1      -     51
UN14355        --> ACGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ACGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
FD535223       <-- ACGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
EY897402       <-- ...........agACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
FY441144       <-- ...........................................atgAACC
FY442666       <-- ..................................................
FD961958       <-- ..................................................
FY449943       <-- ..................................................
FY451330       <-- ..................................................
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> ACGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
FD958606       --> ACGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
FD529319       --> cCGACCAAACTAAACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
EY893731       --> ...........agACCGATTATTATTATTTATTTTATTTTTTTCTAAACC
FY443125       --> .....................................ccctttatgAACC
FD959270       --> ..................................................

               51     -    101
UN14355        --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FD535223       <-- CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
EY897402       <-- CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FY441144       <-- GATTGTTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FY442666       <-- ..................................................
FD961958       <-- ..................................................
FY449943       <-- ..................................................
FY451330       <-- ..................................................
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FD958606       --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FD529319       --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
EY893731       --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FY443125       --> GATTGTTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC
FD959270       --> CATTATTATTGCACTTAACATCCCAGTAATCTATAAATCCGACAAAGCTC

               101    -    151
UN14355        --> AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAACTCGAACA
FD535223       <-- AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
EY897402       <-- AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
FY441144       <-- ACTAAGACAGTTTCATCACGCGTATCTCACAATCACGACAAGCTCGAACA
FY442666       <-- ..................................................
FD961958       <-- ..................................................
FY449943       <-- ..................................................
FY451330       <-- ..................................................
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
FD958606       --> AGTAAGACAGTT-CATCAAGTGTATCTTACAATCGCGACAAGCTCGAACA
FD529319       --> AGTAAGACAGTT-AATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
EY893731       --> AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA
FY443125       --> ACTAAGACAGTTTCATCACGCGTATCTCACAATCACGACAAGCTCGAACA
FD959270       --> AGTAAGACAGTT-CATCAAGTGTATCTTACAATCACGACAAGCTCGAACA

               151    -    201
UN14355        --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FD535223       <-- CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
EY897402       <-- CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FY441144       <-- CACACAAGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FY442666       <-- .................................................C
FD961958       <-- ..................................................
FY449943       <-- ..................................................
FY451330       <-- ..................................................
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FD958606       --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FD529319       --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
EY893731       --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FY443125       --> CACACAAGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC
FD959270       --> CACA--AGAAAGCTCAGTAATAATTTCAAATGATGTAGTCCGACCATTCC

               201    -    251
UN14355        --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FD535223       <-- GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
EY897402       <-- GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FY441144       <-- GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FY442666       <-- GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FD961958       <-- .........................................CTCATCATG
FY449943       <-- ..................................................
FY451330       <-- ..................................................
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FD958606       --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FD529319       --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
EY893731       --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FY443125       --> GAAATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG
FD959270       --> GAGATAAACGAAGTGTGATCCATCGTCTCTCCCGGACACTCCTCATCATG

               251    -    301
UN14355        --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535223       <-- AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
EY897402       <-- AATCGTCGGTCTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
FY441144       <-- AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACGG  Raphanus sativus cv GSK3-1
FY442666       <-- AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACGG  Raphanus sativus cv GSK3-1
FD961958       <-- AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
FY449943       <-- ..................TCCTCCGACGAGTCTCGCCGGATTCCCAACGG  Raphanus sativus cv GSK3-1
FY451330       <-- ........................GACGAGTCTCGCCGGATTCCCAACGG  Raphanus sativus cv GSK3-1
FD962798       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD533010       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD548593       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530931       --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
FD958606       --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
FD529319       --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
EY893731       --> AATCGTCGGTCTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus
FY443125       --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACGG  Raphanus sativus cv GSK3-1
FD959270       --> AATCGTCGGTTTCTCTTTTCCTCCGACGAGTCTCGCCGGATTCCCAACCG  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN14355        --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD535223       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
EY897402       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FY441144       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FY442666       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD961958       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FY449943       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FY451330       <-- CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD962798       <-- ..................................................
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD958606       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD529319       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
EY893731       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FY443125       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT
FD959270       --> CCGTAGCTCGTGGAGGGATGTCGATCAGAACAACAGATCCGGCACCTACT

