Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN14630

               -2     -     48
UN14630        --> ...GTTCACCAATAAGATATTTTATTCAACCTCCATCCACCGTCCGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> ggaGTTCACCAATAAGATATTTTATTCAACCTCCATCCACCGTCCGGAGT
FD556094       --> .ggGTTCACCAATAAGATATTTTATTCAACCTCCATCCACCGTCCGGAGC
EY913987       --> .................................gATCCACCGTCCGGAGC
HS106819       --> ......................gcacgaggcttcctcctttGTCCGGAGC
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               48     -     98
UN14630        --> AGAACAAAGAGAAGAGGATCAAA-TGACGCCGACTATCTTTACTCCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> AGAACAAAGAGAAGAGGATCAAA-TGACGCCGACTATCTTTACTCCGACG
FD556094       --> AGAACAAAGAGAAGAGGATCAAA-TGACGCCGACTATCTTTACTCCGACG
EY913987       --> AGAACAAAGAGAAGAGGATCAAA-TGACGCCGACTATCTTTACTCCGACG
HS106819       --> AGAACAAAGAGAAGAGGATCAAAATGACGCCGACTATCTTTACTCCCACG
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               98     -    148
UN14630        --> ACTCTTCCTCCCTCGACTATTACATGGCCATGTACCACCACACCTCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> ACTCTTCCTCCCTCGACTATTACATGGCCATGTACCACCACACCTCAGAA
FD556094       --> ACTCTTCCTCCCTCGACTATTACATGGCCATGTACCACCACACCTCAGAA
EY913987       --> ACTCTTCCTCCCTCGACTATTACATGGCCATGTACCACCACACCTCAGAA
HS106819       --> ACTCTTCCTCCCTCGACTACTACATGGCCATGTACCACCACACCTCAGAA
FD543909       --> ...............................GTACCACCACACCTCAGAA
FD543167       --> ........................................gACCTCAGAA
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               148    -    198
UN14630        --> GCTCACTACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> GCTCACTACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
FD556094       --> GCTCACTACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
EY913987       --> GCTCACTACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACATCAT
HS106819       --> GCTCACTACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
FD543909       --> GCTCACCACCACTATAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
FD543167       --> GCTAACCACCATTAGAACACCTTTCAAGCTCAAGTGTAGAGCTACTTCAT
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               198    -    248
UN14630        --> CATCTTCCATCACAGACTTTGATCTTTACGACCTCTTAGGTATCGACCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX774965       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD555272       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX770830       --> CATCTTCCATCACAGACTTTGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus raphanistrum subsp. landra
FD556094       --> CATCTTCCATCACAGACTTTGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus raphanistrum subsp. landra
EY913987       --> CATCTTCCATCACAGACTTTGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
HS106819       --> CATCTTCCATCACAGACTTCGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus sativus var. niger
FD543909       --> CATCTTCCATCACAGACTTCGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543167       --> CATCTTCCATCACAGACTTCGATCTTTACGACCTCTTAGGTATCGACCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898267       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD540573       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559593       --> ..................................................  Raphanus raphanistrum subsp. landra

               248    -    298
UN14630        --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
FD556094       --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
EY913987       --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
HS106819       --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
FD543909       --> GGATCCGACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
FD543167       --> GGATCCAACAAGTCTCAGATCAAAGCAGCTTATCGTAACTTGCAAAAACG
EX898267       --> .....................................gCTTTCAAAAACG
FD540573       --> ..................................................
FD559593       --> ..................................................

               298    -    348
UN14630        --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
FD556094       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
EY913987       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
HS106819       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
FD543909       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
FD543167       --> TTGTCATCCAGATATCGCAGGAGTCCCAGGCCACGACATGGCCATCATAC
EX898267       --> TTGTCATCCAGATATCGCAGGAGTTCCAGGCCACGACATGGCCATCATAC
FD540573       --> ..................................................
FD559593       --> ..................................................

               348    -    398
UN14630        --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
FD556094       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
EY913987       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
HS106819       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
FD543909       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
FD543167       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
EX898267       --> TTAACGAGGCTTACAAGCTTCTGTCTGATCCTATCTCACGCCAAGCCTAT
FD540573       --> ...............................gATCTCACGCCAAGCCTAT
FD559593       --> ..................................................

