RadishBase

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Alignment for radish unigene UN14340

               1      -     51
UN14340        --> GGGAGAGGTGTCGATTTAGTTCGCTAACTACCGAAGAAGCAACCACCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> GGGAGAGGTGTCGATTTAGTTCGCTAACTACCGAAGAAGCAACCACCTAC
EV536540       --> ....ggGGTGTCGATTTAGTTCGCTAACTACCGAAGAAGCAACCACCTAC
EV568089       --> .....gGGTGTCGATTTAGTTCGCCAACTACCGAAGAAGCAAGCACCTAC
EV568655       --> .....gGGTGTCGATTTAGTTCGCCAACTACCGAAGAAGCAAGCACCTAC
EX755190       --> ...gggGGTGTCGATTTAGTTCGCTAACTACCGAAGAAGCAACCACTCAC
FY439213       --> ...............................................TAC
EY949743       --> ..............................aacaatctacctccctccct
FD989750       --> ..................................................
EX762005       --> ..................................................

               51     -    101
UN14340        --> CTCTCTCTCTC----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> CTCTCTCTCTA----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
EV536540       --> CTCTCTCTCTCTCTCAACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
EV568089       --> CTCTCTCTCTC----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
EV568655       --> CTCTCTCTCTC----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
EX755190       --> CTCTCTCTCTC--TCAACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
FY439213       --> CTCTCTCTCTC----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
EY949743       --> CTCTCTCTCTC----AACGCTCAGAAGAAATGGCAAGGAAGAAGATCAGA
FD989750       --> ..................................................
EX762005       --> ..................................................

               101    -    151
UN14340        --> GAGTACGACTCAAAGAGACTCGTGAAGGAACACTTCAAAAGGCTTTCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACACTTCAAAAGGCTTTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACACTTCAAAAGGCTTTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACATTTCAAAAGGCTTTCCGG  Raphanus raphanistrum subsp. landra
EV568655       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACATTTCAAAAGGCTTTCCGG  Raphanus raphanistrum subsp. landra
EX755190       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACACTTCAAAAGGCTTTCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> GAGTACGACTCAAAGAGACTCGTGAAGGAACATTTCAAAAGGCTTTCCGG  Raphanus sativus cv GSK3-1
EY949743       --> GAGTACGACTCAAAGAGACTCGTCAAGGAACACTTCAAAAGGCTTTCCGG  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> ..................................................  Raphanus raphanistrum subsp. landra
EX762005       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN14340        --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTTA  Raphanus raphanistrum subsp. landra
EV568655       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTTA  Raphanus raphanistrum subsp. landra
EX755190       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTTA  Raphanus sativus cv GSK3-1
EY949743       --> TAAAGAACTCCCTATCAGATCCGTTCAGATTAACCAAGAGACTGATCTTA  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> ..................................................  Raphanus raphanistrum subsp. landra
EX762005       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN14340        --> ATGAGCTAGTTGAGAAGGAGCCTTGGCTCTCTTCCGAGAAGCTGGTCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> ATGAGCTAGTTGAGAAGGAGCCTTGGCTCTCTTCCGAGAAGCTTGTCGTC
EV536540       --> ATGAGCTAGTTGAGAAGGAGCCATGGCTCTCTTCCGAGAAGCTGGTCGTC
EV568089       --> ATGAGCTAGTTGAGAAGGAGCCTTGGCTCTCTTCCGAGAAGCTGGTCGTC
EV568655       --> ATGAGCTAGTTGAGAAGGAGCCTTGGCTCTCTTCCGAGAAGCTGGTCGTC
EX755190       --> ATGAGCTAGTTGAGAAGGAGCCATGGCTCTCTTCCGAGAAGCTGGTCGTC
FY439213       --> ATGAGCTAGTTGAGAAGGAGCCTTGGCTCTCTTCCGAGAAGCTGGTCGTC
EY949743       --> ATGAGCTAGTTGAGAAGGAGCCATGGCTCTCTTCCGAGAAGCTTGTCGTC
FD989750       --> ..................................................
EX762005       --> ..................................................