               351    -    401
UN14355        --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD535223       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
EY897402       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FY441144       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FY442666       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD961958       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FY449943       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FY451330       <-- TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD962798       <-- ...........ctCGATCT-GACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD533010       <-- ..................................................
FD548593       <-- ..................................................
FD530931       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD958606       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAAAATAGTCGCTCCAGCTCC
FD529319       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
EY893731       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FY443125       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC
FD959270       --> TTAGCTCCTGCTCCGATCTTGACGTTCCCGAGAATAGTCGCTCCAGCTCC

               401    -    451
UN14355        --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535223       <-- GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC  Raphanus raphanistrum subsp. maritimus
EY897402       <-- GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCATGCTTTAC  Raphanus raphanistrum subsp. maritimus
FY441144       <-- GATCAAGCAACCGTCACCGATCTTGGGATGCCTGTCTCCGCAAGCTTTAC  Raphanus sativus cv GSK3-1
FY442666       <-- GATCAAGCAACCGTCACCGATCTTGGGATGCCTGTCTCCGCAAGCTTTAC  Raphanus sativus cv GSK3-1
FD961958       <-- GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCATGCTTTAC  Raphanus raphanistrum subsp. maritimus
FY449943       <-- GATCAAGCAACCGTCACCGATCTTGGGATGCCTGTCTCCGCAAGCTTTAC  Raphanus sativus cv GSK3-1
FY451330       <-- GATCAAGCAACCGTCACCGATCTTGGGATGCCTGTCTCCGCAAGCTTTAC  Raphanus sativus cv GSK3-1
FD962798       <-- GATCAAGCAAC-GTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC  Raphanus raphanistrum subsp. maritimus
FD533010       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD548593       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530931       --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC  Raphanus raphanistrum subsp. maritimus
FD958606       --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCATGCTTTAC  Raphanus raphanistrum subsp. maritimus
FD529319       --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCATGCTTTGC  Raphanus raphanistrum subsp. maritimus
EY893731       --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCATGCTTTAC  Raphanus raphanistrum subsp. maritimus
FY443125       --> GATCAAGCAACCGTCACCGATCTTGGGATGCCTGTCTCCGCAAGCTTTAC  Raphanus sativus cv GSK3-1
FD959270       --> GATCAAGCAACCGTCGCCGATCTTGGGATGTCTGTCTCCGCAAGCTTTAC  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN14355        --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD535223       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCACTATC
EY897402       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTc..
FY441144       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FY442666       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD961958       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FY449943       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FY451330       <-- CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD962798       <-- GTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGT-CCCTATC
FD533010       <-- ....TCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD548593       <-- ..................................................
FD530931       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCACTATC
FD958606       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD529319       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
EY893731       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTc..
FY443125       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC
FD959270       --> CTGTTCCACCGAGCGTCACGTGGTGGAGGATCGAAACGTTGTTCCCTATC

               501    -    551
UN14355        --> ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD535223       <-- ACAGCTGTTTCTCCGATGACGACTCCAGTTGCGTGATCGAGAAGTATCCC
EY897402       <-- ..................................................
FY441144       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FY442666       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD961958       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FY449943       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FY451330       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD962798       <-- ACAACTGTTTCTCCGATGACGACTCCAGTTGCGTGATCGAGAAGTATCCC
FD533010       <-- ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD548593       <-- .................GACGACTCCGGTTGCGTGGTCGAGAAGTATCCC
FD530931       --> ACAGCTGTTTCTCCGATGACGACTCCAGTTGCGTGATCGAGAAGTATCCC
FD958606       --> ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD529319       --> ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
EY893731       --> ..................................................
FY443125       --> ACAGCTGTTTCTCCGATGACGACTCCGGTTGCGTGATCGAGAAGTATCCC
FD959270       --> ACAACTGTTTCTCCGATGACGACTCCAGTTGCGTGATCGAGAAGTATCCC

