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Alignment for radish unigene UN14520

               1      -     51
UN14520        --> GCAAGTTCCTACTAGACGATCAAAGTGGAACCAAAGAGAAATAATTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- ..................................................
EX749026       <-- ..................................................
FD532531       <-- ..................................................
FD988322       <-- ..................................................
EX754753       <-- ..................................................
FD572495       <-- ..................................................
EX761843       <-- ..................................................
FD970687       <-- ..................................................
FD966992       --> GCAAGTTCCTACTAGACGATCAAAGTGGAACCAAAGAGAAATAATTGGAT
FD576132       --> ..........................GGAACCAAAGAGAAATAATTGGAT
FD984232       --> ..................................................
EX774112       --> ..................................................
EX766231       --> ..................................................
EV573180       --> ..................................................
EX752821       --> ..................................................

               51     -    101
UN14520        --> CACGAGGACAATCCACAAAAGATATCATTCAAAACTAGGGTTTATAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- ..................................................
EX749026       <-- ..................................................
FD532531       <-- ..................................................
FD988322       <-- ..................................................
EX754753       <-- ..................................................
FD572495       <-- ..................................................
EX761843       <-- ..................................................
FD970687       <-- ..................................................
FD966992       --> CACGAGGACAATCCACAAAAGATATCATTCAAAACTAGGGTTTATAACAA
FD576132       --> CACGAGGACAATCCACAAAAGATATCATTCAAAAATAGGGTTTATAACAA
FD984232       --> .ACGAGGACAATCCACAAAAGATATCATTCAAAACTAGGGTTTATAACAA
EX774112       --> ......ggCAATCCACAAAAGATATCATTCAAAACTAGGGTTTATAACAA
EX766231       --> .........................CATTCAAAACTAGGGTTTATAACAA
EV573180       --> ...........................................ATAACAA
EX752821       --> ..................................................

               101    -    151
UN14520        --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- ....AAATAAGT-GAGCTACGCTGCGTAATT-CTTGAACAAGAGTCAATG
EX749026       <-- ..................................................
FD532531       <-- ..................................................
FD988322       <-- ..................................................
EX754753       <-- ..................................................
FD572495       <-- ..................................................
EX761843       <-- ..................................................
FD970687       <-- ..................................................
FD966992       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
FD576132       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
FD984232       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
EX774112       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
EX766231       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
EV573180       --> ATTTAAATAAGTTGAGCTACGCTGCGTAATTTCTTGAACAAGAGTCAATG
EX752821       --> ..................................................

               151    -    201
UN14520        --> AAAACTGTAAACAAGGTTGTCCGAGAGTTTTTTTTT--GTGTTTCTCGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AAAACTGTAAACAAGGTTGTCCGAGAGTTTTTTTTT-TGTGTTTCTCGAC
EX749026       <-- ............................................CTCGAC
FD532531       <-- ............................................CTCGAC
FD988322       <-- ..................................................
EX754753       <-- ..................................................
FD572495       <-- ..................................................
EX761843       <-- ..................................................
FD970687       <-- ..................................................
FD966992       --> AAGACTGTAAACAAGGTTGTCCGAGAGTTTTTTTTT--GTGTTTCTCGAC
FD576132       --> AAAACTGTAAACAAGGTTGTCCGAGAGTTTTTTTTT-TGTGTTTCTCGAC
FD984232       --> AAAACTGTAAACAAGGTTGTCCGAAAGTTTTTTTTT--GTGTTTCTCGAC
EX774112       --> AAAACTGTAAACAAGGTTGTCCGAAAGTTTTTTTTTTTGTGTTTCTCGAC
EX766231       --> AAAACTGTAAACAGGGTTGTCCGAGAGTTTTTTTTT--GTGTTTCTCGAC
EV573180       --> AAAACTGTAAACAAGGTTGTCCGAAAGTTTTTTTTT-TGTGTTTCTCGAC
EX752821       --> ............................................CTCGAC

               201    -    251
UN14520        --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
EX749026       <-- TGAAGATTATGAAAGGAAAACTATATCGCAT-ACCCGTAGACTTCAGT-G
FD532531       <-- TGAAGATTATGAAAGGAAAACTATATCGCAT-ACCCGTAGACTTCAGT-G
FD988322       <-- ..................................................
EX754753       <-- ..................................................
FD572495       <-- ..................................................
EX761843       <-- ..................................................
FD970687       <-- ..................................................
FD966992       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
FD576132       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
FD984232       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
EX774112       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
EX766231       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
EV573180       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG
EX752821       --> TGAAGATTATGAAAGGAAAACTATATCGCATTACCCGTAGACTTCAGTTG

