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Alignment for radish unigene UN14721

               1      -     51
UN14721        --> AATTGAAAAAGAAATGGGAAGCGAAGGGACGACGATTGTGAGGAAGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> AATTGAAAAAGAAATGGGAAGCGAAGGGACGACGATTGTGAGGAAGCCAA
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               51     -    101
UN14721        --> GGTTTCTGTGTCTACATGGTTTCCGTACGAGCGGAGAGATAATGAAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> GGTTTCTGTGTCTACATGGTTTCCGTACGAGCGGAGAGATAATGAAGATA
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               101    -    151
UN14721        --> CAGCTTCACAAGTGGCCTAAATCTGTTATCGACCGACTCGATCTCGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> CAGCTTCACAAGTGGCCTAAATCTGTTATCGACCGACTCGATCTCGTGTT
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               151    -    201
UN14721        --> TCTCGCCGCGCCTTTTCCTTGTCAAGGCAAATCTGATGTCGAAGGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> TCTCGCCGCGCCTTTTCCTTGTCAAGGCAAATCTGATGTCGAAGGCATCT
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               201    -    251
UN14721        --> TCGATCCTCCTTATTACGAGTGGTTCCAGTTTAACAAGGAATTTAATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> TCGATCCTCCTTATTACGAGTGGTTCCAGTTTAACAAGGAATTTAATGAG
EV569967       --> ........CCTTATTACGAGTGGTTCCAGTTTAACAAGGAATTTAATGAG
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               251    -    301
UN14721        --> TATACGAATTTCGAGAAGTGTTTGGAATATATAGAGGATAGTATGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> TATACGAATTTCGAGAAATGTTTGGAATATATAGAGGATAGTATGATTAA
EV569967       --> TATACGAATTTCGAGAAGTGTTTGGAATATATAGAGGATAGTATGATTAA
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               301    -    351
UN14721        --> GCTTGGCCCCTTTGATGGTCTCATTGGCTTTTCTCAGGGTGCAATTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> GCTTGGCCCCTTTGATGGTCTCATTGGCTTTTCTCAGGGTGCAATTTTGT
EV569967       --> GCTTGGCCCCTTTGATGGTCTCATTGGCTTTTCTCAGGGTGCAATTTTGT
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               351    -    401
UN14721        --> CTGGAGGATTACCAGGACTGCATGCTAGGGGAATTTGCACTCCAGAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> CTGGAGGATTACCAGGACTGCATGCTAGGGGAATT-GCACTCCAGAAAGT
EV569967       --> CTGGAGGATTACCAGGACTGCAAGCTAGGGGAATTTGCACTCCAGAAAGT
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               401    -    451
UN14721        --> ACCAAAGATCAAGTTCATCATCATTATTGGAGGAGCTATGTTCAAATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ACCAAAGATCAAGTTCATCATCATTATTGGAGGAGCTATGTTCAAATCCA
EV569967       --> ACCAAAGATCAAGTTCATCATCATTATTGGAGGAGCTATGTTCAAATCCA
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               451    -    501
UN14721        --> CCAAGGTCGCCAAGGATGCGTATTCATCTACCATGGACACTCCCTCCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> CCAAGGTCGCCAAGGAAGCGTATTCATCTACCATGGACACTCCCTCCCTC
EV569967       --> CCAAGGTCGCCAAGGATGCGTATTCATCTACCATGGACACTCCCTCCCTC
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               501    -    551
UN14721        --> CTCTTTCTAGGAGAGACTGATTTCTTGAAACCTTACGGAACTGAACTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> CT-TTTCTAGGAGAGACTGATTTCTTGAAACCTTACGGAACTGAACTGAT
EV569967       --> CACTTTCTAGGAGAGACTGATTTCTTGAAACCTTACGGAACTGAACTGAT
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               551    -    601
UN14721        --> AGACTTGTTCAAGAATCCGGTGGTAGTTAATCATCCTAAAGGCCACACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> AGACTTGTTCAAGAATCCGGTGGTAGTTAATCATCCTAAAGGCCACACAG
EV569967       --> AGACTTGTTCAAGAATCCGGTGGTAGTTAATCATCCTAAAGGCCACACAG
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               601    -    651
UN14721        --> TCCCAAGACTTGATGAGAAGAGCTTGGGAGAAAGTTGCTGCATTCATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> TCCCAAGACTTGATGAGAAGAGCTTGG-AGAAAGTTGCTGCATTCATCGA
EV569967       --> TCCCAAGACTTGATGAGAAGAGCTTGGGAGAAAGTTGCTGCATTCATCGA
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               651    -    701
UN14721        --> CACCATTGAGCATCTGCTAATGGAGGAACTCAAGATTGGTGAAGAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> CACCATTGAGCATCTGCTAATGGAGGAACTCAAGATTGGTGAA.......
EV569967       --> CACCATTGAGCATCTGCTAATGGAGGAACTCAAGATTGGTGAAGAAGCCA
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               701    -    751
UN14721        --> CTACTAATCAGCCAGAATAGAACAAACACCTTATAGTGGTAATGTATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> CTACTAATCAGCCAGAATAGAACAAACACCTTATAGTGGTAATGTATAAG
EY920237       --> ..................aaAACAAACACCTTATAGTGGTAATGTATAAG
FD555723       --> ..................................................
EY904034       --> ..................................................