               551    -    601
UN14355        --> TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAACACCTCGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- TTTCCCGATCTTCGCTGCCGGATGGc........................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535223       <-- TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAtaataacaatta  Raphanus raphanistrum subsp. maritimus
EY897402       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY441144       <-- TTTCCCGATCTTCGCTGCTGGA............................  Raphanus sativus cv GSK3-1
FY442666       <-- TTTCCCGATCTTCGCTGCTGGATGGATATCGACGGCGAACACTTCGGAGA  Raphanus sativus cv GSK3-1
FD961958       <-- TTTCCCGATCTTCGCTGCCGGATGAATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus
FY449943       <-- TTTCCCGATCTTCGCTGCTGGATGGATATCGACGGCGAACACTTCGGAGA  Raphanus sativus cv GSK3-1
FY451330       <-- TTTCCCGATCTTCGCTGCTGGATGGATATCGACGGCGAACACTTCGGAGA  Raphanus sativus cv GSK3-1
FD962798       <-- TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD533010       <-- TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD548593       <-- TTTCCCGATCTTCGCTGCTGGATGGATATCGACGGCGAACACTTCGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530931       --> TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAtaataacaatta  Raphanus raphanistrum subsp. maritimus
FD958606       --> TTTCCCGATCTTCGCTGCCGGATGAATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus
FD529319       --> TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus
EY893731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY443125       --> TTTCCCGATCTTCGCTGCTGGATGGATATCGACGGCGAACACTTCGGAGA  Raphanus sativus cv GSK3-1
FD959270       --> TTTCCCGATCTTCGCTGCCGGATGGATATCGACGGCGAACACCTCGGAGA  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN14355        --> TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535223       <-- tgtgtccccc........................................  Raphanus raphanistrum subsp. maritimus
EY897402       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY441144       <-- ..................................................  Raphanus sativus cv GSK3-1
FY442666       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGTGTCCATAGC  Raphanus sativus cv GSK3-1
FD961958       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. maritimus
FY449943       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGTGTCCATAGC  Raphanus sativus cv GSK3-1
FY451330       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGTGTCCATAGC  Raphanus sativus cv GSK3-1
FD962798       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. maritimus
FD533010       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. maritimus
FD548593       <-- TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530931       --> tgtgtccccc........................................  Raphanus raphanistrum subsp. maritimus
FD958606       --> TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. maritimus
FD529319       --> TACGCGAGTGGAGAGC..................................  Raphanus raphanistrum subsp. maritimus
EY893731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY443125       --> TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGTGTCCATAGC  Raphanus sativus cv GSK3-1
FD959270       --> TACGCGAGTGGAGAGCTAAGGCTAGTGGCTTCCGCGTTTGAGTCCATAGC  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN14355        --> TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535223       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY897402       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY441144       <-- ..................................................  Raphanus sativus cv GSK3-1
FY442666       <-- TTGTGCGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus sativus cv GSK3-1
FD961958       <-- TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus raphanistrum subsp. maritimus
FY449943       <-- TTGTGCGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus sativus cv GSK3-1
FY451330       <-- TTGTGCGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus sativus cv GSK3-1
FD962798       <-- TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus raphanistrum subsp. maritimus
FD533010       <-- TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus raphanistrum subsp. maritimus
FD548593       <-- TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD530931       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD958606       --> TTGTGTGAGA........................................  Raphanus raphanistrum subsp. maritimus
FD529319       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY893731       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY443125       --> TTGTGCGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTGTAATTGAG  Raphanus sativus cv GSK3-1
FD959270       --> TTGTGTGAGATACGATGTGCCTGAATCGCTAAGAAGCCCTTG........  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN14355        --> AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FD961958       <-- AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FY449943       <-- AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FY451330       <-- AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FD962798       <-- AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FD533010       <-- AAGGCAACGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FD548593       <-- AAGGCAATGGGAGAAGGAGATACACGCGGGGTCACGAACGCGAGCAGCAC
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> AAGGCAATGGGAGAAGGAGATACACGCCGGGTCACGAACGCGAGCAGCAC
FD959270       --> ..................................................

               751    -    801
UN14355        --> GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FD961958       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FY449943       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FY451330       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FD962798       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FD533010       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FD548593       <-- GGAGATCCGCGACGGTGGCGTTGCGGAGAGAAGGATCGGAGGTGAACGTG
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> GGAGATCCGCGACGGTGGCGTTGC..........................
FD959270       --> ..................................................

