1      -     51
UN14411        --> AGATAAATAAGTAAGCTACTATTATCATATCATAACCATAATCAGGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- AGATAAATAAGTAGGCTACTATTATCATATCATAACCATAATCAGGATAC  Raphanus sativus var. oleiformis
EV539633       <-- .ggTAAATACGTAAGCTACTATTATCATATCATAACCACAATCAGGATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- cggTAAATAAGTAAGCTACTATTATCATATCATAACCATAATCAGGATAC  Raphanus raphanistrum subsp. maritimus
FD978263       <-- ........gAGTAAGCTACTATTATCATATCATAACCATAATCAGGATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- .........cGTAAGCTACTATTATCATATCATAACCACAATCAGGATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> AGATAAATAAGTAGGCTACTATTATCATATCATAACCATAATCAGGATAC  Raphanus sativus var. oleiformis
EV543374       --> .ggTAAATACGTAAGCTACTATTATCATATCATAACCACAATCAGGATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> .....AATAAGTAAGCTACTATTATCATATCATAACCATAATCAGGATAC  Raphanus raphanistrum subsp. maritimus
EV541751       --> .........cGTAAGCTACTATTATCATATCATAACCACAATCAGGATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> ................................................AC  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN14411        --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
EV539633       <-- AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
FD536507       <-- AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
FD978263       <-- AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
EV537553       <-- AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
EY927375       --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
EV543374       --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
FD531955       --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
EV541751       --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA
FD974543       --> AATACAGAGCAAAAGACTACAAAATAACATGACGAACTTTCCAACAACGA

               101    -    151
UN14411        --> AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- AATAAAAACAAGACAAAGCAGGGTATGCTGAAGTCAGCGTACATAGACCC  Raphanus sativus var. oleiformis
EV539633       <-- AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGACCC  Raphanus raphanistrum subsp. maritimus
FD978263       <-- AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> AATAAAAACAAGACAAAGCAGGGTATGCTGAAGTCAGCGTACATAGACCC  Raphanus sativus var. oleiformis
EV543374       --> AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGACCC  Raphanus raphanistrum subsp. maritimus
EV541751       --> AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGGCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> AATAAAAACAAGACAAAGCAGGGTATGCTGAGGTCAGCGTACATAGACCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN14411        --> CTTTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- CTTTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus sativus var. oleiformis
EV539633       <-- CTCTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- CTTTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. maritimus
FD978263       <-- CTTTTTATTTTACTTATGCTAGACCAAGCACTCATAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- CTCTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> CTTTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus sativus var. oleiformis
EV543374       --> CTCTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> CTTTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. maritimus
EV541751       --> CTCTTTATTTTACTTATGCTAGACCAAGCACTCTTAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> CTTTTTATTTTACTTATGCTAGACCAAGCACTCATAATCCTCAGGATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN14411        --> GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
EV539633       <-- GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
FD536507       <-- GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
FD978263       <-- GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
EV537553       <-- GTATGAGTTCTCACTTCACTTGACGGTGTCG-AGTTAGTGCTCATGGAGA
EY927375       --> GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
EV543374       --> GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
FD531955       --> GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA
EV541751       --> GTATGAGTTCTCACTTCACTTGACGGTGTCG-AGTTAGTGCTCATGGAGA
FD974543       --> GTATGAGTTCTCACTTCACTTGACGGTGTCGCAGTTAGTGCTCATGGAGA

               251    -    301
UN14411        --> TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
EV539633       <-- TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
FD536507       <-- TGGAATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
FD978263       <-- TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
EV537553       <-- TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGACTAGA
EY927375       --> TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
EV543374       --> TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
FD531955       --> TGGAATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA
EV541751       --> TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGACTAGA
FD974543       --> TGGGATAGGGAATGCTAACACCGCACTTTCCAGGAAGGCTAGAGGCTAGA