               751    -    801
UN14721        --> TAAGACAAATAATTGTGAAATGGCTGTAAAATCATATTCTTCATTACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- .......................CTGTAAA-TCATATTCTTCAT-ACACA
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> TAAGACAAATAATTGTGAAATGGCTGTAAAATCATATTCTTCATTACACA
EY920237       --> TAAAACAAATAATTGTGAAATGGCTGTAAAATCATATTCTTCATTACACA
FD555723       --> ..............GTGAAATGGCTGTAAAATCATATTCTTCATTACACA
EY904034       --> ......................GCTGTAAAATCAAATTCTTCATTACACA

               801    -    851
UN14721        --> CTCTTTTACCTTT-ACTACACAAGACAAATAATAAACGTTTCATTCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- CTCTTT-ACCTTT-ACTACACAAGACAAATAATAA-CG-TTCATTCTTTA
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> CTCTTTTACCTTT-ACTACACAAGAC........................
EY920237       --> CTCTTTTACCTTT-ACTACACAAGACAAATAATAAACGTTTCATTCTTTA
FD555723       --> CTCTTTTACCTTT-ACTACACAAGACAAATAATAAACGTTTCATTCTTTA
EY904034       --> CTCTTTTGCCTTTGACTACACAAGACAAATAATAAACGTTTCATTCTTTA

               851    -    901
UN14721        --> ATTATAACAACAACATTTTCTTCCTTGACTCGTCACTCTTTCTTGGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ATTATAACAACAACATTTTCTTCCTTGACTCGTCACTCTTTCTTGGTACA
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ATTAAAACAACAACATTTTCTTCCTTGACTCCCCACTCTTTCTTGGTACA
FD555723       --> ATTATAACAACAACATTTTCTTCCTTGACTCGTCACTCTTTCTTGGTACA
EY904034       --> ATTATCACAACAACATTTTCTTCCTTGACTCGTCACTCTTTCTTGGTACA

               901    -    951
UN14721        --> AACACAACATTCTCTAAGTTTGTCTTCATAAAATTGTTACAAACTTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- AACACAACATTCTCTAAGTTTGTCTTCATAAAATTGTTACAAACTTTGGA
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> AACACAACATTCTCTAAGTTTGTCTTCATAAAATTGTTACAAACTTTGGA
FD555723       --> AACACAACATTCTCTAAGTTTGTCTTCATAAAATTGTTACAAACTTTGGA
EY904034       --> AACACAACATTCTCTAAGTTTGTCTTCATAAAATTGTTACAAACTTTGGA

               951    -   1001
UN14721        --> GCATCCTTCCTTGGGCCATCAAGGGACCGATACATGTACAGTATCTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- GCATCTTTCCTTGGGCCATCAAGGGACCGATACATGTACAGTATCTCCAC
EV549414       <-- .............GGCCATCAAGGGACCGATACATGTACAGTATCTCCAC
EY924620       <-- .................ATCAAGGGACCGATACATGTACAGTATCTCCAC
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> GCATCCTTCCTTGGGCCATCAAGGGACCGATACATGTACAGTATCTCCAC
FD555723       --> GCATCCTTCCTTGGGCCATCAAGGGACCGATACATGTACAGTATCTCCAC
EY904034       --> GCATCCTTCCTTGGGCCATCAAGGGACCGATACATGTACAGTATCTCCAC