               398    -    448
UN14630        --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX774965       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD555272       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX770830       --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. landra
FD556094       --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. landra
EY913987       --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
HS106819       --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus sativus var. niger
FD543909       --> GATAAGGAACAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543167       --> GATAAGGAACAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898267       --> GATAAGGAGCAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus sativus cv Early Scarlet Globe
FD540573       --> GATAAGGAACAAGCGAAACTGGAAGAGCTTAGAGGCTACACAGGGAAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559593       --> ..................................................  Raphanus raphanistrum subsp. landra

               448    -    498
UN14630        --> TATCTACTCGGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX774965       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD555272       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX770830       --> AATCTACTCGGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. landra
FD556094       --> AATCTACTCGGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. landra
EY913987       --> TATCTACTCGGTTTGGTGCGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
HS106819       --> TATCTACTCGGTTTGGTGCGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus sativus var. niger
FD543909       --> TATCTACTCTGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543167       --> TATCTACTCTGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898267       --> AATCTACTCGGTTTGGTGTGGACCAGAGACAGGGCAACGAGCTGTGTTTG  Raphanus sativus cv Early Scarlet Globe
FD540573       --> TATCTACTCTGTTTGGTGTGGACCAGAGACAGAGCAACGAGCTGTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559593       --> ..................................................  Raphanus raphanistrum subsp. landra

               498    -    548
UN14630        --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
FD556094       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
EY913987       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
HS106819       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
FD543909       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
FD543167       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
EX898267       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
FD540573       --> TAGATGAGGTCAAGTGCGTTGGTTGCTTGAAGTGTGCTTTGTGTGCAGAG
FD559593       --> ..................................................

               548    -    598
UN14630        --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
FD556094       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
EY913987       --> AGAACGTTCGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
HS106819       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
FD543909       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
FD543167       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
EX898267       --> AGAACGTTCGCTATAGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
FD540573       --> AGAACGTTTGCTATCGAAACAGCTCACGGGAGAGCTAGGGTTGTCGCTCA
FD559593       --> ..................................................

               598    -    648
UN14630        --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> GTGGGCTGACCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
FD556094       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGC........
EY913987       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
HS106819       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGGCCCA
FD543909       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
FD543167       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
EX898267       --> GTGGGCTGATCCTGAGTCCAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
FD540573       --> GTGGGCTGATCCTGAGTCTAAAATCAAAGAAGCTATCGAAGCTTGCCCCA
FD559593       --> ..................................................

               648    -    698
UN14630        --> TAGACTGCATCTCAATGGTGGAGAGATCTGATCTAGCGCCATTGGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> TAGACTGCATCTCA-TGGTGGAGAGATCTGATCTAGCGCCATTGGAGTTT
FD556094       --> ..................................................
EY913987       --> TAGACTGCATCTCAATGGTGGAGAGATCTGATCTAGCGCCATTGGAGTTT
HS106819       --> TAGACTGCATCTCAATGGTGGAGAGATCTGATCTAGCGCCATTGGAGTTT
FD543909       --> TAGACTGCATCTCAATGGTGGAGAGATCTGACCTAGCGCCATTGGAGTTT
FD543167       --> TAGACTGCATCTCAATGGTGGAGAGATCTGACCTAGCGCCATTGGAGTTT
EX898267       --> TAGACTGCATCTCGATGGTGGAGAGATCTGATCTAGCGCCATTGGAGCTT
FD540573       --> TAGACTGCATCTCAATGGTGGAGAGATCCGACCTAGCGCCATTGGAGTTT
FD559593       --> ..................................................

               698    -    748
UN14630        --> CTTATGTCAAAGCAGCCTCGAGGAAACGTGAGGATAGGGGTTGGGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ..................................................
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> CTTATGTCAA-GCAGCt.................................
FD556094       --> ..................................................
EY913987       --> CTTATGTCAAAGCAGCCTCGAGGAA-CGTGAGG.................
HS106819       --> CTTATGTCAAAGC.....................................
FD543909       --> CTTATGTCAAAGCAGCCT................................
FD543167       --> CTTATGTCAAAGCAGCCTCGAGGAAACGTGAGGATAGGGGTTGGGAACAC
EX898267       --> CTTATGTCAAAGCAGCCTCGAGGAAACGTGAGGATAGGGGTTGGGAACAC
FD540573       --> CTTATGTCAAAGCAGCCTCGAGGAAACGTGAGGATAGGGGTGGGGAACAC
FD559593       --> ..................................................