               301    -    351
UN14411        --> CTTGGGTTGATGCTCTTTGCAGCGGCCTTTAGACATTTGCATGCTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- CTTGGGTTGATGCTATTTGCAGCGGCCTTTAGACATTTGCATGCTTGTTG  Raphanus sativus var. oleiformis
EV539633       <-- CTGGGGTTGATGCTCTTTGCGGCGGCCTTTAGGCATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- CTTGGGTTGATGCTCTTTGCAGCGGCCTTTAGACATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. maritimus
FD978263       <-- CTTGGGTTGATGCTCTTTGCAGCGGCCTTTAGACATTTGCGTGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- CTGGGGTTGATGCTCTTTGCAGCGGCCTTTAGGCATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> CTTGGGTTGATGCTATTTGCAGCGGCCTTTAGACATTTGCATGCTTGTTG  Raphanus sativus var. oleiformis
EV543374       --> CTGGGGTTGATGCTCTTTGCGGCGGCCTTTAGGCATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> CTTGGGTTGATGCTCTTTGCAGCGGCCTTTAGACATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. maritimus
EV541751       --> CTGGGGTTGATGCTCTTTGCAGCGGCCTTTAGGCATTTGCATGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> CTTGGGTTGATGCTCTTTGCAGCGGCCTTTAAACATTTGCGTGCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN14411        --> GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTTT-GACTCCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTTT-GACTCCCGC  Raphanus sativus var. oleiformis
EV539633       <-- GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- GCGGTCCGGTGTGGTTTGAGCCATACCGTTCAGTTTTTTTTGACTCCCGC  Raphanus raphanistrum subsp. maritimus
FD978263       <-- GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCCCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- GCGGTCCGATGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTTT-GACTCCCGC  Raphanus sativus var. oleiformis
EV543374       --> GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> GCGGTCCGGTGTGGTTTGAGCCATACCGTTCAGTTTTTTTTGACTCCCGC  Raphanus raphanistrum subsp. maritimus
EV541751       --> GCGGTCCGATGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCCCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> GCGGTCCGGTGTGGTTTGAGCCATACCATTCAGTTTTTT--GACTCC...  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN14411        --> ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- ACAGCATGGAGGCGGTACCACCCCACCTTTGGATAGGTAGCCGGCACATG
EV539633       <-- ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
FD536507       <-- ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
FD978263       <-- ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
EV537553       <-- ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
EY927375       --> ACAGCATGGAGGCGGTACCACCCCACCTTTGGATAGGTAGCCGGCACATG
EV543374       --> ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
FD531955       --> ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
EV541751       --> ACAGCATGGAGGCGGCACCACCCCACCTTTGGATAGGTAGCCGGCACATG
FD974543       --> ..................................................

               451    -    501
UN14411        --> GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
EV539633       <-- GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
FD536507       <-- GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
FD978263       <-- GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
EV537553       <-- GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
EY927375       --> GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
EV543374       --> GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
FD531955       --> GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
EV541751       --> GAACCAAGCTACTTGCCACTGTGCCACATGAGATTGCTGCATCTACTGAT
FD974543       --> ..................................................

               501    -    551
UN14411        --> GCAACTATGCACACCGTCAAAATAAGGCATGTGAAGAACCTCAAAGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- GCAACTATGCACACCGTCAAAATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus sativus var. oleiformis
EV539633       <-- GCAACTATGCACACCGTCAACATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- GCAACTACGCACACCGTCAAAATAAGGCAAGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. maritimus
FD978263       <-- GCAACTATGCACACCGTCAAAATAAGGCAAGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- GCAACTATGCACACCGTCAACATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> GCAACTATGCACACCGTCAAAATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus sativus var. oleiformis
EV543374       --> GCAACTATGCACACCGTCAACATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> GCAACTACGCACACCGTCAAAATAAGGCAAGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. maritimus
EV541751       --> GCAACTATGCACACCGTCAACATAAGGCATGTGAAGAACCTCAAAGCGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN14411        --> AGCCATTGTCTCTTTTGTAATAAGAAAATAGGGAAATTTAGTTTACTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- AGCCATTGTCTCTTTTGTAATAAGAAAATAGGGAAATTTAGTTTACTTTT  Raphanus sativus var. oleiformis
EV539633       <-- GGCCATTGTCTCTTTTGTAATAAGAAAATAGGAAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- AGCCATTGTCTCTTTTGTAATAAAAAAATAGGGAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. maritimus
FD978263       <-- AGCCATTGTCTCTTTTGTAATAAAAAAATAGGGAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- GGCCATTGTCTCTTTTGTAATAAGAAAATAGGAAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> AGCCATTGTCTCTTTTGTAATAAGAAAATAGGGAAATTTAGTTTACTTTT  Raphanus sativus var. oleiformis
EV543374       --> GGCCATTGTCTCTTTTGTAATAAGAAAATAGGAAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> AGCCATTGTCTCTTTTGTAATAAAAAAATAGGGAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. maritimus
EV541751       --> GGCCATTGTCTCTTTTGTAATAAGAAAATAGGAAAATTTAGTTTACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN14411        --> CTGTGT--TTAAGCTTGTGTTTTGCTGTTGGATATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY931408       <-- CTGTGT--TTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus sativus var. oleiformis
EV539633       <-- CTGTGTGTTTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD536507       <-- CTGTGT--TTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. maritimus
FD978263       <-- CTGTGT--TTAAGCTTGTGCTTTGCTGTTGGATATCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537553       <-- CTGTGTGTTTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. raphanistrum (MS)
EY927375       --> CTGTGT--TTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus sativus var. oleiformis
EV543374       --> CTGTGTGTTTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD531955       --> CTGTGT--TTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. maritimus
EV541751       --> CTGTGTGTTTAAGCTTGTGTTTTGCTGTTGGATATCC.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974543       --> ......................................  Raphanus raphanistrum subsp. raphanistrum (NY)