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Alignment for radish unigene UN15141

               1      -     51
UN15141        --> TGATACGAATGTTCCCTATATGGGCTTCAGGGATCATCTTCTCAGCTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TGATACGAATGTTCCCTATATGGGCTTCAGGGATCATCTTCTCAGCTGTA
FD575032       <-- .............CCCTATATGGGCTTCAGGGATCATCTTCTCAGCTGTA
EX766664       <-- ..................................................
FD529539       <-- ..................................................
EX900151       <-- ..................................................
EX752190       <-- ..................................................
EY926108       <-- ..................................................
FD936043       <-- ..................................................
FD533319       --> ....................................gCTTCTCAGCTGTA
EY922293       --> ..................................................

               51     -    101
UN15141        --> TACGCACAAATGTCCACGATGTTTGTTCAGCAAGGCAGAGCCATGGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TACGCACAAATGTCCACGATGTTTGTTCAGCAAGGCAGAGCCATGGACTG
FD575032       <-- TACGCACAAATGTCCACGATGTTTGTTCAGCAAGGCAGAGCCATGGACTG
EX766664       <-- ..........................TCAGCAAGGCAGAGCCATGGACTG
FD529539       <-- ..................................................
EX900151       <-- ..................................................
EX752190       <-- ..................................................
EY926108       <-- ..................................................
FD936043       <-- ..................................................
FD533319       --> TACGCACAAATGTTCACGACGTTTGTTCAGCAAGGCAGAGCCATGGACTG
EY922293       --> ..................................................

               101    -    151
UN15141        --> CAAAATCGGATCCTTCCAGCTTCCTCCAGCAGCGCTTGGAACGTTTGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- CAAAATCGGATCGTTCCAGCTTCCTCCAGCAGCGCTCGGAACGTTTGATA
FD575032       <-- CAAAATAGGATCCTTCCAGCTTCCTCCAGCAGCGCTTGGAACGTTTGATA
EX766664       <-- CAAAATCGGATCGTTCCAGCTTCCTCCAGCAGCGCTCGGGACGTTTGATA
FD529539       <-- .......GGATCCTTCCATCTTCCTCCAGCAGCGCTTGGAACGTTTGATA
EX900151       <-- ...................CTTCCTCCAGCAGCGCTTGGAACGTTTGATA
EX752190       <-- .........................CCAGCAGCGCTTGGAACGTTTGATA
EY926108       <-- ..................................................
FD936043       <-- ..................................................
FD533319       --> CAAAATAGGATCCTTCCATCTTCCTCCAGCAGCGCTTGGAACGTTTGATA
EY922293       --> ................................................gA

               151    -    201
UN15141        --> CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
FD575032       <-- CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
EX766664       <-- CAGCCAGCGTCATCATCTGGGTCCCACTCTACGACAGGTTCATCGTCCCT
FD529539       <-- CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
EX900151       <-- CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
EX752190       <-- CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
EY926108       <-- ..................................................
FD936043       <-- ..................................................
FD533319       --> CAGCTAGCGTCATCATCTGGGTTCCACTCTACGACAGGTTCATCGTCCCT
EY922293       --> CAGCCAGCGTCATCATCTGGGTCCCACTCTACGACAGGTTCATCGTCCCT

               201    -    251
UN15141        --> TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
FD575032       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
EX766664       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
FD529539       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
EX900151       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
EX752190       <-- TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCGCTGAGATACAGAG
EY926108       <-- ..GGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
FD936043       <-- ..................................................
FD533319       --> TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG
EY922293       --> TTGGCTAGACGGTTCACTGGAGTAGACAAAGGGTTCACTGAGATACAGAG

