Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN14419

               1      -     51
UN14419        --> GGCTTCGAAAAGCCGATCGAGAGGAAAAATCATTCAACGGCCGGCCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- ..................................................
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> GGCTTCGAAAAGCCGATCGAGAGGAAAAATCATTCAACGGCCGGCCTGGT
FD571805       --> ............ggGATCGAGAGGAAAAATCATTCAACGGCCGGCCTGGT
EY898602       --> ................ggGAGAGGAAAAATCATTCAACGGCCGGCCTCGT
EY930324       --> ..................................................

               51     -    101
UN14419        --> TTACTCT--CT--A-AATCCGTTCTGACGATTCATATCTCCGG-AGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- ..................................................
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> TTACTCTTTCT--ATAATCCGTTCTGACGATTCATATCTCCGGGAGCAGA
FD571805       --> GTACTCT--CTCTA-AATCCGTTCTGACGATTCATATCTCCGG-AGCAGA
EY898602       --> TTACTCT--CT--A-AATCCGTTCTGACGATTCATATCTC-GG-AGCAGA
EY930324       --> ........................................gGG-AGCAGA

               101    -    151
UN14419        --> TCTGTGATTCGTTTCTAGGC-TTTTAACTTGATATCTATTGATTCACGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- ..................................................
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> TCTGTGATTCGTTTCTAGGC-TTTTAACTTGATATCTATTGATTCACGCG
FD571805       --> TCTGTGATTCGTTTCTAGGC-TTT-AAGTTGATATCTATTGATTCACGCG
EY898602       --> TCTATGATTCGTTTCTAGGCGCTTTAACTTGATATCTATTGATTGACGCG
EY930324       --> TCTGTGATTCGTTTCTAGGC-TTTTAACTTGATATCTATTGATTCACGCG

               151    -    201
UN14419        --> ATGGCTGCTCCTCCTGCTAGAGCTCGCGCTGATTACGATTACCTCATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- .................TAGAGCTCGCGCTGATTACGATTACCTCATAAA
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> ATGGCTGCTCCTCCTGCTAGAGCTCGCGCTGATTACGATTACCTCATAAA
FD571805       --> ATGGCTGCTCCTCCTGCTAGAGCTCGCGCTGATTACGATTACCTCATAAA
EY898602       --> ATAGCTGCTCCTCCTGCTAGAGCTCGCGCTGATTACGATTACCTCATAAA
EY930324       --> ATGGCTGCTCCTCCTGCTAGAGCTCGCGCTGATTACGATTACCTCATAAA

               201    -    251
UN14419        --> ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGCCTCCTCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGCCTCCTCTTGC
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGCCTCCTCTTGC
FD571805       --> ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGCCTCCTCTTGC
EY898602       --> ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGCCTCCTCTTGC
EY930324       --> ACTTCTCTTGATCGGAGACAGCGGTGTGGGTAAGAGTTGTCTCCTCTTGC

               251    -    301
UN14419        --> GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT
FD571805       --> GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT
EY898602       --> GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT
EY930324       --> GTTTCTCAGATGGCTCCTTTACAACCAGTTTCATTACGACCATTGGGATT

               301    -    351
UN14419        --> GATTTCAAGATACGGACTATTGAACTGGATGGGAAGAGAATTAAGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GATTTCAAGATACGGACTATTGAACTAGATGGGAAGAGAATTAAGCTGCA
EY894612       <-- ..................................................
FD575569       <-- ..................................................
EV537480       --> GATTTCAAGATACGGACTATTGAACTAGATGGGAAGAGAATTAAGCTGCA
FD571805       --> GATTTCAAGATACGGACTATTGAACTGGATGGGAAGAGAATTAAGCTGCA
EY898602       --> GATTTCAAGATACGGACTATTGAACTGGATGGGAAGAGAATTAAGCTGCA
EY930324       --> GATTTCAAGATACGGACTATTGAACTGGATGGGAAGAGAATTAAGCTGCA

