Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN14352

               1      -     51
UN14352        --> GACAGAGTTCAATCCCCGGTTCGTCTGCGGTTCGATTGAGCTTCTTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ..................................................
EX908819       <-- ..................................................
FD945457       <-- ..................................................
EY917687       <-- ..................................................
FD981975       --> GACAGAGTTCAATCCCCGGTTCGTCTGCGGTTCGATTGAGCTTCTTCTCA
FD949869       --> ..................................................
EY921564       --> ..................................................
EX754229       --> ..................................................

               51     -    101
UN14352        --> AACTCAATGCCGAAGATGAGTCATCAAGTGGTTGTTCCTATGGTGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ..................................................
EX908819       <-- ..................................................
FD945457       <-- ..................................................
EY917687       <-- ..................................................
FD981975       --> AACTCAATGCCGAAGATGAGTCATCAAGTGGTTGTTCCTATGGTGAAAGG
FD949869       --> ..................................................
EY921564       --> ..................................................
EX754229       --> ..................................................

               101    -    151
UN14352        --> TTGGACTTGGATGATGAAGGGTTCGTGTCGGAGGAGGGTGTTGGTAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ..................................................
EX908819       <-- ..................................................
FD945457       <-- ..................................................
EY917687       <-- ..................................................
FD981975       --> TTGGACTTGGATGATGAAGGGTTCGTGTCGGAGGAGGGTGTTGGTAAGAG
FD949869       --> ....gCTTGGATGATGAAGGGTTCGTGTCGGAGAAGGGTGCTGGTAAGAG
EY921564       --> ..................................................
EX754229       --> ..................................................

               151    -    201
UN14352        --> CAATGGTGCAGGAAGAAGCAGTTCAAGGGTCTCCTTCTCCTCCTGTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ..................................................
EX908819       <-- ..................................................
FD945457       <-- ..................................................
EY917687       <-- ..................................................
FD981975       --> CAATGGTGCAGGAAGAAGCAGTTCAAGGGTCTCCTTCTCCTCCTGTTTAC
FD949869       --> CAATGGTGCAGGAAGAAGCAGTTCAAGGGTCTCCTTC------AGTTTAC
EY921564       --> ..................................................
EX754229       --> ..................................................

               201    -    251
UN14352        --> GCCAGAGATATGGAGAGGCTTTCCGCTAAGGAATCTCTGCTTCTCGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ..........................................CTCGCTTT
EX908819       <-- ..................................................
FD945457       <-- ..................................................
EY917687       <-- ..................................................
FD981975       --> GCCAGAGATATGGAGAGGCTTTCCGCTAAGGAATCTCTGCTTCTCGCTTT
FD949869       --> GCCAGAGAAATGGAGAGGCTTTCCGCTAAGGAATCTCTGCTTCTCGCTTT
EY921564       --> ..................................................
EX754229       --> ..................................................

               251    -    301
UN14352        --> AAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAGGGAAAACAACGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- AAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAGGAAAAACAACGAGTA
EX908819       <-- .................TTGAAGCTTTAGTTACAGTGAAAACAACGAGTA
FD945457       <-- ........................................ACAACGAGTA
EY917687       <-- ..................................................
FD981975       --> AAAGGATGCTGGAGGCTTTGAGGCTTTAGTTACAGGAAAAACAACGAGTA
FD949869       --> AAAGGATGCTGGAGGCTTTGAAGCTTTAGTTACAGGGAAAACAACGAGTA
EY921564       --> ..................................GGGAAAACAACGAGTA
EX754229       --> ..................................................