               251    -    301
UN15141        --> AATGGGGGTAGGTTTGTTCGTGTCTGTTCTTTGCATGGCAGCTGCAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- AATGGGTGTAGGTTTGTTCGTGTCTGTTCTCTGTATGGCAGCTGCAGCGA  Raphanus sativus var. oleiformis
FD575032       <-- AATGGGGGTAGGTTTGTTCGTGTCTGTTCTTTGCATGGCAGCTGCAGCCA  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- AATGGGGGTAGGTTTGTTCGTGTCTGTTCTCTGTATGGCAGCTGCAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- AATGGGGGTAGGTTTGTTCGTGTCTGTTCTTTGCATGGCAGCTGCAGCCA  Raphanus raphanistrum subsp. maritimus
EX900151       <-- AATGGGGGTAGGTTTGTTCGTGTCTGTTCTTTGCATGGCAGCTGCAGCCA  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- AATGGGGGTAGGTTTGTTCGTGTCTGCTCTTTGCATGGCAGCTGCAGCCA  Raphanus raphanistrum subsp. maritimus
EY926108       <-- AATGGGTGTAGGTTTGTTCGTGTCTGTTCTCTGTATGGCAGCTGCAGCGA  Raphanus sativus var. oleiformis
FD936043       <-- ..................................................  Raphanus sativus var. oleiformis
FD533319       --> AATGGGGGTAGGTTTGTTCGTGTCTGTTCTTTGCATGGCAGCTGCAGCCA  Raphanus raphanistrum subsp. maritimus
EY922293       --> AATGGGGGTAGGTTTGTTCGTGTCTGTTCTCTGTATGGCAGCTGCAGCCA  Raphanus raphanistrum subsp. landra

               301    -    351
UN15141        --> TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TTGTCGAGATCATCAGGCTCCATATGGCCAACGAGCGTGGACTGGTGGAG  Raphanus sativus var. oleiformis
FD575032       <-- TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- TCGTTGAGATCATCCGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus raphanistrum subsp. maritimus
EX900151       <-- TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus raphanistrum subsp. maritimus
EY926108       <-- TTGTCGAGATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus sativus var. oleiformis
FD936043       <-- .........TCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus sativus var. oleiformis
FD533319       --> TCGTTGAAATCATCAGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus raphanistrum subsp. maritimus
EY922293       --> TCGTTGAGATCATCCGGCTCCATATGGCCAACGAGCTTGGACTGGTGGAG  Raphanus raphanistrum subsp. landra

               351    -    401
UN15141        --> TCAGGTGCGCCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TCAGGTGCGCCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus sativus var. oleiformis
FD575032       <-- TCAGGTGCACCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- TCAGGTGCGCCGGTTCCTATATCCGTGTTATGGCAGATCCCACAGTACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- TCAGGTGCACCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus raphanistrum subsp. maritimus
EX900151       <-- TCAGGTGCACCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- TCAGGTGCACCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus raphanistrum subsp. maritimus
EY926108       <-- TCAGGTGCGCCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus sativus var. oleiformis
FD936043       <-- TCAGGTGCGCCAGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus sativus var. oleiformis
FD533319       --> TCAGGTGCACCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus raphanistrum subsp. maritimus
EY922293       --> TCAGGTGCGCCGGTTCCTATATCTGTGTTATGGCAGATCCCACAGTACTT  Raphanus raphanistrum subsp. landra

               401    -    451
UN15141        --> CATCCTCGGTGCTGCGGAAGTGTTCTATTTCATAGG-GCAGCTGGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- CATCCTCGGTGCTGCGGAAGTGTTCTACTTCATAGGTTCAGCTGGAGTTT  Raphanus sativus var. oleiformis
FD575032       <-- CATCCTCGGTGCTGCGGAAGTGTTTTATTTCATAGG-GCAGCTGGAGTTT  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- CATCCTCGGTGCTGCGGAAGTGTTCTACTTCATAGG-GCAGCTGGAGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- CATCCTCGGTGCTGCGGAAGTGTTCTATTTCATAGG-GCAGCTGGAGTTT  Raphanus raphanistrum subsp. maritimus
EX900151       <-- CATCCTCGGTGCTGCGGAAGTGTTCTATTTCATAGG-GCAGCTGGAGTTT  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- CATCCTCGGTGCTGCGGAAGTGTTCTATTTCATAGG-GCAGCTGGAGTTT  Raphanus raphanistrum subsp. maritimus
EY926108       <-- CATCCTCGGTGCTGCGGAAGTGTTCTACTTCATAGG-GCAGCTGGAGTTT  Raphanus sativus var. oleiformis
FD936043       <-- CATCCTCGGTGCTGCGGAAGTGTTCTACTTCATAGG-GCAGCTGGAGTTT  Raphanus sativus var. oleiformis
FD533319       --> CATCCTCGGTGCTGCGGAAGTGTTCTATTTCATAGG-GCAGCTGGAGTTT  Raphanus raphanistrum subsp. maritimus
EY922293       --> CATCCTCGGTGCTGCGGAAGTGTTCCACTTCATAGG-GCAGCTGGAGTTT  Raphanus raphanistrum subsp. landra