               1001   -   1051
UN14721        --> ATAATCTGCATTGTCCTCATCGACATCGACATCATCATCATCTGACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ATAATCTGCATTGTCCTCATCGACATCGACATCATCATCATCTGACCCAA
EV549414       <-- ATAATCTGCATTGTCCTCATCGACATCGACATCATCATCATCTGACCCAA
EY924620       <-- ATAATCTGCATTGTCCTCATCGACATCGACATCATCACCATCTGACCCAA
EY908319       <-- ..................................................
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ATAATCTGCATTGTCCTCATCGACATCGACATCATCACCATCTGACCCAA
FD555723       --> ATAATCTGCATTGTCCTCATCGACATCGACATCATCATCATCTGACCCAA
EY904034       --> ATAATCTGCATTGTCCTCATCGACATCGACATCATCATCATCTGACCCAA

               1051   -   1101
UN14721        --> ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT
EV549414       <-- ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT
EY924620       <-- ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT
EY908319       <-- ...................AGGCAGAGCGCGAGCAATATCACTGCAGCTT
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ATACTTCCACCACCACACTAGGCAGAACGCGAGCAATATCACTGCAGCTT
FD555723       --> ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT
EY904034       --> ATACTTCCACCACCACACTAGGCAGAGCGCGAGCAATATCACTGCAGCTT

               1101   -   1151
UN14721        --> CCCCGGGACAACCTACATGACGACATCCAAACAAACCTCATATCATTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- CCCCGGGACAACCTACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. landra
EV549414       <-- CCCCGGGACAACATACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- CCCCGGGACAACCTACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. landra
EY908319       <-- CCCCGGGACAACATACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> CCCCGGGACAACCTACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. landra
FD555723       --> CCCCGGGACAACCTACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. landra
EY904034       --> CCCCGGGACAACATACATGACGACATCCAAACAAACCTCATATCATTATA  Raphanus raphanistrum subsp. raphanistrum (MS)

               1151   -   1201
UN14721        --> CCTATGCATACCAGAGCGCAGTCCAGCATCCCCAAAAGGACTGTCCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- CCTATGCATACCAGAGCGCAGTCCAGCATCCCCAAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. landra
EV549414       <-- CCTATGCATACCAGAGCGCAGTCCAGCATCCCCGAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- CCTATGCATACCAGAGCGCAGTCCAGCATCCCCAAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. landra
EY908319       <-- CCTATGCATACCAGAGCGCAGTCCAGCATCCCCGAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> CCTATGCATACCAGAACGCAGTCCAGCATCCCCAAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. landra
FD555723       --> CCTATGCATACCAGAGCGCAGTCCAGCATCCCCAAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. landra
EY904034       --> CCTATGCATACCAGAGCGCAGTCCAGCATCCCCGAAAGGACTGTCCCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               1201   -   1251
UN14721        --> TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC
EV549414       <-- TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC
EY924620       <-- TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGGGTATATATCTCAGACCC
EY908319       <-- TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> TTTCAAGCTT........................................
FD555723       --> TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC
EY904034       --> TTTCAAGCTTCTCTAGCTTAGGACACCCCTCGAGTATATATCTCAGACCC

               1251   -   1301
UN14721        --> ATGTCACTGTCCCCTGCAAAAGCTACAGATAGACGTACGGATCAACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ATGTCACTGTCCCCTGCAAAAGCTACAGATA-ACGTACGGATCAACTTCC  Raphanus raphanistrum subsp. landra
EV549414       <-- ATGTCACTGTCCCCTGCAAAAGCTACAGACAGA-GTACGGATCAACTTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- ATGTCACTGTCCCCTGCAAAAGCTACAGATA-ACGTACGGATCAACTTCC  Raphanus raphanistrum subsp. landra
EY908319       <-- ATGTCACTGTCCCCTGCAAAAGCTACAGACAGA-GTACGGATCAACTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555723       --> ATGTCACTGTCCCCTGCAAAAGCTACAGATA-ACGTACGGATCAACTTCC  Raphanus raphanistrum subsp. landra
EY904034       --> ATGTCACTGTCCCCTGCAAAAGCTACAGACAGA-GTACGGATCAACTTCC  Raphanus raphanistrum subsp. raphanistrum (MS)