               301    -    351
UN14352        --> TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
EX908819       <-- TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
FD945457       <-- TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
EY917687       <-- ..................................................
FD981975       --> TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
FD949869       --> TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTCGAGCGCCTTAAC
EY921564       --> TCCAAAGGATCGATGTTAATGAGAGGATAACTAGTCTAGAGCGCCTTAAC
EX754229       --> ........ggagcctgaggtttgcctgcataaAGTCTCGAGCGCCTTAAC

               351    -    401
UN14352        --> CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCGAAGGGAGATGGAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCGAAGGGAGATGGAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908819       <-- CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCCAAGGGAGATGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
FD945457       <-- CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCCAAGGGAGATGGAACTT  Raphanus sativus cv Early Scarlet Globe
EY917687       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD981975       --> CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCGAAGGGAGATGGAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD949869       --> CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCCAAGGGAGATGGAACTT  Raphanus sativus cv Early Scarlet Globe
EY921564       --> CCTTCTCCTAGACCAACTACTTCTCCTTGTTTTGAAGGCAGATGGAACTT  Raphanus raphanistrum subsp. landra
EX754229       --> CCTTCTCCTAGACCAACTACGTCTCCTTGTTTCGAAGGGAGATGGAACTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN14352        --> CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
EX908819       <-- CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
FD945457       <-- CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
EY917687       <-- ..................................................
FD981975       --> CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
FD949869       --> CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
EY921564       --> CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT
EX754229       --> CGAGTGGTTTGGCTCTGGAAGCCCTGGTTTACTCGCTGCTCGAGTTATAT

               451    -    501
UN14352        --> TCGAGAGGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- TCGAGAGGTTTCCTCCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
EX908819       <-- TCGAGAGGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
FD945457       <-- TCGAGAGGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
EY917687       <-- ..................................................
FD981975       --> TCGAGAGGTTTCCTCCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
FD949869       --> TCGAGAGGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
EY921564       --> TCGAGATGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG
EX754229       --> TCGAGAGGTTTCCTTCAACGTTGGTTAACCTCTCAAGAATGGAGATACTG

               501    -    551
UN14352        --> ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
EX908819       <-- ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
FD945457       <-- ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
EY917687       <-- ..................................................
FD981975       --> ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
FD949869       --> ATTACGGATTCTAACGCTAAGGCCACTGCAAACATCAAACTCCTCAACTC
EY921564       --> ATTACCGATGCTAACGCTAAAGCCACTGCAAACATCAAACTCCTAAACTC
EX754229       --> ATTACGGATGCTAACGCTAAAGCCACTGCGAACATCAAACTCCTGAACTC

               551    -    601
UN14352        --> GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
EX908819       <-- AATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
FD945457       <-- GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
EY917687       <-- ..................................................
FD981975       --> GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
FD949869       --> GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
EY921564       --> GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC
EX754229       --> GATAGAAAGCAAGATCGTTCTGTCAACGAAGTTGACTGTTGAGGGACCTC

               601    -    651
UN14352        --> TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC
EX908819       <-- TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC
FD945457       <-- TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC
EY917687       <-- .GAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCGACGGTC
FD981975       --> TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC
FD949869       --> TGAGACTGAGAGAAGAATATGTGGAAG.......................
EY921564       --> TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCGACGGTC
EX754229       --> TGAGACTGAGAGAAGAATATGTGGAAGGTATGGTTGAATCCCCAACGGTC

               651    -    701
UN14352        --> ATTGAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ATTGAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
EX908819       <-- ATTGAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
FD945457       <-- ATTGAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
EY917687       <-- ATTAAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
FD981975       --> ATTGAAGAAGCA......................................
FD949869       --> ..................................................
EY921564       --> ATTAAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC
EX754229       --> ATTGAAGAAGCAGTTCCTGAAACGCTTAAAGGCGCATTGGGTCAAGCCAC

               701    -    751
UN14352        --> CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCCAGTG
EX908819       <-- CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG
FD945457       <-- CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG
EY917687       <-- CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG
EX754229       --> CACAACGTTGCAGCAGCTTCCTGATGTTATCAAGGATGCTTTATCAACTG

