Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN14651

               1      -     51
UN14651        --> AAGTGCACTGAGCGAGA-TGATGGGACTGTTGGGTTTGCTCAGGAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- AAGTGCACTGAGCAAGA-TGATGG-ACTGTTGGGTT-GCTCAGGAGT-G-
EV573930       <-- .....ctCTGAGCGAGAATGATGGGACTGTTGGGTTTGCTCAGGAGTTGT
EV574501       <-- ..............gaA-TGATGGGACTGTTGGGTTTGCTCAGGAGTTGT
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> ..................................................

               51     -    101
UN14651        --> TGAGTGATTTGTCTGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- TGAATGATTTGTCTGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EV573930       <-- TGAGTGATTTGTCTGGTGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EV574501       <-- TGAGTGATTTGTCTGGTGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EW726955       <-- ............gTGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EW727246       <-- ............gTGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ............gTGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EW725537       --> ............ggGGAGAAGCTAGGCGACAGGGGATCAAACCGTTTTCT
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> ..................................................

               101    -    151
UN14651        --> GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCCAAAA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- GATGTGATCCAGAGTT-GTGCAGGATGAAGAATGTTAAAGACGCCAAAA-
EV573930       <-- GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCTAAAG-
EV574501       <-- GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCTAAAG-
EW726955       <-- GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCCAAAAA
EW727246       <-- GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCCAAAA-
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCCAAAA-
EW725537       --> GATGTGATCCAGAGTTTGTGCAGGATGAAGAATGTTAAAGACGCCAAAA-
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> ..................................................

               151    -    201
UN14651        --> GTTTGGTTCTGGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- GTTTGGT--TGGATATGATCTCTAA-GGACCTGCTCCTGGGAACGCGGTT
EV573930       <-- GTTTGGTTCTTGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
EV574501       <-- GTTTGGTTCTTGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
EW726955       <-- GTTTGGTTCTGGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
EW727246       <-- GTTTGGTTCTGGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> GTTTGGTTCTGGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
EW725537       --> GTTTGGTTCTGGATATGATCTCTAAAGGACCTGCTCCTGGGAACGCGGTT
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> ..................................................

               201    -    251
UN14651        --> TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
EV573930       <-- TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
EV574501       <-- TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
EW726955       <-- TTTAATCTGATCGTCCATGCCGCTTCGAGAAagtg...............
EW727246       <-- TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
FD553564       <-- .......................................CTCGACGAAGC
EW730821       <-- ..................................................
EW722125       --> TTTAATCTGATCGTCCATGCCGCTTCGAGAAGTGGAGATCTCGACGAAGC
EW725537       --> TTTAATCTGATCGTCCATGCCGC...........................
EW722126       --> ........................................TCGACGAAGC
FD967060       --> ..................................................
EV530321       --> ..................................................

               251    -    301
UN14651        --> CAAAGAGGTCTTGAAGTTGATGGAGGGAAGAGGTCTGAAACCGGACGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- CAAAGAGGTCTTGAAGTTGATGGAGGGAAGAGGTCTGAAACCGGACGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- CAAAGAGGTTTTGAAGTTGATGGAGAGCAGAGGTTTGAAACCGGACGTGT  Raphanus raphanistrum subsp. landra
EV574501       <-- CAAAGAGGTTTTGAAGTTGATGGAGAGCAGAGGTTTGAAACCGGACGTGT  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- CAAAGAGGTCTTGAAGTTGATGGAGGGAAGAGGTCTGAAACCGGACGTGT  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- CAAAGAGGTTTTGAAGTTGATGGAGAGCAGAGGTTTGAAACCGGACGTGT  Raphanus raphanistrum subsp. landra
EW730821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722125       --> CAAAGAGGTCTTGAAGTTGATGGAGGGAAGAGGTCTGAAACCGGACGTGT  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> CAAAGAGGTCTTGAAGTTGATGGAGGGAAGAGGTCTGAAACCGGACGTGT  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN14651        --> ACACTTACACAGTCATCATCAGCGGGTATGCTAAAGGAGGGATGATGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ACACTTACACAGTCATCATCAGCGGGTATGCTAAAGGAGGGATGATGAAC  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- ACACTTACACAGTCATCATCAGCGGTTATGCTAAAGGAGGGATGATGAAC  Raphanus raphanistrum subsp. landra
EV574501       <-- ACACTTACACAGTCATCATCAGCGGTTATGCTAAAGGAGGGATGATGAAC  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- ACACTTACACAGTCATCATCAGCGGGTATGCTAAAGGAGGGATGATGAAC  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- ACACTTACACAGTCATCATCAGCGGTTATGCTAAAGGAGGGATGATGAAC  Raphanus raphanistrum subsp. landra
EW730821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722125       --> ACACTTACACAGTCATCATCAGCGGGTATGCTAAAGGAGGGATGATGAAC  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> ACACTTACACAGTCATCATCAGCGGGTATGCTAAAGGAGGGATGATGAAC  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN14651        --> GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
EV573930       <-- GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
EV574501       <-- GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
EW726955       <-- ..................................................
EW727246       <-- GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
FD553564       <-- GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
EW730821       <-- ..................................................
EW722125       --> GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
EW725537       --> ..................................................
EW722126       --> GAAGCTCAGGAGATACTAGCGGAAGCGAAAAAGAAACATGAGAGGCTTAG
FD967060       --> ..................................................
EV530321       --> ..................................................

