1      -     51
UN14570        --> GGAAATCGGAGTCGCCAAAGAGAAAAAAAA-GAAAAGGAGAGGTTTGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- GGAAATCGGAGTCGCCAAAGAGAAAAAAAA-GAAAAGGAGAGGTTTGGGT
EY927088       <-- ....................................GGAGAGGTTTGGGT
EV545846       <-- ..................................................
EY915204       --> GGAAATCGGAGTCGCCAAAGAGAAAAAAAA-GAAAAGGAGAGGTTTGGGT
FD941077       --> .....ggGGAGTCGCCGAAGAGAAAAAAAAAGAAAAGGAGAGGTTTGGGT
FY451512       --> ...............................................tgg
FY449980       --> ..................................................
EV550572       --> ..................................................

               51     -    101
UN14570        --> AGAGAAGGGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- AGAGAAGGGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
EY927088       <-- AGAGAAGGGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
EV545846       <-- ...............gGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
EY915204       --> AGAGAAGGGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
FD941077       --> AGAGAAGGGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
FY451512       --> gGAGAAGGGAGATCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
FY449980       --> ......gaGA--TCGCGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG
EV550572       --> ...............gGAAGACGAAAATGGAGGTTCCAGGTTCATCGAAG

               101    -    151
UN14570        --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCGAAAGTACCTCTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCGAAAGTACCTCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927088       <-- AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCCAAAGTACCGCTCGG  Raphanus sativus var. oleiformis
EV545846       <-- AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCGAAAGTACCTCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915204       --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCGAAAGTACCTCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941077       --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCCAAAGTACCGCTCGG  Raphanus sativus var. oleiformis
FY451512       --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCCAAAGTACCTCTCGG  Raphanus sativus cv GSK3-1
FY449980       --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCCAAAGTACCTCTCGG  Raphanus sativus cv GSK3-1
EV550572       --> AAGATGATCGCAACGCAGGAAGAGATGGTTGAAGCGAAAGTACCTCTCGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN14570        --> ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
EY927088       <-- ATACAGAGATCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
EV545846       <-- ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
EY915204       --> ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
FD941077       --> ATACAGAGATCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
FY451512       --> ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
FY449980       --> ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC
EV550572       --> ATACAGAGACCAGTGCGCTCATCTCCTGATCCCGCTCAACAAATGTCGCC

               201    -    251
UN14570        --> AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- AGGCCGAGTTCTTCCTCCCGTGGAAGTTCGAGGACGAGCGCCACGTGTAC
EY927088       <-- AGGTCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
EV545846       <-- AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
EY915204       --> AGGCCGAGTTCTTCCTCCCGTGGAAGTTCGAGGACGAGCGCCACGTGTAC
FD941077       --> AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
FY451512       --> AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
FY449980       --> AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC
EV550572       --> AGGCCGAGTTCTTCCTCCCGTGGAAGTGCGAGGACGAGCGCCACGTGTAC

               251    -    301
UN14570        --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
EY927088       <-- GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATACTCGCGATGCAGAA
EV545846       <-- GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
EY915204       --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
FD941077       --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCGGAA
FY451512       --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
FY449980       --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA
EV550572       --> GAGAAGTGCGAGTACGAGCTCGTGATGGAGAGGATGCTCGCGATGCAGAA

               301    -    351
UN14570        --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
EY927088       <-- GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
EV545846       <-- GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
EY915204       --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
FD941077       --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
FY451512       --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
FY449980       --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG
EV550572       --> GATCCGCGAGGAAGAAGCCAAGGCTAAACAGAATAAGATACAAGGGAAGG

               351    -    401
UN14570        --> GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
EY927088       <-- GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
EV545846       <-- GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
EY915204       --> GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
FD941077       --> GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA
FY451512       --> GTGTTCCTCTTATCCCTAAAACCGCGAATGCTTAGCCCTAATCGATTCGA
FY449980       --> GTGTTCCTCTTATCCCTAAAACCGCGAATGCTTAGCCCTAATCGATTCGA
EV550572       --> GTGTTCCTCTTATCCCTAAAACCGCTAATGCGTAGCCCTAATCGATTCGA

