1      -     51
UN14377        --> AGGGTAAAAACCATTTTTCTTTTATCATAATATAAGAAGCAAACATATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- AGGGTAAAAACCATTTTTCTTTTATCAGAATATAAGAAGCAAACATATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566491       <-- gggaTAAAAACCATTTTTCTTTTATCATAATATAAAAAGCAAACATATGT  Raphanus raphanistrum subsp. landra
EV568058       <-- gggaTAAAAACCATTTTTCTTTTATCATAATATAAAAAGCAAACATATGT  Raphanus raphanistrum subsp. landra
EX765296       <-- .ggaTAAAAACCATTTTTCTTTTATCAGAGTATAAGAAGCAAACATATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558040       <-- .ggaTAAAAACCATTTTTCTTTTATCATAATATAAAAAGCAAACATACGT  Raphanus raphanistrum subsp. landra
FD978994       <-- .ggaTAAAAACCATTTTT-TTTTATCAGAGTATAAGAAGCAAACATATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905591       <-- .............TTTTTCTTTTATCAGAGTATAAGAAGCAAACATATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769093       --> .ggaTAAAAACCATTTTTCTTTTATCAGAGTATAAGAAGCAAACATATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554021       --> .ggaTAAAAACCATTTTTCTTTTATCATAATATAAAAAGCAAACATACGT  Raphanus raphanistrum subsp. landra
EY935190       --> .............TTTTTCTTTTATCATAATATAAGAAGCAAACATATGT  Raphanus sativus cv Early Scarlet Globe
FD975135       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572866       --> ..................................................  Raphanus raphanistrum subsp. landra

               51     -    101
UN14377        --> ATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- ATGGGGGAGACGCAGAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566491       <-- ATGGGGGAGACACAAAGTTACTCTCCTAGGAACATGATAGAAGTTCCACA  Raphanus raphanistrum subsp. landra
EV568058       <-- ATGGGGGAGACACAAAGTTACTCTCCTAGGAACATGATAGAAGTTCCACA  Raphanus raphanistrum subsp. landra
EX765296       <-- ATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558040       <-- ATGGGGGAGACACAAAGTTACTCTCCTAGGAACATGATAGAAGTTCCACA  Raphanus raphanistrum subsp. landra
FD978994       <-- ATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905591       <-- ATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769093       --> ATGGGGGAGACGCAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554021       --> ATGGGGGAGACACAAAGTTACTCTCCTAGGAACATGATAGAAGTTCCACA  Raphanus raphanistrum subsp. landra
EY935190       --> ATAGGGGAGACGCAGAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus sativus cv Early Scarlet Globe
FD975135       --> ............CAAAGTTACTCTCCTAGGAACATGATAGAAGTTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572866       --> ..................................................  Raphanus raphanistrum subsp. landra

               101    -    151
UN14377        --> ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- ACAAACGATTTATTTTGTTTTCTAAGTTGTTGATAAATATGCACTGTCAA
EV566491       <-- ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EV568058       <-- ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EX765296       <-- ACAAACGATT-ATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
FD558040       <-- ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
FD978994       <-- ACAAACGATT-ATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EY905591       <-- ACAAACGATT-ATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EX769093       --> ACAAACGATT-ATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
FD554021       --> ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EY935190       --> ACAAACGATTTATTTTGTTTTCCAAGTTGTTGATGAATATGCACTGTCAA
FD975135       --> ACAAACGATT-ATTTTGTTTTCCAAGTTGTTGATAAATATGCACTGTCAA
EV572866       --> ..................................................

               151    -    201
UN14377        --> AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- AGACAGGCTACATGGATAA-GAA-CGGAA-TCATTTCTTGCCGCTCTTCT
EV566491       <-- AGACAGGCTACATGGATAA-GAAACGGAAATCATTTCTTGCCGCTCTTCT
EV568058       <-- AGACAGGCTACATGGATAA-GAAACGGAAATCATTTCTTGCCGCTCTTCT
EX765296       <-- AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
FD558040       <-- AGACAGGCTACATGGATAA-GAAACGGAAATCATTTCTTGCCGCTCTTCT
FD978994       <-- AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
EY905591       <-- AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
EX769093       --> AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
FD554021       --> AGACAGGCTACATGGATAAAAAA-CGGAAATCATTTCTTGCCGCTCTTCT
EY935190       --> AGACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
FD975135       --> AAACAGGCTACATGGATAA-GAA-CGGAAATCATTTCTTGCCGCTCTTCT
EV572866       --> ..................................................