               251    -    301
UN14520        --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATC
EX749026       <-- AAAAGTCCAGGGTT-AGCCAGTC-TTGGTGATATCATCAAGATGGTCATC
FD532531       <-- AAAAGTCCAGGGTTTAGCCAGTC-TTGGTGATATCATCAAGATGGTCATC
FD988322       <-- ..AAGTCCAGGGTTTAGCCAGTCTTTG-TGATATCATCAAGATGGTCATC
EX754753       <-- .......CAGGGTTTAGCCAGTC-TTGGTGATATCATCAAGATGATCATC
FD572495       <-- ...........................GTGACATCATCAAGATGGTCATC
EX761843       <-- ............................TGATGTCATCAAGATGGTCATC
FD970687       <-- ..................................................
FD966992       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGATCATC
FD576132       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGACATCATCAAGATGGTCATC
FD984232       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATC
EX774112       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCAT-
EX766231       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATGTCATCAAGATGGTCATC
EV573180       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATC
EX752821       --> AAAAGTCCAGGGTTTAGCCAGTCCTTGGTGATATCATCAAGATGGTCATC

               301    -    351
UN14520        --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
EX749026       <-- AACATCTGTGACGTC-TTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD532531       <-- AACATCTGTGACGTC-TTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD988322       <-- AACATCTGTGACAT-CTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
EX754753       <-- AACATCTGTGACGTC-TTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD572495       <-- AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
EX761843       <-- AAAATCTGTGACGTCGTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD970687       <-- ..................................................
FD966992       --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD576132       --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
FD984232       --> AACATCTGTGACATCCTTCCATTTCTCAAATGAAATGTAATCTGACAAAA
EX774112       --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
EX766231       --> AAAATCTGTGACGTCCTTCCATTTCTCAAATGAAATGTAATCTGACAAAA
EV573180       --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA
EX752821       --> AACATCTGTGACGTCCTTCCATTTCTCAGATGAAATGTAATCTGACAAAA

               351    -    401
UN14520        --> CTACATTGGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- CTACATTCGCCGAGGGCTCTTTCAACAGTAGCTTGCTTCCTCCATCTGCC  Raphanus raphanistrum subsp. landra
EX749026       <-- CTACATTGGCTGAGGGCTCTTTCAAGGGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. maritimus
FD532531       <-- CTACATTGGCTGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. maritimus
FD988322       <-- CTACATTCGCCGAGGGCTCTTTCAACAGTAGCTTGCTTCCTCCATCTGCC  Raphanus raphanistrum subsp. landra
EX754753       <-- CTACATTGGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- CTACATTCGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCC  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- CTACATTGGCTGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> CTACATTGGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> CTACATTCGCCGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCC  Raphanus sativus cv Early Scarlet Globe
FD984232       --> CTACATTCGCCGAGGGCTCTTTCAACAGTAGCTTGCTTCCTCCATCTGCC  Raphanus raphanistrum subsp. landra
EX774112       --> CTACATTCGCCGAGGGCTCTTTCAACAGTAGCTTGCTTCCTCCATCTGCC  Raphanus raphanistrum subsp. landra
EX766231       --> CTACATTGGCTGAGGGCTCTTTCAAGAGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> CTACATTCGCCGAGGGCTCTTTCAACAGTAGCTTGCTTCCTCCATCTGCC  Raphanus raphanistrum subsp. landra
EX752821       --> CTACATTGGCTGAGGGCTCTTTCAAGGGTAGCTTGCTTCCTCCATCTGCT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN14520        --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX749026       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD532531       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD988322       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX754753       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD572495       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX761843       <-- CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD970687       <-- ..............................TTCACACAAAGCTGCATCAC
FD966992       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD576132       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
FD984232       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX774112       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX766231       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EV573180       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC
EX752821       --> CCAACCACTCTCCAGTTCTTGGAAGCATCTTTCACACAAAGCTGCATCAC

