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Alignment for radish unigene UN14471

               -5     -     45
UN14471        --> ......ATCACTTCTCCATACAGCAAAATATTCTAAACAAGTTGAAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554005       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD545171       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> ....ggATCACTTCTCCATACAGCAAAATATTATAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> ....ggATCACTTCTCCATACAACAAAATATTCTAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. landra
FD558017       --> ggattcATCACTTCTCCATACAACAAAATATTCTAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. landra
FD978897       --> ggattcATCACTTCTCCATACAGCAAAATATTATAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> ....ggATCACTTCTCCATACAACAAAATATTCTAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. landra
EV550343       --> .......ggACTTCTCCATACAGCAAAATATTATAAACAAGTTGAAAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ..................................................  Raphanus raphanistrum subsp. landra

               45     -     95
UN14471        --> GCTTCCAAGGCATTAGTTTTGTTGGGTCTCTTTGCAATTCTTTTCGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- .............................................GTCAT  Raphanus raphanistrum subsp. landra
FD554005       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD545171       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> GCTTCCAAGGCATTAGTTTTGTTGGGTCTCTTTGTAATTCTTTTCGTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> GCTTCCAAGGTATTACTTTTGTTGGGTCTCTTTGCAATTCTTTTCGTCAT  Raphanus raphanistrum subsp. landra
FD558017       --> GCTTCCAAGGTATTACTTTTGTTGGGTCTCTTTGCAATTCTTTTCGTCAT  Raphanus raphanistrum subsp. landra
FD978897       --> GCTTCCAAGGCATTAGTTTTGTTGGGTCTCTTTGCAATTCTTTTCGTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> GCTTCCAAGGCATTACTTTTGTTGGGTCTCTTTGCAATTCTTTTCGTCAT  Raphanus raphanistrum subsp. landra
EV550343       --> GCTTCCAAGGCATTAGTTTTGTTGGGTCTCTTTGCAATTCTTTTC-TTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ..................................................  Raphanus raphanistrum subsp. landra

               95     -    145
UN14471        --> CTCAGAAGTTGCCGCGACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- CTCAGAAGTTGCCGCGACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. landra
FD554005       <-- .........TGCCGCCACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. landra
FD545171       <-- ...................TCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- ........................................TCAGAGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> CTCAGAAGTTGCCGCGGCGTCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> CTCAGAAGTTGCCGCCACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. landra
FD558017       --> CTCAGAAGTTGCCGCCACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. landra
FD978897       --> CTCAGAAGTTGCCGCGGCGTCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> CTCAGAAGTTGCCGCGACATCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. landra
EV550343       --> CTCAGAAGTTGCCGCGGCGTCCGAAGAGCAGTCATTGAAGTCAGAGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ..................................................  Raphanus raphanistrum subsp. landra

               145    -    195
UN14471        --> AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- AGGATACCTTACAACCTAACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. landra
FD554005       <-- AGGATACCTTACAACCTAACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. landra
FD545171       <-- AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- .........................................GGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> AGGATACCTTACAACCTAACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. landra
FD558017       --> AGGATACCTTACAACCTAACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. landra
FD978897       --> AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> AGGATACCTTACAACCTAACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. landra
EV550343       --> AGGATACCTTACAACCTGACCATGACCAATATGGTGGTGGTGGCCGCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ..................................................  Raphanus raphanistrum subsp. landra

               195    -    245
UN14471        --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD554005       <-- GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD545171       <-- GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
EV545658       <-- GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD975057       <-- GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
EX908817       <-- .................................................A
EX762687       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
EY922037       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD558017       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD978897       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
FD988313       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
EV550343       --> GGCAATGGAGGCTACAACGGAGGGGGAGGTTACAACGGAGGGGGAGGATA
EY921274       --> ..................................................

               245    -    295
UN14471        --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- CAATGGAGGCGGTGGATACAACGGAGG---AGGACACAACGGAGGAGGAC  Raphanus raphanistrum subsp. landra
FD554005       <-- CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAACGGAGGAGGAC  Raphanus raphanistrum subsp. landra
FD545171       <-- CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- CAACGGAGGGGGAGGATACAATGGAGGCGGAGGATACAACGGAGGAGGAC  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAACGGAGGAGGAC  Raphanus raphanistrum subsp. landra
FD558017       --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAACGGAGGAGGAC  Raphanus raphanistrum subsp. landra
FD978897       --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> CAATGGAGGCGGTGGATACAACGGAGG---AGGACACAACGGAGGAGGAC  Raphanus raphanistrum subsp. landra
EV550343       --> CAATGGAGGCGGAGGATACAACGGAGG---AGGACACAATGGAGGAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ..................................................  Raphanus raphanistrum subsp. landra

               295    -    345
UN14471        --> ACAACGGAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- ACAACGGAGGAGGACACAATGGAGGAGGACACAACGGAGGAGGCCGAGGT
FD554005       <-- ACAATGGAGGAGGACACAACGGAGGAGGATACAACGGTGGAGGCCGAGGT
FD545171       <-- ACAACGGAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
EV545658       <-- ACAACGTAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
FD975057       <-- ACAACGGAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
EX908817       <-- ACAACGGAGGAGGACACAATGGAGGAGGACACAACGGAGGAGGCCGAGGT
EX762687       --> ACAACGGAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
EY922037       --> ACAATGGAGGAGGACACAACGGAGGAGGATGCAACGGTGGAGGCCGAGGT
FD558017       --> ACAATGGAGGAGGACACAACGGAGGAGGATACAACGGTGGAGGCCGAGGT
FD978897       --> ACAACGGAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
FD988313       --> ACAACGGAGGAGGACACAATGGAGGAGGACACAACGGAGGAGGCCGAGGT
EV550343       --> ACAACGTAGGAGGACACAATGGAGGAGGATACAACGGAGGAGGCCGAGGT
EY921274       --> ..................................................

