905884       <-- CC
FD982474       --> ..
FD531704       --> ..
EY910891       --> ..
FD574432       --> ..
FD984673       --> ..
FD986068       --> ..
FD544908       --> ..
FD565485       --> ..
FD574612       --> ..