               451    -    501
UN14520        --> AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus raphanistrum subsp. landra
EX749026       <-- AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. maritimus
FD532531       <-- AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. maritimus
FD988322       <-- AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus raphanistrum subsp. landra
EX754753       <-- AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus sativus cv Early Scarlet Globe
FD984232       --> AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus raphanistrum subsp. landra
EX774112       --> AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus raphanistrum subsp. landra
EX766231       --> AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> AGGGCTTCGCTCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTGTTCA  Raphanus raphanistrum subsp. landra
EX752821       --> AGGGCTTCGATCTTTACCCTTTGATAAGGCTTCAAGCTTTTTGTTATTCA  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN14520        --> ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. landra
EX749026       <-- ACAATAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. maritimus
FD532531       <-- ACAATAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. maritimus
FD988322       <-- ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. landra
EX754753       <-- ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- ACAATAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus sativus cv Early Scarlet Globe
FD984232       --> ACAAGAAAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. landra
EX774112       --> ACAAGAAAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. landra
EX766231       --> ACAATAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> ACAAGAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. landra
EX752821       --> ACAATAGAATAGGTGCAGGAGGGAAATAGCGAGAGATGTGATCACCAATG  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN14520        --> TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. landra
EX749026       <-- TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. maritimus
FD532531       <-- TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. maritimus
FD988322       <-- TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. landra
EX754753       <-- TTCTTAGCCACACCACAGAGCTCCACATCATCGAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- TTCTTAGCCACACCGCAGAGCTCGACATCATCAAACCTCTCGTTGGCGTG  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- TTCTTAGCCACACCACAGAGCTCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- TTCTTAGCCACACCACAGAGCTCCACATCATCGAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> TTCTTAGCCACACCACAGAGCTCCACATCATCGAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> TTCTTAGCCACACCGCAGAGCTCGACATCATCAAACCTCTCGTTGGCGTG  Raphanus sativus cv Early Scarlet Globe
FD984232       --> TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. landra
EX774112       --> TTCTTAGCCACACCACAGAAATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. landra
EX766231       --> TTCTTAGCCACACCACAGAGCTCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> TTCTTAGCCACACCACAGAGATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. landra
EX752821       --> TTCTTAGCCACACCACAGAAATCCACATCATCAAACCTCTCGTTGGCGTG  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN14520        --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX749026       <-- AAAGTGGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD532531       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD988322       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX754753       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD572495       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX761843       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD970687       <-- AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD966992       --> ..................................................
FD576132       --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
FD984232       --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX774112       --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX766231       --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EV573180       --> AAAGTAGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA
EX752821       --> AAAGTGGCCAACAATACTCAAACCTTGAGCCACGTAATGCTCCTCTATCA

               651    -    701
UN14520        --> TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTTAGAGTGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGAAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. landra
EX749026       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGAAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. maritimus
FD532531       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGAAGAGCGAGGTTAGAGTGAGAG  Raphanus raphanistrum subsp. maritimus
FD988322       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGAAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. landra
EX754753       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAACGAGGTTAGAGTGAAAG  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAACGAGGTTAGAGTGAAAG  Raphanus sativus cv Early Scarlet Globe
FD984232       --> TGATGAGGGAGAT.....................................  Raphanus raphanistrum subsp. landra
EX774112       --> TGATGAGGG.........................................  Raphanus raphanistrum subsp. landra
EX766231       --> TGATGAGGGAGATCTCGAGAGGAGGAAGGAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> TGATGAGGGAGATCTCGAGAGGAGGAAGAAGA..................  Raphanus raphanistrum subsp. landra
EX752821       --> TGATGAGGGAGATCTCGAGAGGAGGAAGAAGAGCGAGGTTAGAGTGAAAG  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN14520        --> AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. landra
EX749026       <-- AGCGGCACGGAGTCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. maritimus
FD532531       <-- AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. maritimus
FD988322       <-- AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. landra
EX754753       <-- AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- AGCGGGACGGAGTCGGATATCTCCACGAGGCCTTCGTCCTTGGGGCTGAT  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- AGCGGGACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTGGGGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- AGCGGCACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> AGCGGGACGGAGTCGGATATCTCCACGAGGCCTTCGTCCTTGGGGCTGAT  Raphanus sativus cv Early Scarlet Globe
FD984232       --> ..................................................  Raphanus raphanistrum subsp. landra
EX774112       --> ..................................................  Raphanus raphanistrum subsp. landra
EX766231       --> AGCGGGACGGAATCGGAGATCTCCACGAGGCCTTCGTCCTTGGGGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> ..................................................  Raphanus raphanistrum subsp. landra
EX752821       --> AGCGGCACGGAGTCGGAGATCTCCACGAGGCCTTCGTCCTTAGGGCTGAT  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN14520        --> TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
EX749026       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
FD532531       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
FD988322       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
EX754753       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
FD572495       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
EX761843       <-- TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
FD970687       <-- TCGACCGACGAGGACTCCGTTGGCCGCCGCCGTCTTGTGACGCAGCGAGT
FD966992       --> ..................................................
FD576132       --> TCGACCGACGAGGACTCCGTgac...........................
FD984232       --> ..................................................
EX774112       --> ..................................................
EX766231       --> TCGACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGACGCAGCGAGT
EV573180       --> ..................................................
EX752821       --> TCGACCG...........................................