               748    -    798
UN14630        --> GGTTGGTGAGCGTGTCTCCAACGTGTTTGTTGATGTCAAGAAGTTCCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ......................................AGAAGTTCCAGC
EX774965       <-- ..................................................
FD555272       <-- ..................................................
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> GGTTGGTGAGCGTGTATCCAACGTGTTGGTTGATGTCAAGAAGTTCCAGC
EX898267       --> GGTTGGTGAGCGTGTCTCCAACGTGTTTGTTGATGTCAAGAAGTTCCAGC
FD540573       --> GGTTGGTGAGCGTGTATCCAACGTGTTTGTTGATGTCAAGAAGTTCCAGC
FD559593       --> ......gGAGCGTGTCTCCAACGTGTTTGTTGATGTCAAGAAGTTCCAGC

               798    -    848
UN14630        --> AAAGATACGCTGAATCTGTGAGCAGAACCACAAGAGAGAGCTCACATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AAAGATACGCTGAATCTGTGAGCAGAACCACAAGAGAGAGCTCACATGAG
EX774965       <-- ..........................................CACATGAG
FD555272       <-- ..................................................
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> AAAGATACGCTGAATCCATGAGCAGAACCACAAGAGAGAGCTCACAGGAG
EX898267       --> AAAGATACGCTGAATCTGTGAGCAGAACCACAAGAGAGAGCTCACATGAG
FD540573       --> AAAGATACGCTGAATCCATGAGCAGAACCACAAGAGAGAGCTCACAGGAG
FD559593       --> AAAGATACGCTGAATCGGTGAGCAGAACCACAAGAGATAGCTCACATGAG

               848    -    898
UN14630        --> AGTGACTTGCAGAGAGAAGTGAGAATGAGTGCAGTGGAAGCAATCAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AGTGACTTGCAGAGAGAAGTGAGAATGAGTGCAGTGGAAGCAATCAGGTC  Raphanus raphanistrum subsp. landra
EX774965       <-- AGTGACTTGCAGAGAGAAGTGAGAATGAGTGCAGTGGAAGCAATCAGGTC  Raphanus raphanistrum subsp. landra
FD555272       <-- ........GCAGAGAGAAGTGAGAATGAGTGCAGTGGAAGCAATCAGGTC  Raphanus raphanistrum subsp. landra
EX770830       --> ..................................................  Raphanus raphanistrum subsp. landra
FD556094       --> ..................................................  Raphanus raphanistrum subsp. landra
EY913987       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
HS106819       --> ..................................................  Raphanus sativus var. niger
FD543909       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543167       --> AGTGACTTGCAGAGAGAAGTAAGAATGAGTGCAGTGGAAGCAATCAG-TC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898267       --> AGTGACTTGCAGAGAGAAGTAAGAATGAGTGCAGTGGAAGCAA.......  Raphanus sativus cv Early Scarlet Globe
FD540573       --> AGTGACTTGCAGAGAGAAGTAAGAATGAGTGCAGTGGAAGCAATCAGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD559593       --> AGTGACTTGCAGAGAGAAGTGAGAATGAGTGCAGTGGAAGCAATCAGGTC  Raphanus raphanistrum subsp. landra

               898    -    948
UN14630        --> AATCTCCAATTGGCTATACTGGAGATCATCACCC-TACTCAAAACCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AATCTCCAATTGGCTATACTGGAGATCATCACCC-TACTCAAAACCATTG
EX774965       <-- AATCTCCAATTGGCTATACTGGAGATCATCACCCCTACTCAAAACCATTG
FD555272       <-- AATCTCCAATTGGCTATACTGGAGATCATCACCC-TACTCAAAACCATTG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> TATCTCCAATTGGCTATAC...............................
EX898267       --> ..................................................
FD540573       --> TATCTCCAATTGGCTATGCTGGAGATCATCACCC-TACTCAAAACCATTG
FD559593       --> AATCTCCAATTGGCTATACTGGAGATCATCACCC-TACTCAAAACCATTG