               251    -    301
UN14340        --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTCGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> AAACCTGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTCTCCTT
EV536540       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGGGCGGTTTGGTTGCCTT
EV568089       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTCGCCTT
EV568655       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTCGCCTT
EX755190       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTTGCCTT
FY439213       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTCGCCTT
EY949743       --> AAACCCGACATGTTGTTTGGTAAGCGTGGCAAGAGCGGTTTGGTTGCCTT
FD989750       --> ..................................................
EX762005       --> ..................................................

               301    -    351
UN14340        --> GAAACTCGATTTCGCTGAAGTTGCGACCTTTGTCAAAGAGCGCTTAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> GAAACTCGATTTCGCTGAAGTCGCGACCTTTGTCAAAGACCGCTTAGGCA
EV536540       --> GAAACTCGATTTCGCTGAAGTTGCGACCTTTGTCAAAGAGCGCTTAGGCA
EV568089       --> GAAACTCGATTTCGCTGAAGTTGCGACCTTTGTCAAAGAGCGCTTAGGCA
EV568655       --> GAAACTCGATTTCGCTGAAGTTGCGACCTTTGTCAAAGAGCGCTTAGGCA
EX755190       --> GAAACTCGATTTCGCTGAAGTTGCGACCTTTGTCAAAGAGCGCTTAGGCA
FY439213       --> GAAACTCGATTTCGCTGAAGTTGCGACATTTGTCAAAGAGCGCTTAGGCA
EY949743       --> GAAACTCGATTTCGCTGAAGTCGCGACCTTTGTCAAAGAGCGCTTAGGCA
FD989750       --> ..................................................
EX762005       --> ..................................................

               351    -    401
UN14340        --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACAACTTTCATTGTT
EV536540       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
EV568089       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
EV568655       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
EX755190       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
FY439213       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACAACTTTCATTGTT
EY949743       --> AAGAGGTGGAGATGAGTGGATGCAAAGGACCCATCACGACTTTCATTGTT
FD989750       --> ..................................................
EX762005       --> ..................................................

               401    -    451
UN14340        --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- .........................................TGTTTCGGA
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> GAACCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
EV536540       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
EV568089       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
EV568655       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
EX755190       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
FY439213       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTATCTCAACATTGTTTCGGA
EY949743       --> GAGCCCTTTGTCCCACACAATGAGGAGTTTTACCTCAACATTGTTTCGGA
FD989750       --> ..................................................
EX762005       --> ..................................................

               451    -    501
UN14340        --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EV536540       --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EV568089       --> TAGGCTTTGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EV568655       --> TAGGCTTTGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EX755190       --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
FY439213       --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EY949743       --> TAGGCTTGGCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATCGACATTG
FD989750       --> ........GCTGCAGCATTAGCTTTTCTGAGTGTGGAGGGATTGACATCG
EX762005       --> ..................................................

               501    -    551
UN14340        --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCGACTGGCTCTTCC
EV536540       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCGACTGGTTCTTCC
EV568089       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
EV568655       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
EX755190       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCGACTGGTTCTTCC
FY439213       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
EY949743       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
FD989750       --> AGGAGAACTGGGACAAGGTCAAGACCATCTCTGTGCCCACTGGTTCTTCC
EX762005       --> ..................................................

               551    -    601
UN14340        --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- TTGACACCTGAGATATGCGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> TTGACACCTGAGATATGCGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EV536540       --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EV568089       --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCCCTTCCTCTTGAGA
EV568655       --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EX755190       --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCCCTTGAGA
FY439213       --> TTGACACCTGAGATATGCGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EY949743       --> TTGACACCTGAGAGATGCGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
FD989750       --> TTGACACCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA
EX762005       --> ....acaCTGAGATATGTGCACCTCTTGTTGCTACCC-TTCCTCTTGAGA

               601    -    651
UN14340        --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EV536540       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EV568089       --> TCAAAGGGGAACTTGAAGATTTTTATTCAAGTTATTTTCACCCCTTTTTC
EV568655       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EX755190       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
FY439213       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EY949743       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
FD989750       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC
EX762005       --> TCAAAGGGGAACTTGAAGATTTT-ATTCAAGTTATTTTCACCC--TTTTC

               651    -    701
UN14340        --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EV540965       <-- ..................................................
FD545918       <-- ..................................................
EV541455       <-- ..................................................
FD581770       <-- ..................................................
EY912006       <-- ..................................................
EX766374       <-- ..................................................
EX759332       <-- ..................................................
EV537157       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EV536540       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EV568089       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EV568655       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EX755190       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
FY439213       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EY949743       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
FD989750       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA
EX762005       --> CAAGATCTTGATTTCACTTTCTTGGAGATGAATCCTTTTGCACTGGTTGA