               401    -    451
UN14570        --> TCTTCCAGCTTCCCCCGGGATTCTCTGGAACTGTGAAGAAG-G-TGGGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- TCTTCCAGCTTCCCCCGGGATTCTCTGGAACTGTGAAGAAG-G-TGGGGC
EY927088       <-- TCTTCCAGCTTCCCCCGGGATTCTCTGGAACTGTGAAGAAGTG-TGGGGC
EV545846       <-- TCTTCCAGCTTCCCCCGGGATTTTCTGGAACTGTGAAGAAG-G-TGGGGC
EY915204       --> TCTTCCAGCTTCCCCCGGGATTCTCTGGAACTGTGAAGAAG-G-TGGGGC
FD941077       --> TCTTCCAGCTTCCCCCGGGATTCTCCGGAACTGTGAAGAAG-GGTGGGGC
FY451512       --> TCTTCCAGCTTCCCC-GGGATTCTCTGGAACTGTGAAGAAG-GATGGGGC
FY449980       --> TCTTCCAGCTTCCCC-GGGATTCTCTGGAACTGTGAAGAAG-GATGGGGC
EV550572       --> TCTTCCAGCTTCCCCCGGGATTCTCTGGAACTGTGAAGAAG-G-TGGGGC

               451    -    501
UN14570        --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927088       <-- TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTGC  Raphanus sativus var. oleiformis
EV545846       <-- TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915204       --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941077       --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTGC  Raphanus sativus var. oleiformis
FY451512       --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTGC  Raphanus sativus cv GSK3-1
FY449980       --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTGC  Raphanus sativus cv GSK3-1
EV550572       --> TCTGCTTTTCAGTATTTTCTTCTTGTTGGTGATGAAAAGTTTGTTGCTAC  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN14570        --> ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927088       <-- ATTTTCAGGATTATTATCTCCTCCCTTTTCGTTTTTTTT-CCTTCCTCTT  Raphanus sativus var. oleiformis
EV545846       <-- ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915204       --> ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941077       --> ATTTTCAGGATTATTATCTCCTCCCTTTTCGTTTTTTTT-CCTTCCTCTT  Raphanus sativus var. oleiformis
FY451512       --> ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCCTCTT  Raphanus sativus cv GSK3-1
FY449980       --> ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCCTCTT  Raphanus sativus cv GSK3-1
EV550572       --> ATTTTCAGGATTATTATCTCC---CTTTTCGTTTTTTTTTCCTTCTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN14570        --> GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAGACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927088       <-- GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAAACA  Raphanus sativus var. oleiformis
EV545846       <-- GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915204       --> GTTTAACTATGTGAAACT................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD941077       --> GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAAACA  Raphanus sativus var. oleiformis
FY451512       --> GTTTAACT--GTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAAACA  Raphanus sativus cv GSK3-1
FY449980       --> GTTTAACT--GTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAAACA  Raphanus sativus cv GSK3-1
EV550572       --> GTTTAACTATGTGAAACTGTTTCACATAAAAAGAAAATAAGATGCAGACC  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN14570        --> CTCATCTTTTTGTTGGTTTTCTATCTTTAATCCTTGAGAAAGAAAGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY911096       <-- CTCATCTTTTTGTTGGTTTTCTATCTTTAATCaaagaaagaaaattgaac
EY927088       <-- CTCATCTTTTTGTTGGTTTTCc............................
EV545846       <-- CTCATCTTTTTGTTGGTTTTCTATCTTTAATCaaagaaagaaaattgaac
EY915204       --> ..................................................
FD941077       --> CTCATCTTTTTGTTGGTTTTCTATCTTTAATCCTTGAGAAAGAAAGAAAA
FY451512       --> CTCATATTTTTGTTGGTTTTCTATCTTT......................
FY449980       --> CTCATATTTTTGTTGGTTTTCTATCTTT......................
EV550572       --> CTCATCTTTTTGTTGGTTTTCTATCTTTAATCaaagaaagaaaattgaac

               651    -    701
UN14570        --> TTG.
                   ~~~~
EY911096       <-- atat
EY927088       <-- ....
EV545846       <-- ac..
EY915204       --> ....
FD941077       --> TTG.
FY451512       --> ....
FY449980       --> ....
EV550572       --> ac..