               801    -    851
UN14355        --> TTCAAGAACAGATCGTACAGGAGCGTGGAGAGAAGCGTCGACGAGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- TTCAAGAACAGATCGTACAGGAGCGTGGAGAGAAGCGTCGACGAGCAGAG
FD961958       <-- TTCAAGAACAGATCc...................................
FY449943       <-- TTCAAGAACAGATCGTACAGGAGCGTGGAGAGAAGCGTCGACGAGCAGAG
FY451330       <-- TTCAAGAACAGATCGTACAGGAGCGTGGAGAGAAGCGTCGACGAGCAGAG
FD962798       <-- TTCAAGAACAGATCGTAAAGAAGCGTCGAGAGAAGCGTCGACGAGCATAG
FD533010       <-- TTCAAGAACAGATCGTAAAGAAGCGTCGAGAGAAGCGTCGACGAGCATAG
FD548593       <-- TTCAAGAACAGATCGTACAGGAGCGTGGAGAGAAGCGTCGACGAGCAGAG
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               851    -    901
UN14355        --> CTTGTTTCCCAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- CTTGTTTCCCAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAGA
FD961958       <-- ..................................................
FY449943       <-- CTTGTTTCCCAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAGA
FY451330       <-- CTTGTTTCCCAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAGA
FD962798       <-- CTTGTTTCCTAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAAA
FD533010       <-- CTTGTTTCCTAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAAA
FD548593       <-- CTTGTTTCCCAGATGAAACGAGATCGACCGCTCGAGAGACGAGTGAGAGA
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               901    -    951
UN14355        --> GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCCGCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCCGCGTCA
FD961958       <-- ..................................................
FY449943       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCCGCGTCA
FY451330       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCCGCGTCA
FD962798       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCAGCGTCG
FD533010       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCAGCGTCG
FD548593       <-- GAATCGTCGAGTAGAGGTAGCTAGCTAACGCCGGCTCCGCCTCCGCGTCA
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               951    -   1001
UN14355        --> CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCTGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCTGCATC
FD961958       <-- ..................................................
FY449943       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCTGCATC
FY451330       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCTGCATC
FD962798       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAACTTCCGCATC
FD533010       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCCGCATC
FD548593       <-- CGGCGAGCTTCCGCCTTGATCTGTGTCCATAATCCCGCAGCTTCTGCATC
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               1001   -   1051
UN14355        --> CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGTATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGTATCGT
FD961958       <-- ..................................................
FY449943       <-- CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGTATCGT
FY451330       <-- CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGTATCGT
FD962798       <-- CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGCATCGT
FD533010       <-- CGCCGCAGCCGCGGCAATCGCAGCTGCAGCTTCGGCAGATTGAGCATCGT
FD548593       <-- GGCTGCAGCCGCGGCGATCGCAGCTGCAGCTTCGGCAGATTGAGTATCGT
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               1051   -   1101
UN14355        --> TGGACTGTTTGTCTTTTGACGGAGATTGATGTTGGAGCTCTCCGGCCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..................................................
FD535223       <-- ..................................................
EY897402       <-- ..................................................
FY441144       <-- ..................................................
FY442666       <-- TGGACTGTTTGTCTTT-GACGGAGATTGgtg...................
FD961958       <-- ..................................................
FY449943       <-- TGGACTGTTTGTCTTT-GACGGAGATTGGTGTT.................
FY451330       <-- TGGACTGTTTGTCTTTTGACGGAGA.........................
FD962798       <-- TGGACTGTTTGTCTTTTGAGGGAGATTGATGTTGGAGCTCTCCGGCCGGC
FD533010       <-- TGGACTGTTTGTCTTTTGAGGGAGATTGATGTTGGAGCTCTCCGGCCGGC
FD548593       <-- TGGACTGTTTGTCTTTTGACGGAGATTGATGTTGGAGTTCTCCGGCCGGC
FD530931       --> ..................................................
FD958606       --> ..................................................
FD529319       --> ..................................................
EY893731       --> ..................................................
FY443125       --> ..................................................
FD959270       --> ..................................................

               1101   -   1151
UN14355        --> GGCATCTTGACGGACGGCGATAATAACAATTATGTGTCCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547529       <-- ..........................................
FD535223       <-- ..........................................
EY897402       <-- ..........................................
FY441144       <-- ..........................................
FY442666       <-- ..........................................
FD961958       <-- ..........................................
FY449943       <-- ..........................................
FY451330       <-- ..........................................
FD962798       <-- GGCATCTTGACGGACGGCGATAATAACAATTATGTGTCC...
FD533010       <-- GGCATCTTGACGGACGGCGATAATAACAATTATGTGTCCCCC
FD548593       <-- GGCATCTTGACGGACGGCGATcc...................
FD530931       --> ..........................................
FD958606       --> ..........................................
FD529319       --> ..........................................
EY893731       --> ..........................................
FY443125       --> ..........................................
FD959270       --> ..........................................