               701    -    751
UN14340        --> TGGAAAGCCTTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- TGGAAAGCCGTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- ..........TATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- ............TCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- .............CCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- ...................GATATGAGGGGTGGGCTTGATGACACCGCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> TGGGAAGCCTTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> TGGAAAGCCTTATCCTCTGGATA...........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> TGGAAAGCCGTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. landra
EV568655       --> TGGAAAGCCGTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. landra
EX755190       --> TGGAAAGCCTTATCCTCTGGATA...........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> TGGAAAGCCGTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus sativus cv GSK3-1
EY949743       --> TGGGAAGCCTTATCCTCTGGATATGAGGG-TGAGCTTGATGACACCGCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> TGGAAAGCCGTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. landra
EX762005       --> TGGGAAGCCTTATCCTCTGGATATGAGGGGTGAGCTTGATGACACCGCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN14340        --> CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EV540965       <-- CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
FD545918       <-- CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EV541455       <-- CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
FD581770       <-- CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EY912006       <-- .....AAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EX766374       <-- ..................................ATTCCCCATGCCATTT
EX759332       <-- ......................................CCCATGCCATTT
EV537157       --> CTTTC.............................................
EV536540       --> ..................................................
EV568089       --> CTTTCAAAA-CTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EV568655       --> CTTTC.............................................
EX755190       --> ..................................................
FY439213       --> CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EY949743       --> CTTTCAAAA-CTTTAAGAAGTGGGGAGACATgaat...............
FD989750       --> CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT
EX762005       --> CTTTCAAAAACTTTAAGAAGTGGGGAGACATTGAATTCCCCATGCCATTT

               801    -    851
UN14340        --> GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EV540965       <-- GGAAGAGTGATGAGCCCCACCGAGAGCTTCATCCACGGTCTAGATGAGAA
FD545918       <-- GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EV541455       <-- GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
FD581770       <-- GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EY912006       <-- GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EX766374       <-- GGAAGAGTGACGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EX759332       <-- GGAAGAGTGATGAGCCCCACCGAGAGCTTCATCCACGGTCTAGATGAGAA
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAg
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EY949743       --> ..................................................
FD989750       --> GGAAGAGTGATGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA
EX762005       --> GGAAGAGTGACGAGCCCCACAGAGAGCTTCATCCACGGTCTAGATGAGAA

               851    -    901
UN14340        --> GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- GACAAGCGCATCTTTGAAGTTCACCGTCCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- GACAAGCGCATCTTTGAAGTTCACCGTCCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- GACAAGCGCATCTTTGAAGTTCACCGTCCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> acagcgc...........................................  Raphanus raphanistrum subsp. landra
EV568655       --> ..................................................  Raphanus raphanistrum subsp. landra
EX755190       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus sativus cv GSK3-1
EY949743       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> GACAAGCGCATCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. landra
EX762005       --> GACAAGCGCATCTTTGAAGTTCACCGTCCTGAATCCCAAGGGAAGGATTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN14340        --> GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTACGCAGATACGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- GGACTATGGTCGCTGGGGGAGGTGCAAGTGTCATCTACGCAGATACGGTT  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTATGCCGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTACGCAGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTATGTCGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- GGACTATGGTCGCTGGGGGAGGTGCAAGTGTCATTTACGCAGATACGGTT  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTACGCAGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTACGCAGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTATGCCGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> ..................................................  Raphanus raphanistrum subsp. landra
EV568655       --> ..................................................  Raphanus raphanistrum subsp. landra
EX755190       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> GGACTATGGTCGCTGGGGGAGGTG..........................  Raphanus sativus cv GSK3-1
EY949743       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTATGCCGATACGGTT  Raphanus raphanistrum subsp. landra
EX762005       --> GGACTATGGTCGCTGGAGGAGGTGCAAGTGTCATCTACGCAGATACGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN14340        --> GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- GGAGATCTCGGGT.....................................
EV540965       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
FD545918       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
EV541455       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGTTGAATACAGTGG
FD581770       <-- GGAGATCTCGGGTACGTATCTGAGCTTGGAAACTACGCTGAATACAGTGG
EY912006       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
EX766374       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
EX759332       <-- GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> GGAGATCTCGGGTACGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG
EX762005       --> GGAGATCTCGGGTATGCATCTGAGCTTGGAAACTATGCTGAATACAGTGG