               751    -    801
UN14352        --> GTCTAAGAATTCCCTTGAGTGGATCGTTTGAAAGATTCTTCATGATATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- GTCTAAGGATTCCCTTGAGTGGATCGTTTGAAAGATTCTTCATGATATCT
EX908819       <-- GTCTCAGAATTCCCTTGAGTGGATCGTTTGAAAGATTCTTCATGATATCT
FD945457       <-- GTCTCAGAATTCCCTTGAGTGGATCGTTTGAAAGATTCTTCATGATATCT
EY917687       <-- GTCTAAGAATTCCCTTGAGTGGATCATTTGAAGGATTCTTCATGATATCT
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> GTCTAAGAATTCCCTTGAGTGGATCATTTGAAGGATTCTTCATGATATCT
EX754229       --> GTCTAAGAATTCCCTTGAGTGGATCGTTTGAAAGATTCTTCATGATATCT

               801    -    851
UN14352        --> TATCTAGATGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- TATCTAGATGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA
EX908819       <-- TATCTAGATGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA
FD945457       <-- TATCTAGATGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCAGA
EY917687       <-- TATCTAGACGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> TATCTAGACGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA
EX754229       --> TATCTAGATGAGGAGGTTCTTATAGTAAGAGATACTTCAGGAGTGCCTGA

               851    -    901
UN14352        --> AGTTCTAACGAGGTTGGAAACACCTTCATCAACCATTGCAGAAACTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- AGTTCTAACGAGGTTGGAAACACCTTCATCAACCATTGCAGAAACTCTTT
EX908819       <-- AGTTCTAACGAGGTTGGAATCACCTTCATCAACCACCGCAGAAACTCTTT
FD945457       <-- AGTTCTAACGAGGTTGGAATCACCTTCATCAACCACCGCAGAAACTCTTT
EY917687       <-- AGTTCTAACGAGGTTAGAAACACCTTCATCAACCATTGCAGAAACTCTTT
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> AGTTCTAACGAGGTTAGAAACACCTTCATCAACCATTGCAGAAACTCTTT
EX754229       --> AGTTCTAACGAGGTTGGAAACACCTTCATCAACCATTGCAGAAACTCTTT

               901    -    951
UN14352        --> GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
EX908819       <-- GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
FD945457       <-- GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
EY917687       <-- GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> GAGTAAGATATAGTTAGATGTTACTCTAGCCATTGTTCTTATGTTCCTTC
EX754229       --> GAGTAAGATATAGTTAGATGTTACTCTAGCCACTGTTCTTATGTTCCTTC

               951    -   1001
UN14352        --> TGTGTTCTTACAAGAAACCAACTTCCAAGTTGAG-CTGTAAATGTCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- TTTGTTCTTACAAGAA-CCAACTTCCAAGTTGAGTCTGTAAATGTTTAAA
EX908819       <-- TGTGTTCTTACAAGAAACCAACTTCCAAGTTGAG-CTGTAAATGTCTAAA
FD945457       <-- TGTGTTCTTACAAGAAACCAACTTCCAAGTTGAG-CTGTAAATGTCTAAA
EY917687       <-- TATGTTCTTACAAGAAACCAACTTCCAAGTTGAG-CTGTAAATGTCTAAA
FD981975       --> ..................................................
FD949869       --> ..................................................
EY921564       --> TATGTTCTTACAAGAAACCAACTTCCAAGTTGAG-CTGTAA-TGTCTAAA
EX754229       --> TGTGTTCTTACAAGAA-CCAACTTCCAAGTTGAGTCTGTAAATGTTTAAA

               1001   -   1051
UN14352        --> ATGATACCTTAAATATCTGATTTTATTT-AATCCTTCAAATCTTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD977635       <-- ATGGTACCTTAAATATCTGATTTTATTTTAATCCTTCAAATC.....
EX908819       <-- ATGATACCTTAAATATCTGATTTTATTT-AATCCTTCAAATCTTCCC
FD945457       <-- ATGATACCTTAAATATCTGATTTTATTT-AATC..............
EY917687       <-- ATGATACCTTAAATATCTGATTTTATTT-AATC..............
FD981975       --> ...............................................
FD949869       --> ...............................................
EY921564       --> -TGATACCTTAAATATCTGATTTTATTT-AATCaaaaaaaa......
EX754229       --> ATGATA.........................................