               345    -    395
UN14471        --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD554005       <-- GGAGGATACCACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD545171       <-- GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EV545658       <-- GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD975057       <-- GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EX908817       <-- GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EX762687       --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EY922037       --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD558017       --> GGAGGATACCACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD978897       --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
FD988313       --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EV550343       --> GGAGGATACAACGGAGGAGGCCGAGGAGGAGGTTACTGCCGCCACGGCTG
EY921274       --> .........................GAGGAGGTTACTGCCGCCACGGCTG

               395    -    445
UN14471        --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD554005       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD545171       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EV545658       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD975057       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EX908817       <-- CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EX762687       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EY922037       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD558017       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD978897       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
FD988313       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EV550343       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG
EY921274       --> CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGTTGCTCATATGCCGGAG

               445    -    495
UN14471        --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra
FD554005       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra
FD545171       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra
FD558017       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra
FD978897       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra
EV550343       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATAAACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> AAGCTGTTCAGACACAGCCCGGCCACTAAAAGTCGATAACGTATTAACC-  Raphanus raphanistrum subsp. landra

               495    -    545
UN14471        --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- ACCACCATATATGCAGTTATGTGTCTCTATGAGTACGAAACGTCGAAAAC
FD554005       <-- ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
FD545171       <-- ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
EV545658       <-- ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
FD975057       <-- ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
EX908817       <-- ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
EX762687       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
EY922037       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
FD558017       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
FD978897       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
FD988313       --> ACCACCATATATGCAGTTATGTGTCTCTATGAGTACGAAACGTCGAAAAC
EV550343       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC
EY921274       --> ACCACCATATATGCAGTTATGTGTCTTTATGAGTACGAAACGTCGAAAAC

               545    -    595
UN14471        --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra
FD554005       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra
FD545171       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra
FD558017       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra
FD978897       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra
EV550343       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGTGACTTTTAGTGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> CATCGTGGTGTGTTTGTAATGAATAATGATGTAAGCGACTTTTAGTGAAG  Raphanus raphanistrum subsp. landra

               595    -    645
UN14471        --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATG..
FD554005       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
FD545171       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
EV545658       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATac.
FD975057       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
EX908817       <-- GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
EX762687       --> GCCAGGATTGATTA....................................
EY922037       --> -CCAGGATTGA.......................................
FD558017       --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
FD978897       --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA
FD988313       --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATG..
EV550343       --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATac.
EY921274       --> GCCAGGATTGATTAAGAGGCCAAATTATGAGAATAAAGTTTGATTATGTA

               645    -    695
UN14471        --> ATGTCTTTGCGTTTGAGCTGTTATCTTTCGTGGCTGTCATAATAAAATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD984224       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD554005       <-- ATGTCTTTGCGTTTGAGCTGTTATCTTTCGTGGCTGTCATAATAAAATCG  Raphanus raphanistrum subsp. landra
FD545171       <-- ATGTCTTTGCGTTTGAGTTGTTATCTTTCGTGGCTGTCATAATAAAATCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV545658       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD975057       <-- ATGTCTCTGCGTTTGAGTTGTTATCTTTCGTGGCTGTCATAATAAAATCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908817       <-- ATGTCTTTGCGTTTGAGCTGTTATCTTTCGTGGCTGTCATAATAAAATCG  Raphanus sativus cv Rat-Tail Radish #3870
EX762687       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY922037       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558017       --> ATGTCTTTGCGTTTGAGCTGTTATCTTTCGT...................  Raphanus raphanistrum subsp. landra
FD978897       --> ATGTCTCTGCGTTTGAGTTGTTATCTTTCGTGGCTGTCATAATAAAATCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988313       --> ..................................................  Raphanus raphanistrum subsp. landra
EV550343       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY921274       --> ATGTCTTTGCGTTTGAGCTGTTATCTTTCGTGGCCGTCATAATAAAATCG  Raphanus raphanistrum subsp. landra

               695    -    745
UN14471        --> TTTGTAGTTTATGGTATTC
                   ~~~~~~~~~~~~~~~~~~~
FD984224       <-- ...................
FD554005       <-- TTTGTAGTT..........
FD545171       <-- TTTGTAGTTT.........
EV545658       <-- ...................
FD975057       <-- TTTGTAGTTTATGGTATTC
EX908817       <-- TTTGTAGTTTATG......
EX762687       --> ...................
EY922037       --> ...................
FD558017       --> ...................
FD978897       --> TTTGTAGTTTATGGTATTC
FD988313       --> ...................
EV550343       --> ...................
EY921274       --> TTTGTAGTT..........