               801    -    851
UN14520        --> GGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCGTACTTCAATTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- GGAGAACGAGTTTGATGTACGCGTCCTGCGAGATCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. landra
EX749026       <-- GGAGAACGAGTTTGATGTACGCGTCCTGCGAGATCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. maritimus
FD532531       <-- GGAGAACGAGTTTGATGTACGCGTCCTGCGAGATCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. maritimus
FD988322       <-- GGAGAACGAGTTTGATGTACGCGTCCTGCGAGATCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. landra
EX754753       <-- GGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- GGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCATACTTCAATTCC  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- GGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCATACTTCAATTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- GGAGAACGAGTTTGATGTACGCGTTCTGCGAGGTCTCGTACTTCAATTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD984232       --> ..................................................  Raphanus raphanistrum subsp. landra
EX774112       --> ..................................................  Raphanus raphanistrum subsp. landra
EX766231       --> GGAGAACGAGTTTGATGTACGCGTTCTGCGAGATCTCATACTTCAATTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> ..................................................  Raphanus raphanistrum subsp. landra
EX752821       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN14520        --> CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCG---ATTCGATCGGAGGAG
EX749026       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
FD532531       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
FD988322       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
EX754753       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
FD572495       <-- CCG...............................................
EX761843       <-- CCGTTGTTACTCCCCATCCCTACCCTACCTAACTCGATCGGA-GGAGGAG
FD970687       <-- CCGTTGTTACTCCCCATCCCTACC-TAACTCGATCGATCGGACGGAGGAG
FD966992       --> ..................................................
FD576132       --> ..................................................
FD984232       --> ..................................................
EX774112       --> ..................................................
EX766231       --> CCGTTGTTACTCCCCATCCCTACC-TAcctaactcg..............
EV573180       --> ..................................................
EX752821       --> ..................................................

               901    -    951
UN14520        --> ACTCACTGATGATG----ATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- ACTCACTGATGATG----ATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
EX749026       <-- ACTCACTGATGATG----AATCAGTTCTTAAATCTCCACTCGCTGAGAAT
FD532531       <-- ACTCACTGATGATG----ATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
FD988322       <-- ACTCACTGATGATG----ATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
EX754753       <-- ACTCACTGATGATGGATGATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
FD572495       <-- ..................................................
EX761843       <-- ACTCACAGATGATG----ATTCGGTTCTTAAATCTCCACTCGCTGAGAAT
FD970687       <-- ACTCACTGATGATGGATGATTCAGTTCTTAAATCTCCACTCGCTGAGAAT
FD966992       --> ..................................................
FD576132       --> ..................................................
FD984232       --> ..................................................
EX774112       --> ..................................................
EX766231       --> ..................................................
EV573180       --> ..................................................
EX752821       --> ..................................................

               951    -   1001
UN14520        --> TATCAAGTCGCGGCGTAATCGAGAGAGACAACGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568457       <-- TATCAAGTCGCAGCGTcc...................  Raphanus raphanistrum subsp. landra
EX749026       <-- TATCAAGTCGCGGCGTAATCcc...............  Raphanus raphanistrum subsp. maritimus
FD532531       <-- TATCAAGTCGCGGCGTcc...................  Raphanus raphanistrum subsp. maritimus
FD988322       <-- TATCAAGTCGCGGCGTAATCcc...............  Raphanus raphanistrum subsp. landra
EX754753       <-- TATCAAGTCGCAGCGTAATCcc...............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD572495       <-- .....................................  Raphanus sativus cv Early Scarlet Globe
EX761843       <-- TATCAAGTCGCGGCGTAATCGAGAGAGACAACGTTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970687       <-- TATCAAGTCGCAGCGTAATCGAGAGAccc........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966992       --> .....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576132       --> .....................................  Raphanus sativus cv Early Scarlet Globe
FD984232       --> .....................................  Raphanus raphanistrum subsp. landra
EX774112       --> .....................................  Raphanus raphanistrum subsp. landra
EX766231       --> .....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573180       --> .....................................  Raphanus raphanistrum subsp. landra
EX752821       --> .....................................  Raphanus raphanistrum subsp. maritimus