               351    -    401
UN14419        --> AATCTGGGATACTGCTGGACAGGAGCGGTTCCGGACTATCACAACTGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- AATTTGGGATACTGCTGGACAGGAACGGTTCCGGACTATCACAACTGCAT
EY894612       <-- ..................................ACTATCACAACTACAT
FD575569       <-- ..................................................
EV537480       --> AATTTGGGATACTGCTGGACAGGAACGGTTCCGGACTATCACAACTGCAT
FD571805       --> AACCTGGGATACTGCTGGACAGGAGCGGTTCCGGACTATCACAACTGCAT
EY898602       --> AATCTGGGATACTGCTGGACAGGAGCGGTTCCGGACTATCACAACTACAT
EY930324       --> AATCTGGGATACTGCTGGACAGGAGCGGTTCCGGACTATCACAACTGCAT

               401    -    451
UN14419        --> ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA
EY894612       <-- ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA
FD575569       <-- .................................................A
EV537480       --> ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA
FD571805       --> ACTACCGTGGAGCCATGGGCATTTTGCTTGTCTATGATGTCACTGATGAA
EY898602       --> ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA
EY930324       --> ACTACCGTGGAGCCATGGGCATTTTGCTTGTGTATGATGTCACTGATGAA

               451    -    501
UN14419        --> TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
EY894612       <-- TCTTCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
FD575569       <-- TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
EV537480       --> TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
FD571805       --> TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
EY898602       --> TCTTCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC
EY930324       --> TCATCTTTCAACAACATCAGGAACTGGATCCGTAATATTGAGCAGCACGC

               501    -    551
UN14419        --> TTCTGATAATGTCAACAAGATTCTCGTGGGGAACAAGGCAGATATGGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- TTCTGATAATGTCAACAAGATTCTCGTGGGGAACAAGGCAGATATGGATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894612       <-- TTCTGATAATGTCAACAAGATTCTCGTGGGAAACAAGGCAGATATGGATG  Raphanus raphanistrum subsp. maritimus
FD575569       <-- TTCTGATAATGTCAACAAGATTCTCGTGGGGAATAAGGCAGATATGGATG  Raphanus sativus cv Early Scarlet Globe
EV537480       --> TTCTGATAATGTCAACAAGATTCTCGTGGGGAACAAGGCAGATATGGATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571805       --> TTCTGATAATGTCAACAAGATTCTCGTGGGGAATAAGGCAGATATGGATG  Raphanus sativus cv Early Scarlet Globe
EY898602       --> TTCTGATAATGTCAACAAGATTCTCGTGGGAAACAAGGCAGATATGGATG  Raphanus raphanistrum subsp. maritimus
EY930324       --> TTCTGATAATGTCAACAAGATTCTCGTGGGAAACAAGGCAGATATGGATG  Raphanus sativus var. oleiformis

               551    -    601
UN14419        --> AAAGCAAAAGGGCTGTGCCAACAGCTAAGGGACAAGCTCTTGCAGATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- AAAGCAAAAGGGCTGTGCCAACAGCTAAGGGACAAGCTCTTGCAGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894612       <-- AAAGCAAAAGAGCTGTGCCAACAGCTAAGGGACAAGCTCTTGCAGATGAA  Raphanus raphanistrum subsp. maritimus
FD575569       <-- AAAGCAAAAGGGCTGTGCCAACAGCTAAGGGCCAAGCTCTTGCAGATGAA  Raphanus sativus cv Early Scarlet Globe
EV537480       --> AAAGCAAAAGGGCTGTGCCAACAGCTAAGGGACAAGCTCTTGCAGATGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571805       --> AAAGCAAAAGGGCTGTGCCAACAGCTAAGGGCCAAGCTCTTGCAGATGAA  Raphanus sativus cv Early Scarlet Globe
EY898602       --> AAAGCAAAAGAGCTGTGCCAACAGC.........................  Raphanus raphanistrum subsp. maritimus
EY930324       --> AAAGCAAAAGAGCTGTGCCAACAGCTAAGGGACAAGCTCTTGCAGATGAA  Raphanus sativus var. oleiformis

               601    -    651
UN14419        --> TACGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- TACGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTAGA
EY894612       <-- TATGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTTGA
FD575569       <-- TACGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTTGA
EV537480       --> TACGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTAGA
FD571805       --> TACGGAATCAAGTTCTTCGAGACTAGTGCCAAGAC...............
EY898602       --> ..................................................
EY930324       --> TATGGAATCAAGTTCTTCGAGACTAGTGCCAAGACTAACTTAAACGTTGA