               1001   -   1051
UN14340        --> AGCACCAAAAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- AGCACCCAAAGAAGACGAGGTTTTACAGTACGCTAGAGTTGTCATTGATT
FD545918       <-- AGCACCAAAAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT
EV541455       <-- AGCACCAAAAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT
FD581770       <-- AGCACCCGAAGAAGACGAGGTTTTACAGTACGCTAGAGTCGTCATTGATT
EY912006       <-- AGCACCAAGAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT
EX766374       <-- AGCACCAAAAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT
EX759332       <-- AGCACCCAAAGAAGACGAGGTTTTACAGTACGCTAGAGTTGTCATTGATT
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> AGCACCCAAAGAAGACGAGGTTTTACAGTACGCTAGAGTCGTCATTGATT
EX762005       --> AGCACCAAAAGAAGACGAGGTTTTGCAGTACGCTAGAGTCGTCATTGATT

               1051   -   1101
UN14340        --> GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTGGTGATCGGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTAGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTGGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- GTGCTACAGCGAATCCTGATGGAAAAACCAGAGCACTAGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTGGTGATCGGAGGT  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- GTGCTACAGCGAATCCGGATGGAAAAACCATAGCACTGGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTGGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- GTGCTACTGCGAATCCGGATGGAAAAACCAGAGCACTAGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> ..................................................  Raphanus raphanistrum subsp. landra
EV568655       --> ..................................................  Raphanus raphanistrum subsp. landra
EX755190       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> ..................................................  Raphanus sativus cv GSK3-1
EY949743       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> GTGCTACAGCGAATCCGGATGGAAAA-CCAGAGCACTAGTGATCGGAGGT  Raphanus raphanistrum subsp. landra
EX762005       --> GTGCTACAGCGAATCCGGATGGAAAAACCAGAGCACTGGTGATCGGAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN14340        --> GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- GGAATTGCGAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
FD545918       <-- GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
EV541455       <-- GGAATTGCTAACTTCACCGACGTTGCTGCTACCTTCAATGGCATTATCCG
FD581770       <-- GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
EY912006       <-- GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
EX766374       <-- GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG
EX759332       <-- GGAATTGCGAACTTCACCGATGTTGCTGCTACCTTCAATGGCATCATCCG
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> GGAATTGCTA-CTTCACCGATGTTGCTGCTACCTTCA-TGGCAT-ATCCG
EX762005       --> GGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATTATCCG

               1151   -   1201
UN14340        --> AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
FD545918       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
EV541455       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
FD581770       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
EY912006       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
EX766374       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
EX759332       <-- AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> gg................................................
EX762005       --> AGCTCTCAAGGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT

               1201   -   1251
UN14340        --> ATGTTAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- ATGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- ATGTTAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- ATGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- ATGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- ATGTTAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- ATGTTAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- ATGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> ..................................................  Raphanus raphanistrum subsp. landra
EV568655       --> ..................................................  Raphanus raphanistrum subsp. landra
EX755190       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> ..................................................  Raphanus sativus cv GSK3-1
EY949743       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> ..................................................  Raphanus raphanistrum subsp. landra
EX762005       --> ATGTTAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               1251   -   1301
UN14340        --> TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
FD545918       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
EV541455       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
FD581770       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
EY912006       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
EX766374       <-- TCCCTTGGAGATGAAATCGGTGTCCCCATCGAGGCGTATGGTCCTGAAGC
EX759332       <-- TCCCTTGGATATGAAATCGGTGTCCCCATCGAGGTGTATGGTCCTGAAGC
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> ..................................................
EX762005       --> TCCCTTGGAGATGAAATCG-TGTCCC-ATCGAGGCGTATGGTCCTGAAGC

               1301   -   1351
UN14340        --> AACAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- AACAATGACAGGTATCTGCA-TGAGGCAATCGAATACATCACTGCAGCTG
FD545918       <-- AGCAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
EV541455       <-- AACAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
FD581770       <-- AACAATGACAGGTATCTGCAAGGAGGCAATCGAACACATCACTGCAGCTG
EY912006       <-- AACAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
EX766374       <-- AACAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
EX759332       <-- AACAATGACAGGTATCTGCAAGGAGGCAATCGAATACATCACTGCAGCTG
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> ..................................................
EX762005       --> A-C-ATGACA-GTATCTGCAAG-AGGCA-TCG-ATACATCACTGCAGCTG