               401    -    451
UN14651        --> TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
EV573930       <-- TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
EV574501       <-- TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
EW726955       <-- ..................................................
EW727246       <-- TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
FD553564       <-- TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
EW730821       <-- ..................................................
EW722125       --> TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
EW725537       --> ..................................................
EW722126       --> TCCCGTGACGTATCACTCGCTCATCCGAGGCTACTGCAAGATTGAAGAGT
FD967060       --> ..................................................
EV530321       --> ..................................................

               451    -    501
UN14651        --> ATGACAAAGCTCTTAAGCTTCTGAACGAGATGGAGAGTTTTGGAGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ATGACAAAGCTCTTAAGCTTCTGAACGAGATGGAGAGTTTTGGAGTGAAG  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- ATGACGAAGCTCTTAAGCTTTTGAACGAGATGGAGAGTTTCGGTGTGAAG  Raphanus raphanistrum subsp. landra
EV574501       <-- ATGACGAAGCTCTTAAGCTTTTGAACGAGATGGAGAGTTTCGGTGTGAAG  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- ATGACAAAGCTCTTAAGCTTCTGAACGAGATGGAGAGTTTTGGAGTGAAG  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- ATGACGAAGCTCTTAAGCTTTTGAACGAGATGGAGAGTTTCGGTGTGAAG  Raphanus raphanistrum subsp. landra
EW730821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722125       --> ATGACAAAGCTCTTAAGCTTCTGAACGAGATGGAGAGTTTTGGAGTGAAG  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> ATGACAAAGCTCTTAAGCTTCTGAACGAGATGGAGAGTTTTGGAGTGAAG  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN14651        --> CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTCAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTCAAAGC  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTAAAAGC  Raphanus raphanistrum subsp. landra
EV574501       <-- CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTAAAAGC  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTCAAAGC  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTAAAAGC  Raphanus raphanistrum subsp. landra
EW730821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722125       --> CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTCAAAGC  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> CCTAGTGAGGATGAGTATAGTAAGCTGATACAGTCGTTCTGCCTCAAAGC  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN14651        --> CTTGGATTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- CTTGGATTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- CTTGGACTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus raphanistrum subsp. landra
EV574501       <-- CTTGGACTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- CTTGGATTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- CTTGGACTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus raphanistrum subsp. landra
EW730821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722125       --> CTTGGATTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> CTTGGATTGGGAGAAAGCAGAGATGCTGTTTGAGGAGATGAAGCAGAAGG  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN14651        --> GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
EV573930       <-- GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
EV574501       <-- GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
EW726955       <-- ..................................................
EW727246       <-- GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
FD553564       <-- GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAATAA
EW730821       <-- ..................................................
EW722125       --> -CTTGCACCTCAATGCTATTACTCAGGGctga..................
EW725537       --> ..................................................
EW722126       --> GCTTGCACCTCAATGCTATTACTCAGGGGCTGATAAGAGCAGTTAAAGAA
FD967060       --> ..................................................
EV530321       --> ..................................................

               651    -    701
UN14651        --> ATGCAAACTGAAGGCAAGGCAACCGAAGATGTTAATCTACTTGCTACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ATGCAAACTGAAGGCAAGGCAACCGAAGATGTTAATCTACTTGCTACATC
EV573930       <-- ATGCAAACTGAAGGCAAGGCGACCGAAGATGTTAATCTACTTGCTACATC
EV574501       <-- ATGCAAACTGAAGGCAAGGCGACCGAAGATGTTAATCTACTTGCTACATC
EW726955       <-- ..................................................
EW727246       <-- ATGCAAACTGAAGGCAAGGCAACCGAAGATGTTAATCTACTTGCTACATC
FD553564       <-- ATGCAAACTGAAGGCAAGGCAACCGAAGATGTTAATCTACTTGCTACATC
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ATGCAAACTGAAGGCAAGGCAACCGAAGATGTTAATCTACTTGCTACATC
FD967060       --> ..................................................
EV530321       --> ..................................................