               1301   -   1351
UN14721        --> CATACTCTCCTATAAGGCTAAAAGCTTTGTCTGTTAGTAACCCAGATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- CATACTCTCCTATAAGGCTAAAAGCTTTGTCTGTTAGTAACCCAGATACT
EV549414       <-- CATACTCTCCTATAAGGCTAAAAGCTTGGTCTGCTAGTAATCCAGATACT
EY924620       <-- CATACTCTCCTATAAGGCTAAAAGCTTTGTCTGTTAGTAACCCAGATACT
EY908319       <-- CATACTCTCCTATAAGGCTAAAAGCTTAGTCTGTTAGTAACCCAGACACT
FD978426       <-- ..................................................
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> CATACTCTCCTATAAGGCTAAAAGCTTTGTCTGTTAGTAACCCAGATACT
EY904034       --> CATACTCTCCTATAAGGCTAAAAGCTTAGTCTGTTAGTAACCCAGACACT

               1351   -   1401
UN14721        --> GCAAGTCTGGTTAGCTTCTTGCAGTTTTTGACGATGGCGCCAAATCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- GCAAGTCTGGTTAGCTTCTTGCAGTTTTTGACGATGGCGCCAAATCCATC  Raphanus raphanistrum subsp. landra
EV549414       <-- GCAAGCCTGGTTAGCTTCTTGCAGTTTTTGACAATGGCGCCAAATCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- GCAAGTCTGGTTAGCTTCTTGCAGTTTTTGACGATGGCGCCAAATCCATC  Raphanus raphanistrum subsp. landra
EY908319       <-- GCAAGCCTGGTTAGCTTCTTGCAGTTTTTGACAATGGCGCCAGATCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555723       --> GCAAGTCTGGTTAGCTTCTTGCAGTTTTTGACGATGGCGCCAAATCCATC  Raphanus raphanistrum subsp. landra
EY904034       --> GCAAGCCTGGTTAGCTTCTTGCAGTTTTTGACAATGGCGCCAGATCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)

               1401   -   1451
UN14721        --> GTCCATTGGCTTCCCTGTCACGTGGTCGGGCCTATGGCGACCCATTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- GTCCATTGGCTTCCCTGTCACGTGATCGGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. landra
EV549414       <-- GTCCATTGGCTTCCCTGTCACGTGGTCTGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- GTCCATTGGCTTCCCTGTCACGTGATCGGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. landra
EY908319       <-- GTCCATTGGCTTCCCTGTCACGTGGTCGGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- ................GTCACGTGGTCGGGCCTATGACGACCCATTATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555723       --> GTCCATTGGCTTCCCTGTCACGTGATCGGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. landra
EY904034       --> GTCCATTGGCTTCCCTGTCACGTGGTCGGGCCTATGGCGACCCATTATGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               1451   -   1501
UN14721        --> AAAGCCTAAACACCGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- AAAGCCTAAACACGGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA  Raphanus raphanistrum subsp. landra
EV549414       <-- AAAGCCTGAACACCGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY924620       <-- AAAGCCTAAACACGGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA  Raphanus raphanistrum subsp. landra
EY908319       <-- AGAGCCTAAAGACCGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD978426       <-- AAAGCCTAAAGACCGTAAGCTGGGGACAGTTCTCAGACATGGCTGTCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566850       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569967       --> ..................................................  Raphanus raphanistrum subsp. landra
EY920237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD555723       --> AAAGCCTAAACACGGTAAG...............................  Raphanus raphanistrum subsp. landra
EY904034       --> AGAGCCTAAAGACCGTAAGCTGGGGACAGTTCT.................  Raphanus raphanistrum subsp. raphanistrum (MS)