               201    -    251
UN14377        --> TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566491       <-- TAAGTCCAGAGCCTCCAAAGGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. landra
EV568058       <-- TAAGTCCAGAGCCTCCAAAGGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. landra
EX765296       <-- TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558040       <-- TAAGTCCAGAGCCTCCAAAGGATCCCTTCTGTGATGCCTTGACTCTCAGT  Raphanus raphanistrum subsp. landra
FD978994       <-- TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905591       <-- TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769093       --> TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD554021       --> TAAGTCCAGAGCCTCCAAAGGATCCCTTCTGTGATGCCTTGACTCTCAGT  Raphanus raphanistrum subsp. landra
EY935190       --> TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus sativus cv Early Scarlet Globe
FD975135       --> TAAGTCCAGAGCCTCCAAAAGATCCCTTCTGTGATGCCTTGGCTCCCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572866       --> .....CCAGAGCCTCCAAAGGATCCCTTCTGTGATGCCTTGGCTCTCAGT  Raphanus raphanistrum subsp. landra

               251    -    301
UN14377        --> TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
EV566491       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
EV568058       <-- TCTTTAAGTGCCTTTTCCTCGACTTTCTTCTTCTGAAGGTTAGCCATATC
EX765296       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
FD558040       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCCTCTTCTGAAGGTTAGCCATATC
FD978994       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
EY905591       <-- TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
EX769093       --> TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
FD554021       --> TCTTTAAGTGCCTTTTCCTCGTCTTTCCTCTTCTGAAGGTTAGCCATATC
EY935190       --> TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
FD975135       --> TCTTTAAGTGCCTTTTCCTCGTCTTTCTTCTTCTGAAGGTTAGCCATATC
EV572866       --> TCTTTAAGTGCCTTTTCCTCGACTTTCTTCTTCTGAAGGTTAGCCATATC

               301    -    351
UN14377        --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EV566491       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EV568058       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EX765296       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
FD558040       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
FD978994       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EY905591       <-- GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EX769093       --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
FD554021       --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EY935190       --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
FD975135       --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCG
EV572866       --> GTGCTCGTCGTATTCCTTCTTATCAGCTTTCGGCTGCTTCAAAGGTTTCC

               351    -    401
UN14377        --> CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTTGAGCTAGGGTTTG
EV566491       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
EV568058       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGTTTTG
EX765296       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
FD558040       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
FD978994       <-- CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
EY905591       <-- CCTTTCCTCCTTG.....................................
EX769093       --> CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
FD554021       --> CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAGCTAGGGTTTG
EY935190       --> CCTTTCCTCCTTGCTTGGACGACATGACCGGTTT----AGCTAGGGTTTG
FD975135       --> CCTTTCCTCCTTGCTTGGACGACATGACCGGTTTCTGGAACTAGGGTTTG
EV572866       --> CCTTTCCTCCTTGCTTG.................................

               401    -    451
UN14377        --> ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTTCAGACGACGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD549606       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTTCAGACGACGGAC
EV566491       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTCCAGACGACGGAC
EV568058       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAGAGCAGACTTTCAGACGACGGAG
EX765296       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTTCAGACGACGGAC
FD558040       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTCCAGACGACGGAC
FD978994       <-- ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTTCAGACGACGGAC
EY905591       <-- ..................................................
EX769093       --> ATGCTGCTTGTCTGAGAATTTGCGGAAAAGTAGACTTTCAGACGACGGAC
FD554021       --> ATGCTGCTTGTCTGAAAATTTGCGGAAAAGTAGACTTCCAGA........
EY935190       --> ATGCTGCTTGTCTGAGAATTTGCGGAAAAGCAGACTTTCAGACGACGGAC
FD975135       --> ATGCTGCTTGTCTGAAAATTTGCGGAAAAGTAAACTTTCA..........
EV572866       --> ..................................................

               451    -    501
UN14377        --> TTTGTGTCTTCGATCC
                   ~~~~~~~~~~~~~~~~
FD549606       <-- TTTGTcc.........
EV566491       <-- TTTGTGTatttccc..
EV568058       <-- TTTGTGTCTTCGATCC
EX765296       <-- TTTGTGTATTCGATC.
FD558040       <-- TTTGTGTCc.......
FD978994       <-- TTTGTGTCc.......
EY905591       <-- ................
EX769093       --> TTTGTGTATTCGATC.
FD554021       --> ................
EY935190       --> TTTGTGTCc.......
FD975135       --> ................
EV572866       --> ................