               701    -    751
UN14651        --> GTAGAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- GTAGAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
EV573930       <-- GTAGAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
EV574501       <-- GTAGAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
EW726955       <-- ..................................................
EW727246       <-- GTAGAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
FD553564       <-- GTAAAACTTGGATTCAAGATTTTT-CCATTTGTTCCTAATCAAATCTGGA
EW730821       <-- .........................CCATTTGTTCCTAATCAAATCTGGA
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> GTAGAACTTGGATTCAAGATTTTTTCCATTTGTTCCTAATCAAATCTGGA
FD967060       --> ..................................................
EV530321       --> ..................................................

               751    -    801
UN14651        --> ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
EV573930       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
EV574501       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
EW726955       <-- ..................................................
EW727246       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
FD553564       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGGCAATGCCT
EW730821       <-- ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ATAGTTTTTTGAAGATGTTTTCTCTTGGTTTGAAACTCCAGACAATGCCT
FD967060       --> ..................................................
EV530321       --> ..................................................

               801    -    851
UN14651        --> TGTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- TGTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCAcc  Raphanus sativus cv Rat-Tail Radish #3870
EV573930       <-- TGTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCAcc  Raphanus raphanistrum subsp. landra
EV574501       <-- TGTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCAcc  Raphanus raphanistrum subsp. landra
EW726955       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW727246       <-- TTTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCATC  Raphanus sativus cv Early Scarlet Globe
FD553564       <-- TGTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCATC  Raphanus raphanistrum subsp. landra
EW730821       <-- TTTTTGTTTTCCAATAAGCTTTTATGGTGTTCAATAGATGATTTTTCATC  Raphanus sativus cv Early Scarlet Globe
EW722125       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW725537       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722126       --> TTTTTGTTCTCCAATAAGCTTCTATGGTGTTCAATAGATGATTTTTCATC  Raphanus sativus cv Early Scarlet Globe
FD967060       --> ..........................GTGTTCAATAGATGATTTTTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV530321       --> ..............................................cgTC  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN14651        --> ATAAAATAATTTCAAATTCATAAACTTATTAATGATTCAATGCTAATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ATAAAATAATTTCAAATT................................
FD553564       <-- ATAAAATAATTTCAAATTCAc.............................
EW730821       <-- ATAAAATAATTTCAAATT................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ATAAA-TAATTTCAAATTaaa.............................
FD967060       --> ATAAAGTAGTTTCAAATTCATAAACTTATTAATGATTCAATGCTAATAGC
EV530321       --> ATAAAATAATTTCAAATTCATAAACTTATTAATGATTCAATGCTAAAAGC

               901    -    951
UN14651        --> AGATTTTTTATAAATAGATAGAAAAATCAGGAAATTCTGACGACCACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> AGATTTTTTATAAATAGAAAGAAAAATCAGGAAATTCTGACGACCACTTT
EV530321       --> AGATTTTTTATAAAAAGATAGAAAAATCAGGAAATTCTGACGACCACTTT

               951    -   1001
UN14651        --> GTTCTTTTTGCCTGAAGAGAGAACAAGACCTTTCCCTTCAACAATATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> GTTCTTTTTGCCTGAAGAGAGAACAAGACCTTTCCCTTCAACAATATCAT
EV530321       --> GTTCTTTTTGCCTGAAGAGAGAACAAGACCTTTCCCTTCAACAATATCAT

               1001   -   1051
UN14651        --> CTTCTTCAACTCTCTTGTTCTCATCTTCAACTCTCTCATTGTTCATATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> CTTCTTCAACTCTCTTATTCTCATCATCAACTCTCTCATTGTTCATATAA
EV530321       --> CTTCTTCAACTCTCTTGTTCTCATCTTCAACTCTCTCATTGTTCATATAA

               1051   -   1101
UN14651        --> ACCCCACCTTGCTTCAACGTTCTCCTTGCTGCAGACTTGCTCTCAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ACCCCACCTTGCTTCAACGTTCTCCTTGCTGCAGACTTGCTCTCAAACAA
EV530321       --> ACCCCACCTTGCTTAAACGTTCTCCTTGCTGCAGACTTGCTCTCAAACAA