               948    -    998
UN14630        --> AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCAGC
EX774965       <-- AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCAGC
FD555272       <-- AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCAGC
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCACC
FD559593       --> AGTCCTGATTCAAACATGAGTCTCACTTTCACCAAACGGAAGAAAGCAGC

               998    -   1048
UN14630        --> AGAACCAAACATCAGAAAGCTTCAAGATGCTGTTGCAGCAATGAAACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AGAACCAAACATCAGAAAGCTTCAAGATGCTGTTGCAGCAATGAAACAAG
EX774965       <-- AGAACCAAACATCAGAAAGCTTCAAGATGCTGTTGCAGCAATGAAACAAG
FD555272       <-- AGAACCAAACATCAGAAAGCTTCAAGATGCTGTTGCAGCAATGAAACAAG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> AGAACCAAACATC.....................................
FD559593       --> AGAACCAAACATCAGAAAGCTTCAAGATGCTGTTGCAGCAATGAAACAAG

               1048   -   1098
UN14630        --> CAGAACAGAGCGGTGAAACCAAAGAAAGACTAGCTTCCATGGTTGGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- CAGAACAGAGCGGTGAAACCAAAGAAAGACTAGCTTCCATGGTTGGAGAA
EX774965       <-- CAGAACAGAGCGGTGAAACCAAAGAAAGACTAGCTTCCATGGTTGGAGAA
FD555272       <-- CAGAACAGAGCGGTGAAACCAAAGAAAGACTAGCTTCCATGGTTGGAGAA
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> CAGAACAGAGCGGTGAAACCAAAGAAAGACTAGCTTCCATGGTTGGAGAA

               1098   -   1148
UN14630        --> GATTACTGGATTCCATCAAACCTAGCTCTTCCCTCATCCGGAAACACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- GATTACTGGATTCCATCAAACCTAGCTCTTCCCTCATCCGGAAACACCAG
EX774965       <-- GATTACTGGATTCCATCAAACCTAGCTCTTCCCTCATCCGGAAACACCAG
FD555272       <-- GATTACTGGATTCCATCAAACCTAGCTCTTCCCTCATCCGGAAACACCAG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> GATTACTGGATTCCATCAAACCTAGCTCTTCCCTCATCCGGAAACACCAG

               1148   -   1198
UN14630        --> TACCAAGACTACTTCGGTGTCTCATAAAAACACTCCATCTGAAGAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- TACCAAGACTACTTCGGTGTTTCATAAAAACACTCCATTTGAAGAGAAGG
EX774965       <-- TACCAAGACTACTTCGGTGTCTCATAAAAACACTCCATCTGAAGAGAAGG
FD555272       <-- TACCAAGACTACTTCGGTGTCTCATAAAAACACTCCATCTGAAGAGAAGG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> TACCAAGACTACTTCGGTGTCTCATAAAAACACTCCATCTGAAGAGAAGG

               1198   -   1248
UN14630        --> CTACTAGTAGTAGTAGACGTGAATATAAAAGGCAGAACTTCAAGATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- CTACTAGTAGTAGTAGACGAGAATATAAAAGGCAGAACTTCAAGATACAT
EX774965       <-- CTACTAGTAGTAGTAGACGAGAATATAAAAGGCAGAACTTCAAGATACAG
FD555272       <-- CTACTAGTAGTAGTAGACGTGAATATAAAAGGCAGAACTTCAAGATACAG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> CTACTAGTAGTAGTAGACGTGAATATAAAAGGCAGAACTTCAAGATACAG

               1248   -   1298
UN14630        --> AAGTTTCCAATAGGAACAGCCACAGTAGCAGTGTTCCTGGTTCAGTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AAGTTTCCAATAGGAACAGCCACAGTAGCAGTGTTCCTGGTTCAGTTCCA
EX774965       <-- AAGTTTCCAATAGGAACAGCCACAGTAGCAGTGTTCCTGGTTCAGTTCCA
FD555272       <-- AAGTTTCCAATAGGAACAGCCACAGTAGCAGTGTTCCTGGTTCAGTTCCA
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> AAGTTTCCAATAGGAACAGCCACAGTAGCAGTGTTCCTGGTTCAGTTCCA