               451    -    501
UN15141        --> TTCTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCCTGTGCAGTGCTTTGGC
FD575032       <-- TTTTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC
EX766664       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC
FD529539       <-- TTCTATGACCAGTCTCCAGATGCAATGCAAAGCTTGTGCAGTGCTTTGGC
EX900151       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC
EX752190       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC
EY926108       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCCTGTGCAGTGCTTTGGC
FD936043       <-- TTCTATGACCAGTCTCCAGATGCAATGCGAAGCCTGTGCAGTGCTTTGGC
FD533319       --> TTCTATGACCAGTCTCCAGATGCAATGCAAAGCTTGTGCAGTGCTTTGGC
EY922293       --> TTCTATGACCAGTCTCCAGATGCAATGCGAAGCTTGTGCAGTGCTTTGGC

               501    -    551
UN15141        --> TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
FD575032       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
EX766664       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
FD529539       <-- TCTTTTGACCAATGCTGTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
EX900151       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
EX752190       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
EY926108       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
FD936043       <-- TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
FD533319       --> TCTTTTGACCAATGCTGTTGGGAACTACTTGAGCTCGTTGATCCTCACGC
EY922293       --> TCTTTTGACCAATGCTCTTGGGAACTACTTGAGCTCGTTGATCCTCACGC

               551    -    601
UN15141        --> TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT  Raphanus sativus var. oleiformis
FD575032       <-- TGGTGACTTATTTCACGACGAGGAACGATGAACAAGGTTGGATCTCGGAT  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- TGGTGACTTATTTCACGACGAGGAACGATGAACAAGGTTGGATCTCGGAT  Raphanus raphanistrum subsp. maritimus
EX900151       <-- TGGTGACTTATTTCACGACGAGGAACGATGAACAAGGTTGGATCTCGGAT  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- TGGTGACTTATTTCACGACGAGGAACGATGAACAAGGTTGGATCTCGGAT  Raphanus raphanistrum subsp. maritimus
EY926108       <-- TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT  Raphanus sativus var. oleiformis
FD936043       <-- TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT  Raphanus sativus var. oleiformis
FD533319       --> TGGTGACTTATTTCACGACGAGGAACGATGAACAAGGTTGGATCTCGGAT  Raphanus raphanistrum subsp. maritimus
EY922293       --> TGGTGACTTATTTCACGACGAGGAACGGTGAACAAGGTTGGATCTCGGAT  Raphanus raphanistrum subsp. landra

               601    -    651
UN15141        --> AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- AATCTGAACTCGGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus sativus var. oleiformis
FD575032       <-- AATTTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus raphanistrum subsp. maritimus
EX900151       <-- AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus raphanistrum subsp. maritimus
EY926108       <-- AATCTGAACTCGGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus sativus var. oleiformis
FD936043       <-- AATCTGAACTCGGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus sativus var. oleiformis
FD533319       --> AATCTGAACTCTGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus raphanistrum subsp. maritimus
EY922293       --> AATCTGAACTCGGGTCATCTTGATTACTACTTCTGGCTTTTGGCTGGGCT  Raphanus raphanistrum subsp. landra