               1351   -   1401
UN14340        --> CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTCTGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- CATAAAA-GCCTTTACTCTGTCTTTTTACTTTAAATGCTCCTTCTGGTTT
FD545918       <-- CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTTTGGTTT
EV541455       <-- CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTCTGGTTT
FD581770       <-- CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTCTGGTTT
EY912006       <-- CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTCTGGTTT
EX766374       <-- CATAAAAAGCCTTTACTCTATCTTGTTACTTTAAATGCTCCTTCTGGTTT
EX759332       <-- CATAAAA-GCCTTTACTCTGTCTTTTTACTTTAAATGCTCCTTCTGGTTT
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> ..................................................
EX762005       --> CATAAAA-G-CTTTACTCTATCTg..........................

               1401   -   1451
UN14340        --> GTGTTGAGACTTATGGTTTGGATTATATGTTTCACTTCTTAAGTTTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV540965       <-- GTGTTGAGACTTATGGTT-GGATTATATGTTTCACTTCTTAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD545918       <-- GTGTTGAGACTTATGGTTTGGATTATATGTTTCACTTCTCAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541455       <-- GTGTTGAGACTAATGGTTTGGATTATATGTTTCACTTCTTAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD581770       <-- GTGTTGAGACTAATGGTTTGGATTATATGTTTCACTTCTTAAGTTTCTTA  Raphanus sativus cv Rat-Tail Radish #3870
EY912006       <-- GTGTTGAGACTCATGGTTTGGATTATATGTTTCACTTCTCAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX766374       <-- GTGTTGAGACTTATGGTTTGGATTATATGTTTCACTTCTCAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX759332       <-- GTGTTGAGACTTATGGTT-GGATTATATGTTTCACTTCTTAAGTTTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536540       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568089       --> ..................................................  Raphanus raphanistrum subsp. landra
EV568655       --> ..................................................  Raphanus raphanistrum subsp. landra
EX755190       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY439213       --> ..................................................  Raphanus sativus cv GSK3-1
EY949743       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD989750       --> ..................................................  Raphanus raphanistrum subsp. landra
EX762005       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1451   -   1501
UN14340        --> TTTGTATTCATAATAATCAACGAGGATCTTTGTACTCTTTTCTGTTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..................................................
EV540965       <-- TTTGTATTCATAATAATCAACGATGATCTTTGTACTCTTTTCTGTTTTTA
FD545918       <-- TTTGTATTCATAATAATCAACGAGGATCTTTGTACgg.............
EV541455       <-- TTTGTATTCATAATAATCAACGAGGATCTTTGTACTCTTTTCTGTTTTTA
FD581770       <-- TTTGTATTCATAATAATC................................
EY912006       <-- TTTGTATTCATAATAATCAACGAGGATCTTTGTACT..............
EX766374       <-- TT................................................
EX759332       <-- TTTGTATTCATAATAATCAACGATGATCTTTGTACTCTTTTCTGTTTTTA
EV537157       --> ..................................................
EV536540       --> ..................................................
EV568089       --> ..................................................
EV568655       --> ..................................................
EX755190       --> ..................................................
FY439213       --> ..................................................
EY949743       --> ..................................................
FD989750       --> ..................................................
EX762005       --> ..................................................

               1501   -   1551
UN14340        --> CTTAGTGAGTTTCACTTTTGATTG..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447957       <-- ..........................
EV540965       <-- CTTAGTGAGTTTCACTTTTGATTGac
FD545918       <-- ..........................
EV541455       <-- CATAGTGTGTTTCAtt..........
FD581770       <-- ..........................
EY912006       <-- ..........................
EX766374       <-- ..........................
EX759332       <-- CTTAGTGAGTTTCACTTTTGATTGtc
EV537157       --> ..........................
EV536540       --> ..........................
EV568089       --> ..........................
EV568655       --> ..........................
EX755190       --> ..........................
FY439213       --> ..........................
EY949743       --> ..........................
FD989750       --> ..........................
EX762005       --> ..........................