               1298   -   1348
UN14630        --> AGCCAGCTACAGAGCCCCAGAGCTCAGTGACCATATAGGTGGCTCGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- AGCCAGCTACAGAGCCCCAGAGCTCAGTGACCATATAGGTGGCTCGTTGG
EX774965       <-- AGCCAGCTACAGAGCCCCAGAGCTCAGTGACCATATAGGTGGCTCGTTGG
FD555272       <-- AGCCAGCTACAGAGCCCCAGAGCTCAGTGACCATATAGGTGGCTCGTTGG
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> AGCCAGCTACAGAGCCCCAGAGCTCAGTGACCATATAGGTGGCTCGTTGG

               1348   -   1398
UN14630        --> CTCTGTCTATAGTTAACAGCCCATGGCAGCAGATTTTGTTAGCCGGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- CTCTGTCTATAGTTAACAGTCCATGGCAGCAGATTTTGTTAGCCGGGGTT
EX774965       <-- CTCTGTCTATAGTTAACAGCCCATGGCAGCAGATTTTGGTAGCCGGGGTT
FD555272       <-- CTCTGTCTATAGTTAACAGCCCATGGCAGCAGATTTTGTTAGCCGGGGTT
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> CTCTGTCTATAGTTAACAGCCCATGGCAGCAGATTTTGTTAGCCGGGGTT

               1398   -   1448
UN14630        --> ACCTGGTACTTCATCGGTGCAATGTTACTCCAGCTTGTGGAAGCTATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ACCTGGTACTTCATCGGTGCAATGTTACTCCAGCTTGTGGAAGCTATCCA
EX774965       <-- ACCTGGTACTTCATCGGTGCAATGTTACTCCAGCTTGTGGAAGCTATCCA
FD555272       <-- ACCTGGTACTTCATCGGTGCAATGTTACTCCAGCTTGTGGAAGCTATCCA
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ACCTGGTACTTCATCGGTGCAATGTTACTCCAGCTTGTGGAAGCTATCCA

               1448   -   1498
UN14630        --> ATCCAAGCAAGAAGAAGATAAAGAAGCATAGACCTAATAGATATACAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ATCCAAGCAAGAAGAAGATAAAGAAGCATAGACCTAATAGATATACGGTA
EX774965       <-- ATCCAAGCAAGAAGAAGATAAAGAAGCATAGACCTAATAGATATACAGTA
FD555272       <-- ATCCAAGCAAGAAGAAGATAAAGAAGCATAGACCTAATAGATATACAGTA
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ATCCAAGCAAGAAGA...................................

               1498   -   1548
UN14630        --> TATATGTATAGCGAAGATATTACTACAGTATATATACAACAAGAAAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- TATATGTATAGCGAAGATATTACTACAGTATATATACAACAAGAAAGTGC
EX774965       <-- TATATGTATAGCGAAGATATTACTACAGTATATATACAACAAGAAAGTGC
FD555272       <-- TATATGTATAGCGAAGATATTACTACAGTATATATACAACAAGAAAGTGC
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               1548   -   1598
UN14630        --> TTATTGAAAATTTATTCCTGACAACAATTTTAAAATTGTATTTAAGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- TTATTG............................................
EX774965       <-- TTATTGAAAATTTATTCCTGACAACAATTTTAAAATTGTATTTAAGAGTT
FD555272       <-- TTATTGAAAATTTATTCCTGACAACAATTTTAAAATTGTATTTAAGAGTT
EX770830       --> ..................................................
FD556094       --> ..................................................
EY913987       --> ..................................................
HS106819       --> ..................................................
FD543909       --> ..................................................
FD543167       --> ..................................................
EX898267       --> ..................................................
FD540573       --> ..................................................
FD559593       --> ..................................................

               1598   -   1648
UN14630        --> CATAAGCATTATATATTAGTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
FD552455       <-- ........................
EX774965       <-- CATAAGCATTATATATTAGTTGCC
FD555272       <-- CATAAGCATTATATATTAGTTGCC
EX770830       --> ........................
FD556094       --> ........................
EY913987       --> ........................
HS106819       --> ........................
FD543909       --> ........................
FD543167       --> ........................
EX898267       --> ........................
FD540573       --> ........................
FD559593       --> ........................