               1101   -   1151
UN14651        --> CCCTGCAGAAACCGACACATCAACAATGGAAACACCTGAGACTCTATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> CCCTGCAGAAACCAACAAATCAACAATGGAAACACCTGAGACTCTATCAA
EV530321       --> CCCTGCAGAAACCGACACATCAACAATGGAAACACCCGAGACTCTATCAA

               1151   -   1201
UN14651        --> CAGGCAGTGAGCAAGTTGGTATATCCTCTGCAATTCTCTCAATCAAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> CAGGCAGTGAGCAAGTTGGTATATCCTCTGCAATTCTCTCAATCAAGTTC
EV530321       --> CAGGCAGTGAGCAAGTTGGTATATCCTCTGCAATTCTCTCAACCAAGTTC

               1201   -   1251
UN14651        --> CAGTCAAGCTTTGTCTCAGCTCCTGGTCTTAAAGCCTCTGTTGCCTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> CAGTCAAGCTTTGTCTCAGCTCCTGGTCTTAAAGCCTCTGTTGCCTTGAT
EV530321       --> CAATCAAGCTTTGTCTCAGCTCCTGGTCTTAAAGCCTCTGTTGCCTTGAT

               1251   -   1301
UN14651        --> TGCTTCCTTCAAACCATCTTCACCATGTACAAATCGTGTTACTTCTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> TGCTTCCTTCAAACCATCTTCACCATGTACAAATCGTGTTACTTCTTCAG
EV530321       --> TGCTTCCTTCAAACCATCTTCACCATGTACAAACCGTGTTACTTCTTCAG

               1301   -   1351
UN14651        --> CCAGTTTCATTTGCGCGGTGTTAGGGACATAACCAGGCTTCCTCATCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> CCAGTTTCATTTGCGCGGTG..............................
EV530321       --> CCAGTTTCATTTGCGCGGTGTTAGGGACATAACCAGGCTTCCTCATCTCA

               1351   -   1401
UN14651        --> TCTTCCAAGTTCCTTATCTCATCCAAACTCAGGAACGTCAACGTCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> TCTTCCAAGTTCCTTATCTCATCCAAACTCAGGAACGTCAACGTCTTCAA

               1401   -   1451
UN14651        --> GAAGCGTATCACATCAACGTCTGGAACTGAGAAGAAGTACTGATAGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> GAAGCGTATCACATCAACGTCTGGAACTGAGAAGAAGTACTGATAGAACT

               1451   -   1501
UN14651        --> TATAAGGCGATAGCATGGAAGGAGACAGCCAGATGGCTCCATCTTCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> TATAAGGCGATAGCATGGAAGGAGACAGCCAGATGGCTCCATCTTCAGAC

               1501   -   1551
UN14651        --> TTCCCGAACTTAGTCCCATCGTTTTTCAGCAGGAGAGGAAACGTTAGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> TTCCCGAACTTAGTCCCATCGTTTTTCAGCAGGAGAGGAAACGTTAGCCC

               1551   -   1601
UN14651        --> GTAAGAAGCTTCTTCGGTCTGGAGAATCTTACGTATCAGATCAGTTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> GTAAGAAGCTTCTTCGGTCTGGAGAATCTTACGTATCAGATCAGTTCCAG

               1601   -   1651
UN14651        --> CTGTTATGTTACCCCACTGATCACTCCCACCTATCTGAACATTAACCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- ..................................................
EV573930       <-- ..................................................
EV574501       <-- ..................................................
EW726955       <-- ..................................................
EW727246       <-- ..................................................
FD553564       <-- ..................................................
EW730821       <-- ..................................................
EW722125       --> ..................................................
EW725537       --> ..................................................
EW722126       --> ..................................................
FD967060       --> ..................................................
EV530321       --> CTGTTATGTTACCCCACTGATCACTCCCACCTATCTGAACATTAACCCCT

               1651   -   1701
UN14651        --> TCCTTGTCGAACAAGTGAACGAAGTCATAGCCTTGCAATAACTGATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW738253       <-- .................................................
EV573930       <-- .................................................
EV574501       <-- .................................................
EW726955       <-- .................................................
EW727246       <-- .................................................
FD553564       <-- .................................................
EW730821       <-- .................................................
EW722125       --> .................................................
EW725537       --> .................................................
EW722126       --> .................................................
FD967060       --> .................................................
EV530321       --> TCCTTGTCGAACAAGTGAACGAAGTCATAGCCTTGCAATAACTGATAGC