               651    -    701
UN14419        --> GGAAGTTTTCTTTTCAATTGGTAAAGACATTAAGCAAAGACTCGCAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GGAAGTTTTCTTCTCAATTGGTAAAGACATTAAGCAAAGACTCGCAGATA
EY894612       <-- GGAAGTTTTCTTTTCAATTGGTAAAGACATTAAGCAAAGACTCGCAGATA
FD575569       <-- GGAAGTTTTCTTTTCAATTGGTAAAGACATTAAGCAAAGACTCACAGATA
EV537480       --> GGAAGTTTTCTTCTCAATTGGTAAAGACATTAAGCAAAGACTCGCAGATA
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> GGAAGTTTTCTTTTCAATTGGTA...........................

               701    -    751
UN14419        --> CGGATGCAAGGGCTGAGCCACACACAATCAGAATCAACCAATCCGACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- CGGATGCAAGGGCTGAGCCACACACAATCAGAATCAACCAATCCGACCAA
EY894612       <-- CGGATGCAAGGGCTGAGCCACACACAATCAGAATCAACCAATCCGACCAA
FD575569       <-- CGGATGCAAGGGCTGAGCCACACACAATCAGAATGAACCAATCCGACCAG
EV537480       --> CG-ATGCAAGGGCTGAGCCACACACAATCAGAATCAACCAATCCGACCAA
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> ..................................................

               751    -    801
UN14419        --> GGTGCAGGGACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGTTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GG-GCAGAGACATCTCAAGCTACTCAGAAATCAGCATGCTGCGGTTCTTA
EY894612       <-- GGTGCAGGGACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGTTCTTA
FD575569       <-- GGTGCAGGGACATCTCAAGCTACTCAGAAATCAGCATGTTGCGGTTCTTA
EV537480       --> GG--CAGAGACATCTCAAGCTACTCAGAAATCAGCATGCTGCGGTTCTTA
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> ..................................................

               801    -    851
UN14419        --> GAGAATCAGGTTGAAGATATGAACATAGTATTTTCCTTTTCCACCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GAGAATCAGGTTGAAGATATGAACATAGTATTTTCCTTTTCCACCTTTGG
EY894612       <-- GAGAATCAGGTTGAAGATATGAACATAGTATTTTCCTTTTCCACCTTTGG
FD575569       <-- GAGAATCAGGTTGAAGATATGAACATAGTATTTTCCTTTTCCACCTTTGG
EV537480       --> GAGAtcagtt........................................
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> ..................................................

               851    -    901
UN14419        --> AAAGAATATAAAGAGTGAAAAATATCTTCAATGCTTTTTTT-CTACATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- AAAGAATATAAAGAGTGAAAAATGTCTTCAATGCTTTTTTT-CTACATGG
EY894612       <-- AAAGAATATAAAGAGTGAAAAATATCTTCAATGCTTTTTTTTCTACATGG
FD575569       <-- AAAGAATATAAAGAGTGAAAAATATCTTCAATGCTTTTTTT-CTACATGG
EV537480       --> ..................................................
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> ..................................................

               901    -    951
UN14419        --> GATGGTGTTGTTTTCTACCGTATTCTTTAAAATCTTTAATGTTCCTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- GATGGTGTTGTTTTCTACCGTATTCTTTAAAATCTTTAATGTTCCTC-TT
EY894612       <-- GATGGTGTTGTTTTCTACCGTATTCTTTGAAATTTTTAATGTTCCTCACT
FD575569       <-- GATGGTGTTGTTTTCTACCGTATTCTTTAAAATCTTTAATGTTCCTCACT
EV537480       --> ..................................................
FD571805       --> ..................................................
EY898602       --> ..................................................
EY930324       --> ..................................................

               951    -   1001
UN14419        --> TGGAAAAAGTTGCTATAAATATTTTTATTACTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541696       <-- TGGAAAAAGTTGCTATAAATATTTTTATT.....
EY894612       <-- TGGAAAAAGTTGCTATAGATATTTTTATTACc..
FD575569       <-- TGGAAAAAGTTGCTATAAATATTTTTATTACTAG
EV537480       --> ..................................
FD571805       --> ..................................
EY898602       --> ..................................
EY930324       --> ..................................