               651    -    701
UN15141        --> TAGCCTCGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTCTCTGCCGCTAGGTATAAGC
FD575032       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
EX766664       <-- TAGCCACGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
FD529539       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTCTCTGCCGCTAGGTATAAGC
EX900151       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
EX752190       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
EY926108       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTCTCTGCCGCTAGGTATAAGC
FD936043       <-- TAGCCTCGTGAACATGGCGGTTTACTTTTTTTCTGCCGCTAGGTATAAGC
FD533319       --> TAGCCTCGTGAACATGGCGGTTTACTTTTTCTCTGCCGCTAGGTATAAGC
EY922293       --> TAGCCTCGTGAACATGGCGGTTTACTTTTTCTCTGCCGCTAGGTATAAGC

               701    -    751
UN15141        --> AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
FD575032       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
EX766664       <-- AGAAGAAGGCGCCCTAGTATTGATGGTGTTTTTGTTTTTATCTCTCCTTT
FD529539       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
EX900151       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
EX752190       <-- AGAAG.............................................
EY926108       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
FD936043       <-- AGAAGAAGGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT
FD533319       --> AG................................................
EY922293       --> AGAAGAATGCGCCCTAGTAATGATGGTGTTTTTGTTTTTATCTCTCCTTT

               751    -    801
UN15141        --> CATTACATTCAAGGTTTGGTTCTTTTCTT-GTGTAAATTGTGTCTGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- CATTACATTCAAGGTTTGGTTCTTTTCGT-GTGTAAATTGTGTCTGTTTA  Raphanus sativus var. oleiformis
FD575032       <-- CATTACATTCAAGGTTTGGCTCTTTTCTTTGTGTAAATTGTGTCTGTTTA  Raphanus sativus cv Early Scarlet Globe
EX766664       <-- CATTACATTCAAGGTTTGGTTCTTTTCTT-GTGTAAATTGTGTCTGTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529539       <-- CATTACATTCAAGGTTTGGCTCTTTTCTTTGTGTAAATTGTGTCTGTTTA  Raphanus raphanistrum subsp. maritimus
EX900151       <-- CATTACATTCAAGGTTTGGCTCTTTTCTTTGTGTAAATTGTGTCTGTTTA  Raphanus sativus cv Early Scarlet Globe
EX752190       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY926108       <-- CATTACATTCAAGGTTTGGTTCTTTTCGT-GTGTAAATTGTGTCTGTTTA  Raphanus sativus var. oleiformis
FD936043       <-- CATTACATTCAAGGTTTGGTTCTTTTCGT-GTGTAAATTGTGTCTGTTTA  Raphanus sativus var. oleiformis
FD533319       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY922293       --> CATTACATTCAAG-TTTGGTTCTTTTCTT-GTGTAAATTGTGTCTGTTT.  Raphanus raphanistrum subsp. landra

               801    -    851
UN15141        --> AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCACA
FD575032       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCAC.
EX766664       <-- AAGGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCAC.
FD529539       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCAC.
EX900151       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCAC.
EX752190       <-- ..................................................
EY926108       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCACA
FD936043       <-- AAAGAACAACTGTTGTGTACTTGTTTCTTTCAATTCCAAACAGTTTCAC.
FD533319       --> ..................................................
EY922293       --> ..................................................

               851    -    901
UN15141        --> TTTGCTTTAGCAGTGTAAATCAATTACTATCTTCTAAACAATAAGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW720053       <-- TTTGCTTTAGCAGTGTAAATCAATTACTATCTTCTAAgc...........
FD575032       <-- ..................................................
EX766664       <-- ..................................................
FD529539       <-- ..................................................
EX900151       <-- ..................................................
EX752190       <-- ..................................................
EY926108       <-- TTTGCTTTAGCAGTGTAAATCAATTACTATCTTCTAAACAATAAGTCAAT
FD936043       <-- ..................................................
FD533319       --> ..................................................
EY922293       --> ..................................................

               901    -    951
UN15141        --> AACTCTCC
                   ~~~~~~~~
EW720053       <-- ........
FD575032       <-- ........
EX766664       <-- ........
FD529539       <-- ........
EX900151       <-- ........
EX752190       <-- ........
EY926108       <-- AACTCTCC
FD936043       <-- ........
FD533319       --> ........
EY922293       --> ........