               1501   -   1551
UN14721        --> GCTACATTAGTCATCCGCTGGCAAAAGTACAGGATAGACTCTAGTTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- GCTACATTAGTCATCCGCTGGCAAAAGTACc...................
EV549414       <-- GCTACATTAGTCATCCGCTGGCAAAAGTACAGGATAGACTCTAGTTTTCT
EY924620       <-- GCTACATTAGTCATCCGCTAGCAAAAGTACAGGATAGACTCTAGTTTTCT
EY908319       <-- GCTACATTAGTCATCCGCTGGCAAAAGTAGAGGATAGACTCTAGTTTTCT
FD978426       <-- GCTACATTAGTCATCCGCTGGCAGAAGTATAGGATAGACTCTAGTTTCTT
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1551   -   1601
UN14721        --> ACAACCTTCTGAAATTGCTTGGAGGCCTAAACCCGAGACGGGACCTTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ACAGCCTTCTGAAATTGCTTGGAGGCCTAAACCCGAGACGGGACCTTCGC
EY924620       <-- ACAACCTTCTGAAATTGCTTGGAGGCCTAAACCCGAGACAGGACCTTCGC
EY908319       <-- ACAACCTTCTGAAATTGCTTGGAGGCCTAATCCCGAc.............
FD978426       <-- ACAACCTTCTGAAATTGCTTGGAGGCCTAAGCCCGAGACGGGACCTTCGC
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1601   -   1651
UN14721        --> TGTCTTCACTAGGATCAAAAGGGAAAATCCTAAGCTCACGTAGCTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- TGTCTTCACTAGGATCAAAAGGGAAAATCCTAAGCTCACGTAGCTCCTTG
EY924620       <-- TGTCTTCACTAGGATCAAAAGGGAAAATCCTAAGCTCACGTAGC......
EY908319       <-- ..................................................
FD978426       <-- TGTCTTCACTAGGATCAAAAGGGAAAATCCTAAGCTCACGTAGCTCCTTG
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1651   -   1701
UN14721        --> CATGTTGCAGCCACTGCCTGTAGTCCTTCATCGCATATAGAGTCAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- CATGTTGCAGCCACTGCCTGTAGTCCTTCATCGCATATAGAGTCAAGAGC
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- CATGTTGCAGCCACTGCCTGTAGTCCTTCATCGCATATAGAGTCAAGAGC
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1701   -   1751
UN14721        --> CCAGAAGACTCTGACATTGTGACAGTTGCGTATGATGGGCCTGAACACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- CCAGAAGACTCTGACATTGTGACAGTTGCGTATGATGGGCCTGAACACGT
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- CCAGAAGACTCTGACATTGTGACAGTTGCGTATGATGGGCCTGAACACGT
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1751   -   1801
UN14721        --> CAGGAGATATATTAGCATAACTGAAGTTAAGCGAGGTGAGATTCGCACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- CAGGAGATATc.......................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- CAGGAGATATATTAGCATAACTGAAGTTAAGCGAGGTGAGATTCGCACAA
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1801   -   1851
UN14721        --> ACTGGAGAGATAGCCGGAAGGTACTCCGCAGCCAACTCCCTGAACCCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- ACTGGAGAGATAGCCGGAAGGTACTCCGCAGCCAACTCCCTGAACCCCGA
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1851   -   1901
UN14721        --> GAGACAAACCAGTGATCCACAAGCACGGAACGCAGATGCATAATCCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- GAGACAAACCAGTGATCCACAAGCACGGAACGCAGATGCATAATCCGGTT
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1901   -   1951
UN14721        --> CTTGTTCGCCTTGAGCCGCATCATTGTGTGTACTACTACTACTGAACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- CTTGTTCGCCTTGAGCCGCATCATTGTGTGTACTACTACTACTGAACGAG
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               1951   -   2001
UN14721        --> CCCGTCCCGAGACTCGTTAACTGAGGCGCTCGAACCATTAGCCGATGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ..................................................
EV549414       <-- ..................................................
EY924620       <-- ..................................................
EY908319       <-- ..................................................
FD978426       <-- CCCGTCCCGAGACTCGTTAACTGAGGCGCTCGAACCATTAGCCGATGCAG
EV566850       --> ..................................................
EV569967       --> ..................................................
EY920237       --> ..................................................
FD555723       --> ..................................................
EY904034       --> ..................................................

               2001   -   2051
UN14721        --> CTCTTCGAGGGAAACAAACCTGTTGGTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD560113       <-- ...............................
EV549414       <-- ...............................
EY924620       <-- ...............................
EY908319       <-- ...............................
FD978426       <-- CTCTTCGAGGGAAACAAACCTGTTGGTTCTC
EV566850       --> ...............................
EV569967       --> ...............................
EY920237       --> ...............................
FD555723       --> ...............................
EY904034       --> ...............................